BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645022|ref|NP_207192.1| hypothetical protein
[Helicobacter pylori 26695]
(252 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207192.1| (NC_000915) hypothetical protein [Helicoba... 511 e-144
gb|AAD01686.1| (AF021091) hypothetical protein [Helicobacte... 491 e-138
ref|NP_223704.1| (NC_000921) putative [Helicobacter pylori ... 484 e-136
ref|NP_281479.1| (NC_002163) hypothetical protein Cj0286c [... 71 1e-11
ref|NP_245039.1| (NC_002663) unknown [Pasteurella multocida... 49 5e-05
ref|NP_636343.1| (NC_003902) conserved hypothetical protein... 45 6e-04
ref|NP_641383.1| (NC_003919) conserved hypothetical protein... 45 0.001
ref|NP_415057.1| (NC_000913) orf, hypothetical protein [Esc... 42 0.005
>ref|NP_207192.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64569 probable phosphoesterase (EC 3.1.-.-) HP0394 - Helicobacter pylori
(strain 26695)
gb|AAD07466.1| (AE000555) H. pylori predicted coding region HP0394 [Helicobacter
pylori 26695]
Length = 252
Score = 511 bits (1317), Expect = e-144
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MLETYALKNGAVFISDAHFLPKSPHLIHTLKELLSAKPPQVFFMGDIFHVLVGYLPLDKE 60
MLETYALKNGAVFISDAHFLPKSPHLIHTLKELLSAKPPQVFFMGDIFHVLVGYLPLDKE
Sbjct: 1 MLETYALKNGAVFISDAHFLPKSPHLIHTLKELLSAKPPQVFFMGDIFHVLVGYLPLDKE 60
Query: 61 QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLFQYDNKRFLLAHG 120
QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLFQYDNKRFLLAHG
Sbjct: 61 QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLFQYDNKRFLLAHG 120
Query: 121 DLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFKKLIYQKPVRLWELEPKELQS 180
DLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFKKLIYQKPVRLWELEPKELQS
Sbjct: 121 DLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFKKLIYQKPVRLWELEPKELQS 180
Query: 181 FIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIPLNTPIYCPLPSFYYEQSLFKVS 240
FIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIPLNTPIYCPLPSFYYEQSLFKVS
Sbjct: 181 FIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIPLNTPIYCPLPSFYYEQSLFKVS 240
Query: 241 SSVLEPSQNKDA 252
SSVLEPSQNKDA
Sbjct: 241 SSVLEPSQNKDA 252
>gb|AAD01686.1| (AF021091) hypothetical protein [Helicobacter pylori]
Length = 252
Score = 491 bits (1264), Expect = e-138
Identities = 241/252 (95%), Positives = 245/252 (96%)
Query: 1 MLETYALKNGAVFISDAHFLPKSPHLIHTLKELLSAKPPQVFFMGDIFHVLVGYLPLDKE 60
MLE+Y LK+GAVFISDAHFL KSPHLIHTLKELL KPPQVFFMGDIFHVLVGYLPLDKE
Sbjct: 1 MLESYTLKSGAVFISDAHFLAKSPHLIHTLKELLRVKPPQVFFMGDIFHVLVGYLPLDKE 60
Query: 61 QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLFQYDNKRFLLAHG 120
QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLFQYDNKRFLLAHG
Sbjct: 61 QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLFQYDNKRFLLAHG 120
Query: 121 DLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFKKLIYQKPVRLWELEPKELQS 180
DLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFKKLIYQKPVRLWELEP +LQS
Sbjct: 121 DLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFKKLIYQKPVRLWELEPNKLQS 180
Query: 181 FIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIPLNTPIYCPLPSFYYEQSLFKVS 240
FIEKRLKAYQNYI+DLNIG IDGIIEGHFHLKSGAKIPLN PIYCPLPSFYYEQSLFKVS
Sbjct: 181 FIEKRLKAYQNYIEDLNIGRIDGIIEGHFHLKSGAKIPLNAPIYCPLPSFYYEQSLFKVS 240
Query: 241 SSVLEPSQNKDA 252
SSVLEPSQNKDA
Sbjct: 241 SSVLEPSQNKDA 252
>ref|NP_223704.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71864 hypothetical protein jhp0987 - Helicobacter pylori (strain J99)
gb|AAD06566.1| (AE001527) putative [Helicobacter pylori J99]
Length = 252
Score = 484 bits (1246), Expect = e-136
Identities = 238/252 (94%), Positives = 243/252 (95%)
Query: 1 MLETYALKNGAVFISDAHFLPKSPHLIHTLKELLSAKPPQVFFMGDIFHVLVGYLPLDKE 60
MLETYALK+GAVFISDAHFLPKSPHLIHTLKELLSAKPPQVFFMGDIFHVLVGYLPLDKE
Sbjct: 1 MLETYALKSGAVFISDAHFLPKSPHLIHTLKELLSAKPPQVFFMGDIFHVLVGYLPLDKE 60
Query: 61 QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLFQYDNKRFLLAHG 120
QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQP LFQYDNKRFLLAHG
Sbjct: 61 QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPALFQYDNKRFLLAHG 120
Query: 121 DLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFKKLIYQKPVRLWELEPKELQS 180
DLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYP KK IYQKPVRLWELEPKEL++
Sbjct: 121 DLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPFLKKRIYQKPVRLWELEPKELKA 180
Query: 181 FIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIPLNTPIYCPLPSFYYEQSLFKVS 240
FIEKRLKAYQNYIKDLNI SIDGIIEGHFHLKSG KI + PIYCPLPSFYYEQSLFKVS
Sbjct: 181 FIEKRLKAYQNYIKDLNIDSIDGIIEGHFHLKSGTKIHSSVPIYCPLPSFYYEQSLFKVS 240
Query: 241 SSVLEPSQNKDA 252
SS+LEPSQNKDA
Sbjct: 241 SSLLEPSQNKDA 252
>ref|NP_281479.1| (NC_002163) hypothetical protein Cj0286c [Campylobacter jejuni]
pir||D81447 hypothetical protein Cj0286c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72753.1| (AL139074) hypothetical protein Cj0286c [Campylobacter jejuni]
Length = 205
Score = 70.9 bits (172), Expect = 1e-11
Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 25/201 (12%)
Query: 50 VLVGYLPLDKEQQK-IIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLF 108
+L+G + E K I+L+ L+ ++ Y EGNHDF++ F +V +F Q QP+
Sbjct: 1 MLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFFK-RVKIFNLQEQPIKL 59
Query: 109 QYD---------NKRFL-LAHGDLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPL 158
N F+ LAHGD+F+ +F + L + + FL FLN++ T +
Sbjct: 60 NLHTSKGNNLVLNSAFIKLAHGDIFLPPLLQFTLKTLRNHYLLVFLNFLNII---TRNFI 116
Query: 159 FKKLIYQKPVRLWELEPKELQSFIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIP 218
K++ + + + K+ ++ +KR + Y+ N+G + EGH+H +I
Sbjct: 117 SNKILQNQNKKNLFYQIKDFENLAKKRYEKYE------NLGF--WVCEGHYH--QNHQIN 166
Query: 219 LNTPIYCPLPSFYYEQSLFKV 239
Y L SF YE+S F V
Sbjct: 167 KENIKYLNLASFAYERSFFVV 187
>ref|NP_245039.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02186.1| (AE006045) unknown [Pasteurella multocida]
Length = 239
Score = 48.9 bits (115), Expect = 5e-05
Identities = 57/219 (26%), Positives = 92/219 (41%), Gaps = 31/219 (14%)
Query: 13 FISDAHFLPKSPHLIHTLKELLSAKPPQ---VFFMGDIFHVLVGYLPLDKEQQKII---- 65
FI+D H PHL H + + PQ ++ +GD+F +G D E+ +I
Sbjct: 6 FIADLHLSENRPHLTHLFCDFMQQLAPQAEALYILGDLFDFWIG----DDEESALIHTVQ 61
Query: 66 DLIHALSEISQVFYFE-GNHDF--SMRFVFNSKVMVFERQNQPVLFQYDNKRFLLAHGDL 122
IHALS YF+ GN DF RF + + + L+ + LL HGD
Sbjct: 62 QQIHALSAQGVKCYFQHGNRDFLIGKRFAAACGMTLLPTYQRIALY---GESVLLCHGDT 118
Query: 123 FITK--AYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFKKLIYQKPVRLWELEPKELQS 180
AY+ Y ++ W ++ FL+L PL +L + +R K+ +S
Sbjct: 119 LCIDDVAYQQYRKKVHQKWRQWL--FLHL-------PLKVRLKIAEKIRARSKADKKRKS 169
Query: 181 FIEKRLKAYQNYI-KDLNIGSIDGIIEGHFHLKSGAKIP 218
E+ + +++ + + II GH H + IP
Sbjct: 170 --EEIMDVNPDFVLQTFAQFGVKKIIHGHTHRQHIHHIP 206
>ref|NP_636343.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM40267.1| (AE012194) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 247
Score = 45.4 bits (106), Expect = 6e-04
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 12 VFISDAHFLPKSPHLIHTLKELLSAKPP---QVFFMGDIFHVLVGYLPLDKEQQKIIDLI 68
+FISD H P P + + L + P ++ +GD+F +G + + +
Sbjct: 4 LFISDLHLDPARPAITELFLDFLRTQVPGSDALYILGDLFEAWIGDDTPSTAADAVAEAL 63
Query: 69 HALSEIS-QVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLFQYDNKRFLLAHGDLFIT-- 125
HA++ VF+ GN DF + + + F P + + LL HGDL T
Sbjct: 64 HAVATTGVPVFFMPGNRDFLVGAAYAQRA-GFRILPDPTVIDLYGQPTLLMHGDLLCTDD 122
Query: 126 KAYEFYITQ 134
AY+ + Q
Sbjct: 123 TAYQAFRAQ 131
>ref|NP_641383.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM35919.1| (AE011733) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 247
Score = 44.7 bits (104), Expect = 0.001
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Query: 12 VFISDAHFLPKSPHLIHTLKELLSAKPP---QVFFMGDIFHVLVGYLPLDKEQQKIIDLI 68
+FISD H P P + E L + P ++ +GD+F +G + +
Sbjct: 4 LFISDLHLDPARPAITELFLEFLRTQVPGSDALYILGDLFEAWIGDDTPSTAADAVAVAL 63
Query: 69 HALSEIS-QVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLFQYDNKRFLLAHGDLFIT-- 125
HA+++ VF+ GN DF + + + F P + LL HGDL T
Sbjct: 64 HAVADSGVPVFFMAGNRDFLVGETYAQRA-GFRILPDPTVIDLYGHTTLLMHGDLLCTDD 122
Query: 126 KAYEFYITQ 134
AY+ + Q
Sbjct: 123 TAYQAFRAQ 131
>ref|NP_415057.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P43341|LPXH_ECOLI UDP-2,3-diacylglucosamine hydrolase
pir||C64784 ybbF protein - Escherichia coli
gb|AAB40277.1| (U82664) similar to H. influenzae HI0735 [Escherichia coli]
gb|AAC73626.1| (AE000158) orf, hypothetical protein [Escherichia coli K12]
gb|AAG47820.1|AF311865_1 (AF311865) UDP-2,3-diacylglucosamine hydrolase [Escherichia coli]
Length = 240
Score = 42.4 bits (98), Expect = 0.005
Identities = 53/248 (21%), Positives = 101/248 (40%), Gaps = 31/248 (12%)
Query: 12 VFISDAHFLPKSPHLIHTLKELLSA---KPPQVFFMGDIFHVLVGYLPLDKEQQKIIDLI 68
+FI+D H + P + L+ K ++ +GD+F +G + +K+ I
Sbjct: 4 LFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRKMAAAI 63
Query: 69 HALSEISQVFYF-EGNHDFSM--RFVFNSKVMVFERQNQPVLFQYDNKRFLLAHGDLFIT 125
A+S+ YF GN DF + RF S + + + L+ +R L+ HGD T
Sbjct: 64 KAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELY---GRRVLIMHGDTLCT 120
Query: 126 --KAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLF----KKLIYQKPVRLWELEPKELQ 179
Y+ + ++ W + L L K + K+ K + + ++ +
Sbjct: 121 DDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVV 180
Query: 180 SFIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIPLN-TPIY-CPLPSFYYEQSLF 237
S +EK + +I GH H + ++ N P + L +++ E S+
Sbjct: 181 SAMEKH--------------QVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMV 226
Query: 238 KVSSSVLE 245
KV++ +E
Sbjct: 227 KVTADDVE 234
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.142 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,657,263
Number of Sequences: 1026957
Number of extensions: 6819726
Number of successful extensions: 19530
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19524
Number of HSP's gapped (non-prelim): 8
length of query: 252
length of database: 324,149,939
effective HSP length: 118
effective length of query: 134
effective length of database: 202,969,013
effective search space: 27197847742
effective search space used: 27197847742
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 96 (41.6 bits)