BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645011|ref|NP_207181.1| hypothetical protein
[Helicobacter pylori 26695]
         (174 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207181.1|  (NC_000915) hypothetical protein [Helicoba...   338  1e-92
ref|NP_223715.1|  (NC_000921) putative [Helicobacter pylori ...   324  3e-88
ref|NP_208156.1|  (NC_000915) signal-transducing protein, hi...    53  1e-06

>ref|NP_207181.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64567 hypothetical protein HP0383 - Helicobacter pylori (strain 26695)
 gb|AAD07463.1| (AE000555) H. pylori predicted coding region HP0383 [Helicobacter
           pylori 26695]
          Length = 174

 Score =  338 bits (868), Expect = 1e-92
 Identities = 174/174 (100%), Positives = 174/174 (100%)

Query: 1   MPHSFKKRFLIIYTLSTLLLVGVLLALFFFYAKNNLLENTQIRMQYTADAIAKSLLELNN 60
           MPHSFKKRFLIIYTLSTLLLVGVLLALFFFYAKNNLLENTQIRMQYTADAIAKSLLELNN
Sbjct: 1   MPHSFKKRFLIIYTLSTLLLVGVLLALFFFYAKNNLLENTQIRMQYTADAIAKSLLELNN 60

Query: 61  ASSLEPLKILEERFKNTPFVLLDADNKVKFSNIGAFVASFKNDALIKTPYFALKKQGFYL 120
           ASSLEPLKILEERFKNTPFVLLDADNKVKFSNIGAFVASFKNDALIKTPYFALKKQGFYL
Sbjct: 61  ASSLEPLKILEERFKNTPFVLLDADNKVKFSNIGAFVASFKNDALIKTPYFALKKQGFYL 120

Query: 121 TDSAPTNRLGVSKIIIAEEEIQKNFIPLYKMIGYAFLGASLFVALIARWLYKIQ 174
           TDSAPTNRLGVSKIIIAEEEIQKNFIPLYKMIGYAFLGASLFVALIARWLYKIQ
Sbjct: 121 TDSAPTNRLGVSKIIIAEEEIQKNFIPLYKMIGYAFLGASLFVALIARWLYKIQ 174



>ref|NP_223715.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71862 hypothetical protein jhp0998 - Helicobacter pylori (strain J99)
 gb|AAD06577.1| (AE001528) putative [Helicobacter pylori J99]
          Length = 174

 Score =  324 bits (830), Expect = 3e-88
 Identities = 166/173 (95%), Positives = 168/173 (96%)

Query: 1   MPHSFKKRFLIIYTLSTLLLVGVLLALFFFYAKNNLLENTQIRMQYTADAIAKSLLELNN 60
           MPHS KKRFLI+YTLSTLLLVGVLLALFFFYAKNNLLENTQIRMQYTADAIAKSLLELNN
Sbjct: 1   MPHSLKKRFLIVYTLSTLLLVGVLLALFFFYAKNNLLENTQIRMQYTADAIAKSLLELNN 60

Query: 61  ASSLEPLKILEERFKNTPFVLLDADNKVKFSNIGAFVASFKNDALIKTPYFALKKQGFYL 120
           ASSLEPLKILEERFKNTPFVLLDADN+VKFSNIG FVASFKNDALIKTPYFALKKQGFYL
Sbjct: 61  ASSLEPLKILEERFKNTPFVLLDADNRVKFSNIGVFVASFKNDALIKTPYFALKKQGFYL 120

Query: 121 TDSAPTNRLGVSKIIIAEEEIQKNFIPLYKMIGYAFLGASLFVALIARWLYKI 173
           TDSAPTNRLGVSKIIIAEEEIQK FIPLYKMIGY FLGASLFVALIA WLYKI
Sbjct: 121 TDSAPTNRLGVSKIIIAEEEIQKIFIPLYKMIGYVFLGASLFVALIAMWLYKI 173



>ref|NP_208156.1| (NC_000915) signal-transducing protein, histidine kinase
           [Helicobacter pylori 26695]
 pir||D64690 signal-transducing protein, histidine kinase - Helicobacter pylori
           (strain 26695)
 gb|AAD08404.1| (AE000636) signal-transducing protein, histidine kinase
           [Helicobacter pylori 26695]
          Length = 397

 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 7/170 (4%)

Query: 7   KRFLIIYTLSTLLLVGVLLALFFFYAKNNLLENTQIRMQYTADAIAKSLLELN---NASS 63
           K FL IY  S+ +L+ V+  L F Y KN  ++  ++ M   A  IA  ++ L+   +   
Sbjct: 14  KLFLGIYLGSSFVLMLVISVLAFNYEKNEKIKMIRMDMDKMASKIASEVIALHMQTHGDY 73

Query: 64  LEPLKILEERFKNTPFVLLDADNKVKFSNIGAFVASFKNDALIKTPYFALKKQGFYLTDS 123
              L  L  R+K+    L D+  +V +SNI       KN    +  +F+ + + +YL   
Sbjct: 74  QNALNALISRYKDASIALFDSKKRVLYSNIPESANLIKNHK--EAGFFSFRGE-YYLLSD 130

Query: 124 APTNRLGVSKIIIAEEEIQKNFIPLYKMIGYAFLGASLFVALIARWLYKI 173
                LGV+K++    +   +F  LY+ I   F+ A L V  ++ +L ++
Sbjct: 131 ETFAHLGVAKMLFKNSK-PLHFSSLYRNIVLVFVVAFLCVIGVSVFLGRL 179



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.325    0.141    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,206,796
Number of Sequences: 1026957
Number of extensions: 3770436
Number of successful extensions: 13073
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13071
Number of HSP's gapped (non-prelim): 3
length of query: 174
length of database: 324,149,939
effective HSP length: 113
effective length of query: 61
effective length of database: 208,103,798
effective search space: 12694331678
effective search space used: 12694331678
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 93 (40.4 bits)