BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645012|ref|NP_207182.1| hypothetical protein
[Helicobacter pylori 26695]
         (250 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207182.1|  (NC_000915) hypothetical protein [Helicoba...   497  e-140
ref|NP_223714.1|  (NC_000921) putative [Helicobacter pylori ...   426  e-118
ref|NP_222894.1|  (NC_000921) putative [Helicobacter pylori ...    77  1e-13
ref|NP_206984.1|  (NC_000915) hypothetical protein [Helicoba...    72  4e-12
ref|NP_248322.1|  (NC_000909) purine NTPase [Methanococcus j...    45  7e-04

>ref|NP_207182.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64567 hypothetical protein HP0384 - Helicobacter pylori (strain 26695)
 gb|AAD07464.1| (AE000555) H. pylori predicted coding region HP0384 [Helicobacter
           pylori 26695]
          Length = 250

 Score =  497 bits (1279), Expect = e-140
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MQKNILKMTLLLVFLFLRNAVGLEDKKATTQPESVQNTPKDLPPIQLRLNQVHEELIEML 60
           MQKNILKMTLLLVFLFLRNAVGLEDKKATTQPESVQNTPKDLPPIQLRLNQVHEELIEML
Sbjct: 1   MQKNILKMTLLLVFLFLRNAVGLEDKKATTQPESVQNTPKDLPPIQLRLNQVHEELIEML 60

Query: 61  ENMGKGTQYEFPKIKEILEQSEEEWLKVAHEECVALVMLISPKASIENSPIYKNCYEAYV 120
           ENMGKGTQYEFPKIKEILEQSEEEWLKVAHEECVALVMLISPKASIENSPIYKNCYEAYV
Sbjct: 61  ENMGKGTQYEFPKIKEILEQSEEEWLKVAHEECVALVMLISPKASIENSPIYKNCYEAYV 120

Query: 121 KQRIHDLYDFYIESKKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASI 180
           KQRIHDLYDFYIESKKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASI
Sbjct: 121 KQRIHDLYDFYIESKKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASI 180

Query: 181 PKGYYLQIGAXLNAPSKDFLQTLKTFPYQIKKKDSLTHYFIGPYKTKEEALKQLENAIKS 240
           PKGYYLQIGA LNAPSKDFLQTLKTFPYQIKKKDSLTHYFIGPYKTKEEALKQLENAIKS
Sbjct: 181 PKGYYLQIGAXLNAPSKDFLQTLKTFPYQIKKKDSLTHYFIGPYKTKEEALKQLENAIKS 240

Query: 241 FKNKPVLVEK 250
           FKNKPVLVEK
Sbjct: 241 FKNKPVLVEK 250



>ref|NP_223714.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71862 hypothetical protein jhp0997 - Helicobacter pylori (strain J99)
 gb|AAD06578.1| (AE001528) putative [Helicobacter pylori J99]
          Length = 248

 Score =  426 bits (1094), Expect = e-118
 Identities = 211/250 (84%), Positives = 231/250 (92%), Gaps = 2/250 (0%)

Query: 1   MQKNILKMTLLLVFLFLRNAVGLEDKKATTQPESVQNTPKDLPPIQLRLNQVHEELIEML 60
           MQK+I K+TLLLVFLFLRNAVGL+DKKA   P+SVQNTPK+LPPIQLRL+Q +E+LI+ML
Sbjct: 1   MQKSIFKITLLLVFLFLRNAVGLDDKKAA--PKSVQNTPKNLPPIQLRLDQAYEDLIKML 58

Query: 61  ENMGKGTQYEFPKIKEILEQSEEEWLKVAHEECVALVMLISPKASIENSPIYKNCYEAYV 120
           +NMGK TQYEFPKIKEILEQSEEEWL VAHEECVALVMLISPKASIENSPIYKNCYEAYV
Sbjct: 59  DNMGKSTQYEFPKIKEILEQSEEEWLGVAHEECVALVMLISPKASIENSPIYKNCYEAYV 118

Query: 121 KQRIHDLYDFYIESKKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASI 180
           KQRIHDLYDFYIE KKVKRKIKKAH+ E A+N+SQPL KE PK+ENKK L KP+LKDA I
Sbjct: 119 KQRIHDLYDFYIEGKKVKRKIKKAHEHEMALNKSQPLKKEPPKSENKKGLTKPSLKDAKI 178

Query: 181 PKGYYLQIGAXLNAPSKDFLQTLKTFPYQIKKKDSLTHYFIGPYKTKEEALKQLENAIKS 240
           PKGYYLQIGA LN+PSKDFLQTLKTFP+Q+++KDSLTHY IGPYKTKEEALKQLENA KS
Sbjct: 179 PKGYYLQIGAFLNSPSKDFLQTLKTFPHQMEEKDSLTHYLIGPYKTKEEALKQLENAAKS 238

Query: 241 FKNKPVLVEK 250
           FKNKP LVEK
Sbjct: 239 FKNKPALVEK 248



>ref|NP_222894.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71966 hypothetical protein jhp0173 - Helicobacter pylori (strain J99)
 gb|AAD05754.1| (AE001455) putative [Helicobacter pylori J99]
          Length = 268

 Score = 77.4 bits (189), Expect = 1e-13
 Identities = 43/114 (37%), Positives = 64/114 (55%), Gaps = 5/114 (4%)

Query: 136 KVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASIPKGYYLQIGAXLNAP 195
           KV  K K+AHK +      +P  K+  + E  K   K N K  ++ KG+YLQ+G   + P
Sbjct: 158 KVAPKDKEAHKDKAKHAAKEPKVKKEARKEVSK---KANSK-TNLTKGHYLQVGVFAHTP 213

Query: 196 SKDFLQTLKTFPYQIKKKDSLTHYFIGPYKTKEEALKQLENAIKSFKNKPVLVE 249
           +K FLQ    FP++I+ + +   Y IGPYK+K+EAL   +   K    KPV++E
Sbjct: 214 NKAFLQEFNQFPHKIEDRGATKRYLIGPYKSKQEALMHADEVSKKM-TKPVVIE 266



>ref|NP_206984.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64543 hypothetical protein HP0185 - Helicobacter pylori (strain 26695)
 gb|AAD07255.1| (AE000538) H. pylori predicted coding region HP0185 [Helicobacter
           pylori 26695]
          Length = 267

 Score = 72.4 bits (176), Expect = 4e-12
 Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 15/119 (12%)

Query: 136 KVKRKIKKAHKQETA-----INQSQPLTKESPKNENKKNLVKPNLKDASIPKGYYLQIGA 190
           K   K K+AHK +       +   +   KE PK  N K          ++ KG+YLQ+G 
Sbjct: 157 KATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKKANSKT---------TLTKGHYLQVGV 207

Query: 191 XLNAPSKDFLQTLKTFPYQIKKKDSLTHYFIGPYKTKEEALKQLENAIKSFKNKPVLVE 249
             + P+K FLQ    FP++I+ + S   Y IGPYK K+EAL   +   K    KPV++E
Sbjct: 208 FAHTPNKAFLQAFNQFPHKIEDRGSTKRYLIGPYKNKQEALMHADEVSKKM-TKPVVIE 265



>ref|NP_248322.1| (NC_000909) purine NTPase [Methanococcus jannaschii]
           [Methanocaldococcus jannaschii]
 sp|Q58718|RA50_METJA DNA double-strand break repair rad50 ATPase
 pir||A64465 hypothetical protein MJ1322 - Methanococcus jannaschii
 gb|AAB99331.1| (U67572) purine NTPase [Methanococcus jannaschii]
           [Methanocaldococcus jannaschii]
          Length = 1005

 Score = 45.1 bits (105), Expect = 7e-04
 Identities = 45/211 (21%), Positives = 93/211 (43%), Gaps = 38/211 (18%)

Query: 33  ESVQNTPKDLPPIQLRLNQVHEELIEMLENMGKGTQYEFPKIKEILEQSEEEWLKVAHEE 92
           ES++N+ K++   +  L  + +E IE+ + +G+    E  ++K+IL++ +E         
Sbjct: 448 ESIENSLKEIEEKKKVLENLQKEKIELNKKLGE-INSEIKRLKKILDELKE--------- 497

Query: 93  CVALVMLISPKASIENSPIYKNCYEAYVKQRIHDLYDFYIESKKVKRKIKKAHKQETAIN 152
                  +  K  +  +PI +N     + Q    L + Y E +++ +KI++  K      
Sbjct: 498 -------VEGKCPLCKTPIDENKKMELINQHKTQLNNKYTELEEINKKIREIEK------ 544

Query: 153 QSQPLTKESPKNENKKNLVKPNLKDASIPKGYYLQIGAXLNAPSKDFLQTLKTFPYQIKK 212
             + L KE  K EN K L           K  YL+  + +    ++    LK +  Q+ +
Sbjct: 545 DIEKLKKEIDKEENLKTL-----------KTLYLEKQSQI----EELELKLKNYKEQLDE 589

Query: 213 KDSLTHYFIGPYKTKEEALKQLENAIKSFKN 243
            +     ++   K  +E L+ +++ +  FKN
Sbjct: 590 INKKISNYVINGKPVDEILEDIKSQLNKFKN 620



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.313    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,835,104
Number of Sequences: 1026957
Number of extensions: 6471180
Number of successful extensions: 19249
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19241
Number of HSP's gapped (non-prelim): 7
length of query: 250
length of database: 324,149,939
effective HSP length: 118
effective length of query: 132
effective length of database: 202,969,013
effective search space: 26791909716
effective search space used: 26791909716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 96 (41.6 bits)