BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645014|ref|NP_207184.1| hypothetical protein
[Helicobacter pylori 26695]
         (78 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223712.1|  (NC_000921) putative [Helicobacter pylori ...   159  8e-39

>ref|NP_223712.1| (NC_000921) putative [Helicobacter pylori J99]
 ref|NP_207184.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 sp|O25148|Y386_HELPY Hypothetical protein HP0386/JHP0995
 pir||B64568 hypothetical protein (HP0386, jhp0995) - Helicobacter pylori
 gb|AAD07468.1| (AE000555) H. pylori predicted coding region HP0386 [Helicobacter
          pylori 26695]
 gb|AAD06580.1| (AE001528) putative [Helicobacter pylori J99]
          Length = 78

 Score =  159 bits (401), Expect = 8e-39
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MSLENDSLEITYLGKRYKISLNNTFSDEMKRTLKERFHNQELNALELLKDYLHESCQNEY 60
          MSLENDSLEITYLGKRYKISLNNTFSDEMKRTLKERFHNQELNALELLKDYLHESCQNEY
Sbjct: 1  MSLENDSLEITYLGKRYKISLNNTFSDEMKRTLKERFHNQELNALELLKDYLHESCQNEY 60

Query: 61 LHNELQKLLEKISSCSIT 78
          LHNELQKLLEKISSCSIT
Sbjct: 61 LHNELQKLLEKISSCSIT 78



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.313    0.130    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,579,519
Number of Sequences: 1026957
Number of extensions: 1532832
Number of successful extensions: 4665
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4664
Number of HSP's gapped (non-prelim): 1
length of query: 78
length of database: 324,149,939
effective HSP length: 54
effective length of query: 24
effective length of database: 268,694,261
effective search space: 6448662264
effective search space used: 6448662264
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 90 (39.3 bits)