BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645013|ref|NP_207183.1| hypothetical protein
[Helicobacter pylori 26695]
         (76 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207183.1|  (NC_000915) hypothetical protein [Helicoba...   145  1e-34
ref|NP_223713.1|  (NC_000921) putative [Helicobacter pylori ...   140  4e-33
ref|NP_281853.1|  (NC_002163) hypothetical protein Cj0681 [C...    44  4e-04
pir||T47237  myosin II heavy chain [imported] - Naegleria fo...    42  0.002
ref|NP_297051.1|  (NC_002620) conserved hypothetical protein...    39  0.010

>ref|NP_207183.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64568 hypothetical protein HP0385 - Helicobacter pylori (strain 26695)
 gb|AAD07465.1| (AE000555) H. pylori predicted coding region HP0385 [Helicobacter
          pylori 26695]
          Length = 76

 Score =  145 bits (366), Expect = 1e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MMQSLSLLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAK 60
          MMQSLSLLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAK
Sbjct: 1  MMQSLSLLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAK 60

Query: 61 DKGIQGLYDKISDLLS 76
          DKGIQGLYDKISDLLS
Sbjct: 61 DKGIQGLYDKISDLLS 76



>ref|NP_223713.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71862 hypothetical protein jhp0996 - Helicobacter pylori (strain J99)
 gb|AAD06579.1| (AE001528) putative [Helicobacter pylori J99]
          Length = 75

 Score =  140 bits (352), Expect = 4e-33
 Identities = 73/75 (97%), Positives = 75/75 (99%)

Query: 2  MQSLSLLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKD 61
          MQSLSLLNQLGAKIDELIEKI+KQEEEL+ALRQANTTLNAQNEEKDIQIAILYDELSAKD
Sbjct: 1  MQSLSLLNQLGAKIDELIEKIQKQEEELSALRQANTTLNAQNEEKDIQIAILYDELSAKD 60

Query: 62 KGIQGLYDKISDLLS 76
          KGIQGLYDKISDLLS
Sbjct: 61 KGIQGLYDKISDLLS 75



>ref|NP_281853.1| (NC_002163) hypothetical protein Cj0681 [Campylobacter jejuni]
 pir||D81338 hypothetical protein Cj0681 [imported] - Campylobacter jejuni
          (strain NCTC 11168)
 emb|CAB72955.1| (AL139076) hypothetical protein Cj0681 [Campylobacter jejuni]
          Length = 76

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query: 7  LLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQG 66
          ++N +  K++ELIEK  +  E   ALR    ++ AQNE K  QI  L +EL +++   + 
Sbjct: 6  IINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEAKSNQIMRLEEELKSRNIESED 65

Query: 67 LYDKISDLL 75
          +Y KI  +L
Sbjct: 66 IYKKIEAVL 74



>pir||T47237 myosin II heavy chain [imported] - Naegleria fowleri  (fragment)
 gb|AAB01786.1| (U43192) myosin II heavy chain [Naegleria fowleri]
          Length = 746

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 21/67 (31%), Positives = 41/67 (60%)

Query: 8  LNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQGL 67
          LN+   + +EL+ K+KK E++L  L+++   L A+ ++ D +I  L  +L  K++  + L
Sbjct: 33 LNKTNDEKNELVNKLKKAEKDLKNLKKSKDDLQAEKDDSDNRIRKLEQDLREKEQLSENL 92

Query: 68 YDKISDL 74
            +I+DL
Sbjct: 93 AKRIADL 99



>ref|NP_297051.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
 pir||A81677 conserved hypothetical protein TC0677 [imported] - Chlamydia
          muridarum (strain Nigg)
 gb|AAF39497.1| (AE002336) conserved hypothetical protein [Chlamydia muridarum]
          Length = 254

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 21/73 (28%), Positives = 42/73 (56%)

Query: 2  MQSLSLLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKD 61
          +QS+  + +L  K+  L+   K+ + EL  ++   T +  + EEK+ ++  L D++ A +
Sbjct: 5  LQSILAIQELDIKMIRLMRVKKEHQNELAKIQALKTDIRYKVEEKEQEMEKLKDQIKAGE 64

Query: 62 KGIQGLYDKISDL 74
          K IQ + D+I+ L
Sbjct: 65 KRIQEISDQINKL 77



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.308    0.130    0.319 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,809,492
Number of Sequences: 1026957
Number of extensions: 1165101
Number of successful extensions: 12249
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12243
Number of HSP's gapped (non-prelim): 6
length of query: 76
length of database: 324,149,939
effective HSP length: 52
effective length of query: 24
effective length of database: 270,748,175
effective search space: 6497956200
effective search space used: 6497956200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 90 (39.3 bits)