BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644671|ref|NP_206840.1| hypothetical protein
[Helicobacter pylori 26695]
(245 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206840.1| (NC_000915) hypothetical protein [Helicoba... 478 e-134
emb|CAA10655.1| (AJ132366) ComB1 protein [Helicobacter pylori] 467 e-131
ref|NP_222756.1| (NC_000921) DNA transformation competancy ... 459 e-129
gb|AAM03034.1|AF487344_8 (AF487344) putative VirB8 [Helicob... 186 3e-46
ref|NP_223639.1| (NC_000921) putative [Helicobacter pylori ... 151 7e-36
ref|NP_207237.1| (NC_000915) hypothetical protein [Helicoba... 142 4e-33
gb|AAF97745.1|AF226280_1 (AF226280) ComB1 [Campylobacter je... 135 4e-31
ref|NP_067576.1| (NC_002579) unknown [Actinobacillus actino... 53 3e-06
dbj|BAA97432.1| (AB045234) component of type IV secretion s... 53 3e-06
emb|CAB60058.1| (Y19029) lvhB8 [Legionella pneumophila] 50 3e-05
gb|AAK19531.1| (AF332996) transport associated protein 8 [A... 49 5e-05
dbj|BAA97439.1| (AB045235) component of type IV secretion s... 49 5e-05
ref|NP_360024.1| (NC_003103) unknown [Rickettsia conorii] >... 47 2e-04
gb|AAM08245.1| (AF410854) probable conjugal transfer protei... 45 5e-04
ref|NP_541009.1| (NC_003318) CHANNEL PROTEIN VIRB8 HOMOLOG ... 44 0.001
gb|AAF00946.1|AF182718_7 (AF182718) VirB8 homolog [Bartonel... 44 0.002
gb|AAM43802.1| (AY099093) VirB8 [Bartonella quintana] 43 0.003
gb|AAM43803.1| (AY099094) VirB8 long form [Bartonella quint... 43 0.003
ref|NP_220673.1| (NC_000963) unknown [Rickettsia prowazekii... 42 0.008
>ref|NP_206840.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64524 hypothetical protein HP0038 - Helicobacter pylori (strain 26695)
gb|AAD07118.1| (AE000526) H. pylori predicted coding region HP0038 [Helicobacter
pylori 26695]
Length = 245
Score = 478 bits (1231), Expect = e-134
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MKEKPFNSEQLIYLEELLNHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLM 60
MKEKPFNSEQLIYLEELLNHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLM
Sbjct: 1 MKEKPFNSEQLIYLEELLNHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLM 60
Query: 61 SFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL 120
SFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL
Sbjct: 61 SFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL 120
Query: 121 NRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQSHLEREVHIVNIAIYQQD 180
NRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQSHLEREVHIVNIAIYQQD
Sbjct: 121 NRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQSHLEREVHIVNIAIYQQD 180
Query: 181 NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI 240
NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
Sbjct: 181 NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI 240
Query: 241 TNRGD 245
TNRGD
Sbjct: 241 TNRGD 245
>emb|CAA10655.1| (AJ132366) ComB1 protein [Helicobacter pylori]
Length = 247
Score = 467 bits (1201), Expect = e-131
Identities = 240/247 (97%), Positives = 245/247 (99%), Gaps = 2/247 (0%)
Query: 1 MKEKPFNSEQLIYLEELLNHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLM 60
M+EKPFNSEQLIYLEELL+HQEKHLENKLSGFSV+DLDMQSVFRLERNRLKIAYKLLGLM
Sbjct: 1 MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLM 60
Query: 61 SFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL 120
SFIAL+LAIVLIS+LPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL
Sbjct: 61 SFIALILAIVLISLLPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL 120
Query: 121 NRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQSHLEREVHIVNIAIYQQD 180
NRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQSHLEREVHIVNIAIYQQD
Sbjct: 121 NRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQSHLEREVHIVNIAIYQQD 180
Query: 181 NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI 240
NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
Sbjct: 181 NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI 240
Query: 241 --TNRGD 245
TNRGD
Sbjct: 241 APTNRGD 247
>ref|NP_222756.1| (NC_000921) DNA transformation competancy [Helicobacter pylori J99]
pir||H71980 DNA transformation competancy - Helicobacter pylori (strain J99)
gb|AAD05621.1| (AE001443) DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 459 bits (1182), Expect = e-129
Identities = 236/247 (95%), Positives = 242/247 (97%), Gaps = 2/247 (0%)
Query: 1 MKEKPFNSEQLIYLEELLNHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLM 60
MKEKPFNSEQ+ +LEELL+HQEKHLE+KLSGFSVNDLDMQSVFRLERNRLKIAY+LLGLM
Sbjct: 1 MKEKPFNSEQMAFLEELLSHQEKHLESKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLM 60
Query: 61 SFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL 120
SFIALVLAIVLIS+LPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL
Sbjct: 61 SFIALVLAIVLISILPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL 120
Query: 121 NRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQSHLEREVHIVNIAIYQQD 180
NRESINRIDDKSRYELVRLQSSSKVWQRFEDLIK QNSIYVQSHLEREVHIVNIAIYQQD
Sbjct: 121 NRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIYVQSHLEREVHIVNIAIYQQD 180
Query: 181 NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI 240
NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
Sbjct: 181 NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI 240
Query: 241 --TNRGD 245
TNR D
Sbjct: 241 APTNRND 247
>gb|AAM03034.1|AF487344_8 (AF487344) putative VirB8 [Helicobacter pylori]
Length = 352
Score = 186 bits (471), Expect = 3e-46
Identities = 97/223 (43%), Positives = 149/223 (66%), Gaps = 7/223 (3%)
Query: 25 LENKLSGFSVNDLDMQSVFRLERNRLKIAYKLL--GLMSFIALVLAIVLISVLPLQKTEH 82
+ +L F ++LD+ SVF ++R +IAY+L GL+ IAL +AI ++ +PL++
Sbjct: 116 INTQLESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIIALSIAIFIM--MPLKENTP 173
Query: 83 HFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRY-ELVRLQS 141
+F+DF N DKH+A++QRAD + +EA R+L+G+Y+ RE+IN IDDK R E +R QS
Sbjct: 174 YFIDFANSDKHFAVVQRADTKVDYSEAFLRNLVGSYITARETINHIDDKIRLNETIREQS 233
Query: 142 SSKVWQRFEDLIKTQNSIYVQSHLEREVHIVNIAIYQQDNNP-IASVSIAAKLLNENKLV 200
S +VW+ E L+ + SIY S+++RE+ I+NI+IY+Q IA I AK+ ++ L+
Sbjct: 234 SEEVWKTLEQLVSGKGSIYSNSNMDREIKIINISIYKQGKQQNIAVADIVAKVFDKGYLI 293
Query: 201 YEKRYKIVLSYLF-DTPDFDYASMPKNPTGFKITRYSITEITN 242
EKR ++ L Y F FDY+SMPKNPTGF + +YS++EI +
Sbjct: 294 CEKRDRVSLIYHFKPLIQFDYSSMPKNPTGFIVDKYSLSEIAS 336
>ref|NP_223639.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71871 hypothetical protein jhp0921 - Helicobacter pylori (strain J99)
gb|AAD06498.1| (AE001521) putative [Helicobacter pylori J99]
Length = 328
Score = 151 bits (381), Expect = 7e-36
Identities = 75/180 (41%), Positives = 126/180 (69%), Gaps = 5/180 (2%)
Query: 63 IALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNR 122
+AL+ AI+++ +LPL++ + V F N +++AI+QRADKSI +N+AL R L+ +YV NR
Sbjct: 112 LALIEAIIIVCLLPLKEKVPYLVTFSNATQNFAIVQRADKSIRANQALVRQLVASYVNNR 171
Query: 123 ESINRIDDKSR--YELVRLQSSSKVWQRFEDLIKTQNSIYVQSHLEREVHIVNIAIYQQD 180
E+I+ I +++ +E +RLQS+ +VW FE L+ ++SIY +L R++ I+NIA+ +
Sbjct: 172 ENISSIKEQNEIAHETIRLQSAFEVWDFFEKLVSYEHSIYTNINLTRKISIINIALISKT 231
Query: 181 NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI 240
A++ I+A+L ++ KL EKRY+I++++ F+ + D S+P NPTGF +T Y +TEI
Sbjct: 232 Q---ANIEISAQLFHKEKLESEKRYRIIMTFEFEPIEIDTKSVPLNPTGFIVTGYDVTEI 288
>ref|NP_207237.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64574 hypothetical protein HP0439 - Helicobacter pylori (strain 26695)
gb|AAD07508.1| (AE000559) H. pylori predicted coding region HP0439 [Helicobacter
pylori 26695]
Length = 366
Score = 142 bits (357), Expect = 4e-33
Identities = 79/205 (38%), Positives = 122/205 (58%), Gaps = 6/205 (2%)
Query: 38 DMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAII 97
D ++ LE+ + + +L I+L +LPL++ E + V F N +++A++
Sbjct: 149 DASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENFALV 208
Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRID--DKSRYELVRLQSSSKVWQRFEDLIKT 155
Q+AD SI++N+AL RSL+GAYVLNRESI I+ +K R ++ QSS++VW FE LI
Sbjct: 209 QKADSSITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKLIAH 268
Query: 156 QNSIYVQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDT 215
+SIY L R+V I NI + + +A + I L + +L KRYK+V+S+ F
Sbjct: 269 YDSIYTNPLLTRKVKIANIYL----DKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKK 324
Query: 216 PDFDYASMPKNPTGFKITRYSITEI 240
+ ++ SM NPTGF +T Y +TEI
Sbjct: 325 QEINFDSMSLNPTGFMVTSYDVTEI 349
>gb|AAF97745.1|AF226280_1 (AF226280) ComB1 [Campylobacter jejuni]
Length = 225
Score = 135 bits (340), Expect = 4e-31
Identities = 72/207 (34%), Positives = 122/207 (58%), Gaps = 10/207 (4%)
Query: 38 DMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAII 97
D +F+LERN ++ ++ I + LAI + + P ++ + + V F + + ++ +
Sbjct: 9 DPNFIFQLERNIKAYMLYIIIALTTIVVSLAIAITFLAPFKEVKPYLVFFSDGETNFVKV 68
Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157
++A + ++E L +S++ YV RE+INR+DD RYE +RLQS VW+ F +L+K N
Sbjct: 69 EQAGMDMRADENLLKSILAGYVKKRETINRVDDSERYEEIRLQSQKNVWETFSNLVKAPN 128
Query: 158 SIYVQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLN----ENKLVYEKRYKIVLSYLF 213
SIY + R + I+N++I+ N +A++ AK+ N EN L K+Y+ L + F
Sbjct: 129 SIYTTQGVFRSIEIINVSIF---NKNVATIDFIAKITNRDGSENHL---KKYRATLFFDF 182
Query: 214 DTPDFDYASMPKNPTGFKITRYSITEI 240
+ Y S+PKNPTGF + +YSIT+I
Sbjct: 183 IPMELTYNSVPKNPTGFIVKQYSITDI 209
>ref|NP_067576.1| (NC_002579) unknown [Actinobacillus actinomycetemcomitans]
gb|AAG24429.1|AF302424_29 (AF302424) unknown [Actinobacillus actinomycetemcomitans]
Length = 228
Score = 53.1 bits (126), Expect = 3e-06
Identities = 51/216 (23%), Positives = 108/216 (49%), Gaps = 19/216 (8%)
Query: 36 DLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYA 95
DL+ ++ +E++ + A+K+ + I+LVL V +S+LPL++ V FL +D
Sbjct: 14 DLEAKNQENIEKSEAR-AWKVARVSWLISLVLGAVTVSILPLREV----VPFLIRDNGTG 68
Query: 96 I---IQRAD-KSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFED 151
I I R D +++++++A+ + I Y+ NRE + YEL ++ SS +V + +
Sbjct: 69 IPDVITRLDVETLTTDDAMDKHFISQYITNREGYYFNTXQQEYELTQMMSSDEVAKDYRS 128
Query: 152 LIKTQNS----IYVQSHLEREVHIVNIAIYQQDNNPIAS--VSIAAKLLNENKLVYEKRY 205
+ + +N+ + + ++ E++ + ++ + + AS + +L+ N E+
Sbjct: 129 IYEGKNARDQKLGSSNTVKPEINSIVLSKKEVGTDGQASNIATARVRLIQRNLSTGEETA 188
Query: 206 K-IVLSYLFD---TPDFDYASMPKNPTGFKITRYSI 237
K IV+S ++ + NP GF +T Y +
Sbjct: 189 KNIVVSLTYEYLPVKNMVEGFRMDNPLGFIVTHYRV 224
>dbj|BAA97432.1| (AB045234) component of type IV secretion system [Wolbachia sp.
wTai]
Length = 226
Score = 52.8 bits (125), Expect = 3e-06
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 13/192 (6%)
Query: 56 LLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRAD----KSISSNEALA 111
L L+ +A+ ++I+ I + T FV + DK I+Q D K S+NE L
Sbjct: 37 LFTLILLVAISISILAIFKISTSSTIEPFV--IEIDKKSGIVQLVDPVTVKQYSANETLN 94
Query: 112 RSLIGAYVLNRESINRID-DKSRYELVRLQSSSKVWQRFEDLIKTQNS---IYVQSHLER 167
I Y+ RE + + + + Y VRL SS V+ F + IK+QN + S +
Sbjct: 95 DYFISEYIKAREVFDPYNYNYNYYTKVRLFSSPSVYSEFSNYIKSQNMNDLFNLYSDAKG 154
Query: 168 EVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNP 227
E+ I +I Q+ N V + + ++ K +V+SY + + + + NP
Sbjct: 155 ELKIRSI---QKLGNDALQVRFSIEFTRKDGNSSRKNKIVVMSYKYASLEMNDQQRYINP 211
Query: 228 TGFKITRYSITE 239
GF++ Y + +
Sbjct: 212 LGFQVISYRVDD 223
>emb|CAB60058.1| (Y19029) lvhB8 [Legionella pneumophila]
Length = 238
Score = 49.7 bits (117), Expect = 3e-05
Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 31/211 (14%)
Query: 47 RNRLKIAYKLLGLMSFIALVLAIVLI---SVLPLQKTEHHFVDFLNQDKHYAIIQRADKS 103
RNR + A+ ++ +AL++ +L +V+P+ HH+ D ++ +
Sbjct: 28 RNRYQAAFFSAMGLNVVALIVIGMLAHYQTVVPM--LVHHY------DNGVTTVEPMENK 79
Query: 104 ISS-NEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRF---EDLIKTQNSI 159
++ N A S I Y+ RES + ++++ELV L S+S V + + +D T + I
Sbjct: 80 LTPINRAQIESDIARYIQYRESYDASSYRAQFELVHLLSNSTVAKEYLQEQDAANTASPI 139
Query: 160 Y-VQSHLEREVHIVNIAI----------YQQDNNPIASVSIAAKLLNENKL---VYEKRY 205
+ + +H++REV I +I +D++ +A V + L++ +K Y
Sbjct: 140 HALGNHIKREVRIYSINFLDSVLANEKDLHKDHHALAEVVFS--LIDTDKTSGKTTSTHY 197
Query: 206 KIVLSYLFDTPDFDYASMPKNPTGFKITRYS 236
++S+ + P + KN GF++TRYS
Sbjct: 198 NAMISWRYTNPPDSPETRWKNWDGFEVTRYS 228
>gb|AAK19531.1| (AF332996) transport associated protein 8 [Actinobacillus
actinomycetemcomitans]
Length = 228
Score = 48.9 bits (115), Expect = 5e-05
Identities = 50/216 (23%), Positives = 108/216 (49%), Gaps = 19/216 (8%)
Query: 36 DLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYA 95
DL+ ++ +E++ + A+K+ + I+ VL V++S+LPL++ V FL +D
Sbjct: 14 DLEAKNQENIEKSEAR-AWKVARVSWLISFVLGAVIVSILPLREV----VPFLIRDNGTG 68
Query: 96 I---IQRAD-KSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFED 151
I I R D +++++++A+ + I Y+ RE + YEL ++ SS +V + +
Sbjct: 69 IPDVITRLDVETLTTDDAMDKHFISQYIKTREGYYFNTLQQEYELTQMMSSDEVAKDYRS 128
Query: 152 LIKTQNSIYVQSHLEREV--HIVNIAIYQQD---NNPIASVSIA-AKLLNENKLVYEKRY 205
+ + +N+ + V I++I + +++ + ++++ A +L+ N E+
Sbjct: 129 IYEGKNARDQKLGSSNTVKPEIISIVLSKKEVGTDGQASNIATARVRLIQRNLSTGEETA 188
Query: 206 K-IVLSYLFD---TPDFDYASMPKNPTGFKITRYSI 237
K IV+S ++ + NP GF +T Y +
Sbjct: 189 KNIVVSLTYEYLPVKNMVEGFRMDNPLGFIVTHYRV 224
>dbj|BAA97439.1| (AB045235) component of type IV secretion system [Wolbachia sp.
wKueYO]
Length = 226
Score = 48.9 bits (115), Expect = 5e-05
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 59 LMSFIALVLAIVLISVLPLQK-----TEHHFVDFLNQDKHYAIIQRAD----KSISSNEA 109
L+ F ++LA + IS+L + K T FV + DK I+Q D K S++EA
Sbjct: 35 LLLFALILLATISISILVIFKISTSSTIEPFV--IEIDKKSGIVQLVDPVTVKQYSADEA 92
Query: 110 LARSLIGAYVLNRESINRID-DKSRYELVRLQSSSKVWQRFEDLIKTQN-----SIYVQS 163
L I Y+ RE + + + Y VRL SS V+ F + + +QN ++Y +
Sbjct: 93 LNDYFISEYIKAREVFDPYHYNYNYYTKVRLFSSPNVYNEFRNYVGSQNMDDLFNLYSDT 152
Query: 164 HLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASM 223
E ++ + Q+ N V + ++ K +++SY + + D
Sbjct: 153 KSEFKIRSI-----QKLGNDALQVRFFVEFTRKDGSSTRKNKIVIMSYRYASLKMDDQQR 207
Query: 224 PKNPTGFKITRYSITE 239
NP GF++ Y + +
Sbjct: 208 YINPLGFQVISYRVDD 223
>ref|NP_360024.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL02925.1| (AE008603) unknown [Rickettsia conorii]
Length = 243
Score = 46.6 bits (109), Expect = 2e-04
Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 9/198 (4%)
Query: 45 LERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRADKS- 103
++RN L I LL + +V+A ++I+ + K FV LN + A + S
Sbjct: 49 VQRNLLIILIILLTIF----MVIATLVIAFVVKSKQFEPFVIQLNSNTGRASVVEPISSP 104
Query: 104 -ISSNEALARSLIGAYVLNRESINRIDDKS-RYELVRLQSSSKVWQRFEDLIKTQNSIYV 161
++++E+L R I Y+ RE+ N +D + +RL S+S V+ + I+ ++
Sbjct: 105 VLTADESLTRYFIKKYITARETYNPVDFATIARTTIRLFSTSSVYYNYLGYIRNKDFDPT 164
Query: 162 QSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYA 221
+ E + + + + V + + N+LVY K V+SY + +
Sbjct: 165 LKYKEENTTFLVVKSWSKIAADKYIVRFSVNETSGNQLVYNKI--AVVSYAYVPMQLTDS 222
Query: 222 SMPKNPTGFKITRYSITE 239
+ NP GF++ Y + +
Sbjct: 223 ELDVNPVGFQVNGYRVDD 240
>gb|AAM08245.1| (AF410854) probable conjugal transfer protein [Legionella
pneumophila]
Length = 238
Score = 45.4 bits (106), Expect = 5e-04
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 33/212 (15%)
Query: 47 RNRLKIAY-KLLGLMSFIALVLAIVLISVLPLQKT-----EHHFVDFLNQDKHYAIIQRA 100
RNR + A+ +GL V+A+++I +L +T HH+ D ++
Sbjct: 28 RNRYQAAFFSAMGLN-----VVALIVIGMLAHYQTIVPMLVHHY------DNGVTTVEPI 76
Query: 101 D-KSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRF---EDLIKTQ 156
+ K N A S I Y+ RES + ++++ELV L S+S V + + +D
Sbjct: 77 ENKETPINRAQIESDIARYIQYRESYDASSYRAQFELVHLLSNSTVAKEYLQEQDAANAA 136
Query: 157 NSIY-VQSHLEREVHIVNIAI----------YQQDNNPIASVSIAAKLLNENK-LVYEKR 204
+ I+ + +H++REV I +I +D++ +A V + +++
Sbjct: 137 SPIHALGNHIKREVRIYSINFLDSVLANEKDLHKDHHALAEVVFSLIDIDKTSGKTTSTH 196
Query: 205 YKIVLSYLFDTPDFDYASMPKNPTGFKITRYS 236
Y ++S+ + P + KN GF++TRY+
Sbjct: 197 YNAMISWRYTNPPDSPETRWKNWDGFEVTRYT 228
>ref|NP_541009.1| (NC_003318) CHANNEL PROTEIN VIRB8 HOMOLOG [Brucella melitensis]
gb|AAD56618.1|AF141604_8 (AF141604) VirB8 [Brucella melitensis biovar Suis]
gb|AAF73901.1|AF226278_8 (AF226278) VirB8 [Brucella melitensis biovar Abortus]
gb|AAL53273.1| (AE009642) CHANNEL PROTEIN VIRB8 HOMOLOG [Brucella melitensis]
Length = 239
Score = 44.3 bits (103), Expect = 0.001
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 9/200 (4%)
Query: 44 RLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRAD-K 102
RL + A+K+ G I ++L I + +LPL++ + V Q I+ D K
Sbjct: 35 RLVEKSERRAWKIAGAFGTITVLLGIGIAGMLPLKQHVPYLVRVNAQTGAPDILTSLDEK 94
Query: 103 SISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQ 162
S+S + + + + YV+ RE+ + + YE V + SS Q + + ++ Q
Sbjct: 95 SVSYDTVMDKYWLSQYVIARETYDWYTLQKDYETVGMLSSPSEGQSYASQFQGDKALDKQ 154
Query: 163 --SHLEREVHIVNIAIYQQDNNPIASVSIA--AKLLNENKLVYEKRYKIVLSYLFDTPD- 217
S++ V IV+I + I +V A K NE + + Y + P
Sbjct: 155 YGSNVRTSVTIVSIV---PNGKGIGTVRFAKTTKRTNETGDGETTHWIATIGYQYVNPSL 211
Query: 218 FDYASMPKNPTGFKITRYSI 237
++ NP GF +T Y +
Sbjct: 212 MSESARLTNPLGFNVTSYRV 231
>gb|AAF00946.1|AF182718_7 (AF182718) VirB8 homolog [Bartonella henselae]
Length = 202
Score = 43.5 bits (101), Expect = 0.002
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 47 RNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRADKSISS 106
R R++IA L L + + LA+ + ++ PL KT FV + D II+ +
Sbjct: 5 RQRMRIAMALTVLFGLMTIALALAVAALTPL-KTVEPFV--IRVDNSTGIIETVSALKET 61
Query: 107 ----NEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQ 162
+EA+ R YV RE + + + LV L SS + RF N Q
Sbjct: 62 PNDYDEAITRYFASKYVRAREGFQLSEAEHNFRLVSLLSSPEEQSRFAKWYAGNNPESPQ 121
Query: 163 SHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIV--------LSYLFD 214
+ IYQ N IA+V+I + L+ + YK V +S+
Sbjct: 122 N------------IYQ---NMIATVTIKSISFLSKDLIQVRYYKTVRELNDKENISHWVS 166
Query: 215 TPDFDYASMP-------KNPTGFKITRY 235
+F Y + NP GF+++ Y
Sbjct: 167 ILNFSYINAQISTQDRLINPLGFQVSEY 194
>gb|AAM43802.1| (AY099093) VirB8 [Bartonella quintana]
Length = 202
Score = 43.1 bits (100), Expect = 0.003
Identities = 45/196 (22%), Positives = 82/196 (40%), Gaps = 13/196 (6%)
Query: 47 RNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRAD--KSI 104
+ R++IA L L + + LA+ + ++ PL KT FV + D II+ K
Sbjct: 5 QQRMRIAMTLTVLFGLMTIALALAVAALTPL-KTVEPFV--IRVDNSTGIIETVSALKET 61
Query: 105 SSN--EALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQ 162
+N EA+ R G YV RE + + + L+ L SS + RF N Q
Sbjct: 62 PNNYDEAITRYFAGKYVRAREGFQLSEAEYNFRLISLLSSPEEQNRFAKWYSGNNPESPQ 121
Query: 163 S---HLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFD 219
+ ++ +V I +I+ +D + +L + + + +L++ +
Sbjct: 122 NIYHNMTAKVTIKSISFLSKDLIQVRYYKTIRELNGKENI---SHWVSILNFSYINAHIS 178
Query: 220 YASMPKNPTGFKITRY 235
NP GF+++ Y
Sbjct: 179 TEDRLINPLGFQVSEY 194
>gb|AAM43803.1| (AY099094) VirB8 long form [Bartonella quintana]
Length = 234
Score = 43.1 bits (100), Expect = 0.003
Identities = 45/196 (22%), Positives = 82/196 (40%), Gaps = 13/196 (6%)
Query: 47 RNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRAD--KSI 104
+ R++IA L L + + LA+ + ++ PL KT FV + D II+ K
Sbjct: 37 QQRMRIAMTLTVLFGLMTIALALAVAALTPL-KTVEPFV--IRVDNSTGIIETVSALKET 93
Query: 105 SSN--EALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQ 162
+N EA+ R G YV RE + + + L+ L SS + RF N Q
Sbjct: 94 PNNYDEAITRYFAGKYVRAREGFQLSEAEYNFRLISLLSSPEEQNRFAKWYSGNNPESPQ 153
Query: 163 S---HLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFD 219
+ ++ +V I +I+ +D + +L + + + +L++ +
Sbjct: 154 NIYHNMTAKVTIKSISFLSKDLIQVRYYKTIRELNGKENI---SHWVSILNFSYINAHIS 210
Query: 220 YASMPKNPTGFKITRY 235
NP GF+++ Y
Sbjct: 211 TEDRLINPLGFQVSEY 226
>ref|NP_220673.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZDN8|Y289_RICPR Hypothetical protein RP289
pir||D71684 hypothetical protein RP289 - Rickettsia prowazekii
emb|CAA14750.1| (AJ235271) unknown [Rickettsia prowazekii]
Length = 243
Score = 41.6 bits (96), Expect = 0.008
Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 9/198 (4%)
Query: 45 LERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAIIQRADKS- 103
++RN L I LL + +V++ ++I+ + K FV LN + A + S
Sbjct: 49 VQRNLLIILIILLTIF----MVISTLVIAFVVKSKQFDPFVIQLNSNTGRAAVVEPISSS 104
Query: 104 -ISSNEALARSLIGAYVLNRESINRIDDKS-RYELVRLQSSSKVWQRFEDLIKTQNSIYV 161
++ +E+L R I Y+ RE+ N +D + VRL S+S V+ + I+ ++
Sbjct: 105 MLTVDESLTRYFIKKYITARETYNPVDFATIARTTVRLFSTSAVYYNYLGYIRNKDFDPT 164
Query: 162 QSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYA 221
+ E + I + + + V + + ++LVY K V+SY + +
Sbjct: 165 LKYKEDNTTFLVIKSWSKIADDKYIVRFSVNETSGSQLVYNKI--AVVSYDYVPMQLTDS 222
Query: 222 SMPKNPTGFKITRYSITE 239
+ NP GF++ Y + +
Sbjct: 223 ELDINPVGFQVNGYRVDD 240
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.135 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,414,766
Number of Sequences: 1026957
Number of extensions: 5101916
Number of successful extensions: 15746
Number of sequences better than 1.0e-02: 19
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 15725
Number of HSP's gapped (non-prelim): 19
length of query: 245
length of database: 324,149,939
effective HSP length: 118
effective length of query: 127
effective length of database: 202,969,013
effective search space: 25777064651
effective search space used: 25777064651
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)