BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645016|ref|NP_207186.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(243 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207186.1| (NC_000915) conserved hypothetical protein... 484 e-136
ref|NP_223710.1| (NC_000921) putative [Helicobacter pylori ... 474 e-133
ref|NP_281773.1| (NC_002163) hypothetical protein Cj0590 [C... 201 4e-51
ref|NP_438485.1| (NC_000907) conserved hypothetical protein... 152 3e-36
ref|NP_245922.1| (NC_002663) unknown [Pasteurella multocida... 149 2e-35
pdb|1IM8|A Chain A, Crystal Structure Of Yeco From Haemophi... 145 3e-34
ref|NP_230809.1| (NC_002505) conserved hypothetical protein... 137 8e-32
ref|NP_456472.1| (NC_003198) conserved hypothetical protein... 131 6e-30
ref|NP_416384.1| (NC_000913) orf, hypothetical protein [Esc... 131 7e-30
ref|NP_405602.1| (NC_003143) conserved hypothetical protein... 130 1e-29
ref|NP_288307.1| (NC_002655) orf, hypothetical protein [Esc... 130 1e-29
ref|NP_249466.1| (NC_002516) conserved hypothetical protein... 122 4e-27
ref|NP_634657.1| (NC_003901) hypothetical protein [Methanos... 55 7e-07
ref|NP_347180.1| (NC_003030) SAM-dependent methyltransferas... 50 2e-05
ref|NP_439950.1| (NC_000911) unknown protein [Synechocystis... 47 1e-04
ref|NP_349182.1| (NC_003030) Predicted S-adenosylmethionine... 44 0.002
ref|NP_371995.1| (NC_002758) menaquinone biosynthesis methy... 43 0.003
>ref|NP_207186.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||D64568 conserved hypothetical protein HP0388 - Helicobacter pylori
(strain 26695)
gb|AAD07453.1| (AE000555) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 243
Score = 484 bits (1245), Expect = e-136
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENIYPKSLP 60
MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENIYPKSLP
Sbjct: 1 MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENIYPKSLP 60
Query: 61 KPLIYDLGCSTGNFFIALNRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNARFECMDFLE 120
KPLIYDLGCSTGNFFIALNRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNARFECMDFLE
Sbjct: 61 KPLIYDLGCSTGNFFIALNRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNARFECMDFLE 120
Query: 121 VEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIEL 180
VEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIEL
Sbjct: 121 VEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIEL 180
Query: 181 YYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNFTLLVA 240
YYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNFTLLVA
Sbjct: 181 YYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNFTLLVA 240
Query: 241 RKT 243
RKT
Sbjct: 241 RKT 243
>ref|NP_223710.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71861 hypothetical protein jhp0993 - Helicobacter pylori (strain J99)
gb|AAD06570.1| (AE001528) putative [Helicobacter pylori J99]
Length = 243
Score = 474 bits (1219), Expect = e-133
Identities = 236/243 (97%), Positives = 241/243 (99%)
Query: 1 MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENIYPKSLP 60
MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKEN+Y KSLP
Sbjct: 1 MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENVYHKSLP 60
Query: 61 KPLIYDLGCSTGNFFIALNRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNARFECMDFLE 120
KPLIYDLGCSTGNFFIALN+QIQQ+IELVGIDNSMPMLKKAQEKLKDFNN RFECMDFLE
Sbjct: 61 KPLIYDLGCSTGNFFIALNQQIQQDIELVGIDNSMPMLKKAQEKLKDFNNVRFECMDFLE 120
Query: 121 VEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIEL 180
V+FKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIEL
Sbjct: 121 VKFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIEL 180
Query: 181 YYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNFTLLVA 240
YYLYKQNQGYSHNEIAFKREALENVLVPYSLKEN+ALLESVGFKHVEALFKWVNFTLLVA
Sbjct: 181 YYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVA 240
Query: 241 RKT 243
RKT
Sbjct: 241 RKT 243
>ref|NP_281773.1| (NC_002163) hypothetical protein Cj0590 [Campylobacter jejuni]
pir||E81406 hypothetical protein Cj0590 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75226.1| (AL139075) hypothetical protein Cj0590 [Campylobacter jejuni]
Length = 236
Score = 201 bits (512), Expect = 4e-51
Identities = 110/243 (45%), Positives = 152/243 (62%), Gaps = 10/243 (4%)
Query: 1 MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENIYPKSLP 60
MKD LF +S K+F FD+ VA VFDDM+ RS+P+Y E L L +A+ L N
Sbjct: 2 MKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCGNLLAKILPTNAS----- 56
Query: 61 KPLIYDLGCSTGNFFIALNRQIQQEIELVGIDNSMPMLKKAQEKLKDFN-NARFECMDFL 119
+ DLGCS+ NF I L ++++ +L G+DNS ML+ A+ K K + + F +
Sbjct: 57 ---VCDLGCSSANFLIFL-ANLRKDFKLFGVDNSASMLEVAKSKAKAYGLDISFFEANLC 112
Query: 120 EVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIE 179
E +F F + +QF+RP +R+ LL +IY +L G+L++ EKI+ ED L K +IE
Sbjct: 113 EFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKILYEDAFLSKNIIE 172
Query: 180 LYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNFTLLV 239
LY YK+ QGYS EIA KREALENVL+PYS KEN+ +LE GFK +E++FKW NF +
Sbjct: 173 LYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKKIESIFKWANFETFI 232
Query: 240 ARK 242
A K
Sbjct: 233 AFK 235
>ref|NP_438485.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P43985|YECO_HAEIN Hypothetical protein HI0319
pir||C64006 probable S-adenosylmethionine-dependent methyltransferase HI0319 -
Haemophilus influenzae (strain Rd KW20)
gb|AAC21983.1| (U32717) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 241
Score = 152 bits (384), Expect = 3e-36
Identities = 93/252 (36%), Positives = 141/252 (55%), Gaps = 22/252 (8%)
Query: 1 MKDTLFNESLNKR--FCFDEKVAHVFDDMLERSIPYYHEMLN----LGAYFIAQNLKENI 54
+KDTLF+ + K F FDE VA VF DM++RS+P Y ++ L F+ +
Sbjct: 2 VKDTLFSTPIAKLGDFIFDENVAEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSN--- 58
Query: 55 YPKSLPKPLIYDLGCSTGNFFIALNRQIQQ-EIELVGIDNSMPMLKKAQEKLKDFNN--- 110
+YDLGCS G ++ R I Q ++++GIDNS PM+++ ++ + +++
Sbjct: 59 ---------VYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIP 109
Query: 111 ARFECMDFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSED 170
C D VE K AS L F LQF+ P R LL KIY L NGVL++ EK ED
Sbjct: 110 VEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFED 169
Query: 171 RILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALF 230
++ +I+L++ +K+ GYS E++ KR ALENV+ S++ + L++VGF VE F
Sbjct: 170 TKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELWF 229
Query: 231 KWVNFTLLVARK 242
+ NF ++A K
Sbjct: 230 QCFNFGSMIAVK 241
>ref|NP_245922.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03069.1| (AE006137) unknown [Pasteurella multocida]
Length = 241
Score = 149 bits (377), Expect = 2e-35
Identities = 91/251 (36%), Positives = 139/251 (55%), Gaps = 22/251 (8%)
Query: 2 KDTLFNESLNKR--FCFDEKVAHVFDDMLERSIPYYHEMLN----LGAYFIAQNLKENIY 55
KDTLF+ + K F FDE VA VF DM++RSIP Y ++ L + F+ N
Sbjct: 3 KDTLFSTPIAKLGDFTFDESVAEVFPDMIQRSIPGYANIITAIGMLASRFVTANSN---- 58
Query: 56 PKSLPKPLIYDLGCSTGNFFIALNRQIQQE-IELVGIDNSMPMLKKAQEKLKDFNNA--- 111
+YDLGCS G ++ R I Q ++++G+DNS PM+ + ++ + + +
Sbjct: 59 --------VYDLGCSRGAATLSARRHINQPGVKIIGVDNSQPMVDRCRQHVSAYQSTIPV 110
Query: 112 RFECMDFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDR 171
C D +E + AS L F LQF+ P R LL KIY L NG+L++ EK ED+
Sbjct: 111 DIICDDIRHIEIENASMVILNFTLQFLPPEDRRSLLSKIYQGLQPNGILVLSEKFHFEDQ 170
Query: 172 ILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFK 231
++ +I+L++ +K+ GYS E++ KR ALENV+ S++ + L VGF+ VE F+
Sbjct: 171 NMNALLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIQAHKMRLAEVGFQQVELWFQ 230
Query: 232 WVNFTLLVARK 242
NF ++A K
Sbjct: 231 CFNFGSMIAVK 241
>pdb|1IM8|A Chain A, Crystal Structure Of Yeco From Haemophilus Influenzae
(Hi0319), A Methyltransferase With A Bound S-
Adenosylhomocysteine
pdb|1IM8|B Chain B, Crystal Structure Of Yeco From Haemophilus Influenzae
(Hi0319), A Methyltransferase With A Bound S-
Adenosylhomocysteine
Length = 244
Score = 145 bits (367), Expect = 3e-34
Identities = 91/252 (36%), Positives = 137/252 (54%), Gaps = 22/252 (8%)
Query: 1 MKDTLFNESLNKR--FCFDEKVAHVFDDMLERSIPYYHEMLN----LGAYFIAQNLKENI 54
+KDTLF+ + K F FDE VA VF D ++RS+P Y ++ L F+ +
Sbjct: 5 VKDTLFSTPIAKLGDFIFDENVAEVFPDXIQRSVPGYSNIITAIGXLAERFVTADSN--- 61
Query: 55 YPKSLPKPLIYDLGCSTGNFFIALNRQIQQ-EIELVGIDNSMPMLKKAQEKLKDFNN--- 110
+YDLGCS G ++ R I Q ++++GIDNS P +++ ++ + +++
Sbjct: 62 ---------VYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPXVERCRQHIAAYHSEIP 112
Query: 111 ARFECMDFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSED 170
C D VE K AS L F LQF+ P R LL KIY L NGVL++ EK ED
Sbjct: 113 VEILCNDIRHVEIKNASXVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFED 172
Query: 171 RILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALF 230
++ +I+L++ +K+ GYS E++ KR ALENV S++ + L++VGF VE F
Sbjct: 173 TKINHLLIDLHHQFKRANGYSELEVSQKRTALENVXRTDSIETHKVRLKNVGFSQVELWF 232
Query: 231 KWVNFTLLVARK 242
+ NF +A K
Sbjct: 233 QCFNFGSXIAVK 244
>ref|NP_230809.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||D82234 conserved hypothetical protein VC1164 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94323.1| (AE004196) conserved hypothetical protein [Vibrio cholerae]
Length = 246
Score = 137 bits (346), Expect = 8e-32
Identities = 84/247 (34%), Positives = 138/247 (55%), Gaps = 14/247 (5%)
Query: 2 KDTLFNESLNK--RFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENIYPKSL 59
KDTLF+ ++K F FDE+VA VF DM++RS+P Y +++ + +K
Sbjct: 8 KDTLFSAPIDKIGDFTFDERVAEVFPDMIQRSVPGYSNIISAIGMLAERFVK-------- 59
Query: 60 PKPLIYDLGCSTGNFFIALNRQIQQE-IELVGIDNSMPMLKKAQEKLKDFNN---ARFEC 115
P IYDLGCS G +++ R I+QE +++ +DNS M+++ + L + + +
Sbjct: 60 PHSKIYDLGCSLGAATLSMRRHIKQEGCQIIAVDNSAAMVERCKLHLNAYRSDTPVQVIE 119
Query: 116 MDFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDK 175
D ++ + AS L F LQF+ P R LL+KIY L G+L++ EK + D+ +
Sbjct: 120 ADIRDIAIENASVVVLNFTLQFLAPDDRYALLEKIYAGLRPGGILILSEKFVFSDQEAHE 179
Query: 176 QMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNF 235
+I+L++ +K+ GYS EI+ KR A+ENV+ P S++ + ++GF E F+ NF
Sbjct: 180 LLIDLHHDFKRANGYSELEISQKRSAIENVMRPDSIQTHKQRFATLGFSSFEVWFQCFNF 239
Query: 236 TLLVARK 242
+ A K
Sbjct: 240 GSMFAIK 246
>ref|NP_456472.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_460862.1| (NC_003197) putative SAM-dependent methyltransferases [Salmonella
typhimurium LT2]
gb|AAL20821.1| (AE008785) putative SAM-dependent methyltransferases [Salmonella
typhimurium LT2]
emb|CAD05656.1| (AL627272) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 247
Score = 131 bits (330), Expect = 6e-30
Identities = 81/247 (32%), Positives = 136/247 (54%), Gaps = 14/247 (5%)
Query: 2 KDTLFNESLNKR--FCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENIYPKSL 59
+DTLF+ + + + FDE+VA VF DM++RS+P Y ++++ + ++
Sbjct: 4 RDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQ-------- 55
Query: 60 PKPLIYDLGCSTGNFFIALNRQIQQE-IELVGIDNSMPMLKKAQEKLKDFNNAR-FECM- 116
P +YDLGCS G +++ R I+ E ++ +DNS M+++ + + + E +
Sbjct: 56 PNTQVYDLGCSLGAATLSVRRNIRHEHCRIIAVDNSPAMIERCRRHIDAYKAPTPVEVVE 115
Query: 117 -DFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDK 175
D ++ + AS L F LQF+ P +R+ LL KIY L G L++ EK ED + +
Sbjct: 116 GDIRDITIENASMVVLNFTLQFLEPAERQALLDKIYLGLNPGGALVLSEKFSFEDAKVGE 175
Query: 176 QMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNF 235
+ +++ +K+ GYS EI+ KR LENV++ S++ + A L GF+H E F+ NF
Sbjct: 176 LLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRQAGFEHSELWFQCFNF 235
Query: 236 TLLVARK 242
LVA K
Sbjct: 236 GSLVALK 242
>ref|NP_416384.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P76290|YECO_ECOLI Protein yecO
pir||F64949 probable S-adenosylmethionine-dependent methyltransferase yecO -
Escherichia coli
dbj|BAA15680.1| (D90829) ORF_ID:o337#11~similar to [SwissProt Accession Number
P43985] [Escherichia coli]
gb|AAC74940.1| (AE000280) orf, hypothetical protein [Escherichia coli K12]
Length = 247
Score = 131 bits (329), Expect = 7e-30
Identities = 80/247 (32%), Positives = 136/247 (54%), Gaps = 14/247 (5%)
Query: 2 KDTLFNESLNKR--FCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENIYPKSL 59
+DTLF+ + + + FDE+VA VF DM++RS+P Y ++++ + ++
Sbjct: 4 RDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQ-------- 55
Query: 60 PKPLIYDLGCSTGNFFIALNRQIQQE-IELVGIDNSMPMLKKAQEKLKDFNNARFECM-- 116
P +YDLGCS G +++ R I + +++ IDNS M+++ + + + +
Sbjct: 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE 115
Query: 117 -DFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDK 175
D ++ + AS L F LQF+ P +R+ LL KIY L G L++ EK ED + +
Sbjct: 116 GDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGE 175
Query: 176 QMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNF 235
+ +++ +K+ GYS EI+ KR LENV++ S++ + A L + GF+H E F+ NF
Sbjct: 176 LLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHNAGFEHSELWFQCFNF 235
Query: 236 TLLVARK 242
LVA K
Sbjct: 236 GSLVALK 242
>ref|NP_405602.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC90862.1| (AJ414151) conserved hypothetical protein [Yersinia pestis]
Length = 267
Score = 130 bits (328), Expect = 1e-29
Identities = 83/250 (33%), Positives = 136/250 (54%), Gaps = 20/250 (8%)
Query: 2 KDTLFNESLNKR--FCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENIYPKSL 59
+D+LF + K + FDEKVA VF DM++RS+P Y ++++ I + + P S
Sbjct: 24 RDSLFAAPIAKLGDWTFDEKVAEVFPDMIQRSVPGYSNIISM----IGMLAERFVQPNSQ 79
Query: 60 PKPLIYDLGCSTGNFFIALNRQIQQE-IELVGIDNSMPMLKKAQEKLKDFNNARFEC--- 115
IYDLGCS G +++ R I+ E +++ +DNS M+++ + + F R E
Sbjct: 80 ----IYDLGCSLGAATLSMRRNIKAEGCKIIAVDNSPAMVERCRRHIDAF---RAETPVD 132
Query: 116 ---MDFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRI 172
D L+++ + AS L F LQF+ P R+ LL ++Y L G L++ EK D
Sbjct: 133 VVEADILDIKLENASMVVLNFTLQFLEPANRQRLLNQVYQGLRPGGALVLSEKFSFADHN 192
Query: 173 LDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKW 232
+ + + +++ +K+ GYS EI+ KR LENV++ S++ + L GF+H E F+
Sbjct: 193 VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKNRLHQAGFEHAEVWFQC 252
Query: 233 VNFTLLVARK 242
NF L+A K
Sbjct: 253 FNFGSLIALK 262
>ref|NP_288307.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_310607.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG56860.1|AE005409_5 (AE005409) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB36003.1| (AP002559) hypothetical protein [Escherichia coli O157:H7]
Length = 247
Score = 130 bits (328), Expect = 1e-29
Identities = 80/247 (32%), Positives = 135/247 (54%), Gaps = 14/247 (5%)
Query: 2 KDTLFNESLNKR--FCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENIYPKSL 59
+DTLF+ + + + FDE+VA VF DM++RS+P Y ++++ + ++
Sbjct: 4 RDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQ-------- 55
Query: 60 PKPLIYDLGCSTGNFFIALNRQIQQE-IELVGIDNSMPMLKKAQEKLKDFNNARFECM-- 116
P +YDLGCS G +++ R I + +++ IDNS M+++ + + + +
Sbjct: 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE 115
Query: 117 -DFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDK 175
D ++ + AS L F LQF+ P +R+ LL KIY L G L++ EK ED + +
Sbjct: 116 GDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGE 175
Query: 176 QMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNF 235
+ +++ +K+ GYS EI+ KR LENV++ S++ + A L GF+H E F+ NF
Sbjct: 176 LLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNF 235
Query: 236 TLLVARK 242
LVA K
Sbjct: 236 GSLVALK 242
>ref|NP_249466.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||B83549 conserved hypothetical protein PA0775 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04164.1|AE004512_7 (AE004512) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 246
Score = 122 bits (305), Expect = 4e-27
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 24/239 (10%)
Query: 14 FCFDEKVAHVFDDMLERSIPYYHEMLN----LGAYFIAQNLKENIYPKSLPKPLIYDLGC 69
F F+E V VF DM++RS+P Y ++ LGA F + P ++YDLGC
Sbjct: 18 FVFNEDVVRVFPDMIKRSVPGYPTIVENIGVLGAQF------------AQPNSVLYDLGC 65
Query: 70 STGNFFIALNRQIQQE-IELVGIDNSMPMLKKAQEKLKDFNNARFECM-------DFLEV 121
S G +L R ++ + ++G+DNS M+++ E L + E + D L +
Sbjct: 66 SLGAVTQSLRRHVRNDGCRVIGVDNSHAMIERCSEYLHAQDAMYQELLPVELIEADILAL 125
Query: 122 EFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELY 181
+ + S ++ F LQFV P QR LL++I +L G L++ EK+ D + +L+
Sbjct: 126 DLQPTSLVAMNFTLQFVAPDQRLGLLRRIRQALLPGGALILSEKLRFADAQEHALLTDLH 185
Query: 182 YLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNFTLLVA 240
+K+ GYS EIA KR ALENV++P + +E+ L + GF V F+ +NF ++A
Sbjct: 186 IAFKRANGYSELEIAQKRSALENVMLPDTFEEHRERLLAAGFSRVSQWFQCLNFASMIA 244
>ref|NP_634657.1| (NC_003901) hypothetical protein [Methanosarcina mazei Goe1]
gb|AAM32329.1| (AE013509) hypothetical protein [Methanosarcina mazei Goe1]
Length = 225
Score = 55.1 bits (131), Expect = 7e-07
Identities = 51/233 (21%), Positives = 102/233 (42%), Gaps = 24/233 (10%)
Query: 18 EKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENIYPKSLPKPLIYDLGCSTGNFFIA 77
+ V+ +D+ + IP + + + IA EN P I DLG TG A
Sbjct: 9 DAVSGKYDEQRRKFIPCFDDFYGVSVS-IASVDTEN--------PDILDLGAGTG-LLSA 58
Query: 78 LNRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNARFECMDFLEVEFKE-----ASAFSLL 132
+ E +D S ML+ A+ + + ++ D+ + +F+E SA S+
Sbjct: 59 FLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSI- 117
Query: 133 FVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLYKQNQGYSH 192
+ ++ L K+ Y+ L +G+ + + + E ++ ++ Y +N G +
Sbjct: 118 ---HHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTE 174
Query: 193 NEIA--FKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNFTLLVARKT 243
EIA ++R L+ + + + + L+ GF+ V ++K+ F ++ RKT
Sbjct: 175 EEIAAGYERSKLDKDI---EMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT 224
>ref|NP_347180.1| (NC_003030) SAM-dependent methyltransferase [Clostridium
acetobutylicum]
gb|AAK78520.1|AE007569_7 (AE007569) SAM-dependent methyltransferase [Clostridium
acetobutylicum]
Length = 248
Score = 50.4 bits (119), Expect = 2e-05
Identities = 51/184 (27%), Positives = 83/184 (44%), Gaps = 17/184 (9%)
Query: 64 IYDLGCSTGNFFIALNR--QIQQEIELVGIDNSMPMLKKAQEKLKD-FNNARFECMDFLE 120
I DLGC TG + L+ +I + + GID + ML+K +EK KD + D+
Sbjct: 77 ILDLGCGTG---LELDEIFKINNTVRVTGIDLAENMLRKIKEKHKDKLDRLTLIVGDYFS 133
Query: 121 VEFKEASAFSLLFV--LQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMI 178
+ E + L V L Q+ L KKI SL NGV + + + D
Sbjct: 134 CDIGEKVFDAALSVETLHHFNHEQKIKLYKKIVRSLKDNGVYIEADYMAPNQDYED---- 189
Query: 179 ELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFKWVNFTLL 238
+ + +N+ E+ K + + P +++ + +L GFK VE +FK N +L
Sbjct: 190 ---HCFNENKRI-RLELGIK-DGFYHYDTPCTVENQIKMLYKSGFKSVEKVFKAENTVIL 244
Query: 239 VARK 242
+A+K
Sbjct: 245 LAKK 248
>ref|NP_439950.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
pir||S74478 hypothetical protein slr1115 - Synechocystis sp. (strain PCC 6803)
dbj|BAA16630.1| (D90899) ORF_ID:slr1115~unknown protein [Synechocystis sp. PCC
6803]
Length = 257
Score = 47.4 bits (111), Expect = 1e-04
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 14/177 (7%)
Query: 64 IYDLGCSTGNFFIALNRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNARFECM--DFLEV 121
+ D+GC GN + L + + + +D S PML KA E+++ N + DF V
Sbjct: 74 VLDIGCGAGNNTLRLRQSANYDFNVDLLDLSAPMLMKAAERVQQLNRGLVRTIQGDFRSV 133
Query: 122 EFKEASAFSLLFVLQFVRPMQRE----VLLKKIYNSLALNGVLLVGEKIMSEDRILDKQM 177
S + +L + ++ + +KIYN LA G + + + + E + M
Sbjct: 134 SLPN-STYDVLIAAAVLHHLRDDEDWRQAFQKIYNLLAPGGSVWITDLVSHEQPAVQAMM 192
Query: 178 IELYYLYKQNQG---YSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALFK 231
+ Y Y + G Y + ++ P + + LL SVGF V+ L K
Sbjct: 193 WDRYGDYLVSLGGAEYRDKVFGY----IDREDSPRPVTYQLDLLRSVGFDAVDLLHK 245
>ref|NP_349182.1| (NC_003030) Predicted S-adenosylmethionine-dependent
methyltransferase [Clostridium acetobutylicum]
gb|AAK80522.1|AE007755_5 (AE007755) Predicted S-adenosylmethionine-dependent
methyltransferase [Clostridium acetobutylicum]
Length = 205
Score = 43.9 bits (102), Expect = 0.002
Identities = 45/184 (24%), Positives = 85/184 (45%), Gaps = 34/184 (18%)
Query: 64 IYDLGCSTGNFFIALNRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNARFECMDFLEVEF 123
+ D+GC TGN L ++ +EIE +GID S+ ML+ A+ K K + +F+ F + F
Sbjct: 44 VVDMGCGTGN----LCGELSKEIEALGIDKSLEMLEGAKRKYK---HIKFKIGSFSDKPF 96
Query: 124 --KEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELY 181
K A + + +++ +K + L +G +++G+
Sbjct: 97 IGKWAGVVVTTYAFHGLNSEEKKEAIKNMIGYLKDDGRIIIGD----------------- 139
Query: 182 YLYK---QNQGYSHNEIAFKREALENVL---VPYSLKENVALLESVGFKHVEALFKWVNF 235
Y++K + + + ++ KR+ L V+ L+E ++S+GFK + VNF
Sbjct: 140 YMFKNKAEKEECRNKLLSKKRQDLWEVIDGRYYTDLEELKDYVKSLGFKIISEHI--VNF 197
Query: 236 TLLV 239
T +V
Sbjct: 198 TWIV 201
>ref|NP_371995.1| (NC_002758) menaquinone biosynthesis methyltransferase
[Staphylococcus aureus subsp. aureus Mu50]
ref|NP_374585.1| (NC_002745) menaquinone biosynthesis methyltransferase
[Staphylococcus aureus subsp. aureus N315]
ref|NP_646177.1| (NC_003923) menaquinone biosynthesis methyltransferase
[Staphylococcus aureus subsp. aureus MW2]
dbj|BAB42564.1| (AP003134) menaquinone biosynthesis methyltransferase
[Staphylococcus aureus subsp. aureus N315]
dbj|BAB57633.1| (AP003362) menaquinone biosynthesis methyltransferase
[Staphylococcus aureus subsp. aureus Mu50]
dbj|BAB95225.1| (AP004827) menaquinone biosynthesis methyltransferase
[Staphylococcus aureus subsp. aureus MW2]
Length = 241
Score = 42.7 bits (99), Expect = 0.003
Identities = 32/119 (26%), Positives = 59/119 (48%), Gaps = 1/119 (0%)
Query: 66 DLGCSTGNFFIALNRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNARFECMDFLEVEFKE 125
D+ C TG++ IAL++ + E+ GID S ML+ +EK N + D +E+ F E
Sbjct: 55 DVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAMELPF-E 113
Query: 126 ASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLY 184
++F + + +R + ++ K N + G ++V + + KQM LY+ +
Sbjct: 114 DNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYALYFKF 172
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.140 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,640,211
Number of Sequences: 1026957
Number of extensions: 5464326
Number of successful extensions: 12533
Number of sequences better than 1.0e-02: 17
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12494
Number of HSP's gapped (non-prelim): 17
length of query: 243
length of database: 324,149,939
effective HSP length: 118
effective length of query: 125
effective length of database: 202,969,013
effective search space: 25371126625
effective search space used: 25371126625
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 96 (41.6 bits)