BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645026|ref|NP_207196.1| hypothetical protein
[Helicobacter pylori 26695]
         (182 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207196.1|  (NC_000915) hypothetical protein [Helicoba...   369  e-102
ref|NP_223700.1|  (NC_000921) putative [Helicobacter pylori ...   281  2e-75
ref|NP_563024.1|  (NC_003366) hypothetical protein [Clostrid...    40  0.009

>ref|NP_207196.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64569 hypothetical protein HP0398 - Helicobacter pylori (strain 26695)
 gb|AAD07467.1| (AE000555) H. pylori predicted coding region HP0398 [Helicobacter
           pylori 26695]
          Length = 182

 Score =  369 bits (947), Expect = e-102
 Identities = 182/182 (100%), Positives = 182/182 (100%)

Query: 1   MRFKGVVAFISLAVALGVLAYLFLSVKKEMPATSHAISQTHAISQTNEGLSQTDAKSHDI 60
           MRFKGVVAFISLAVALGVLAYLFLSVKKEMPATSHAISQTHAISQTNEGLSQTDAKSHDI
Sbjct: 1   MRFKGVVAFISLAVALGVLAYLFLSVKKEMPATSHAISQTHAISQTNEGLSQTDAKSHDI 60

Query: 61  DLEENSPTETSHNEKASHNEEDHNNALSQNLDAQESINYPVVEHYSEIPFEEKKREYSKL 120
           DLEENSPTETSHNEKASHNEEDHNNALSQNLDAQESINYPVVEHYSEIPFEEKKREYSKL
Sbjct: 61  DLEENSPTETSHNEKASHNEEDHNNALSQNLDAQESINYPVVEHYSEIPFEEKKREYSKL 120

Query: 121 IIKDLKDYQWWCLKEILKKEQIDYAYDNTKNQPNLIIYLDENKKERLLADLDYYKIRYHA 180
           IIKDLKDYQWWCLKEILKKEQIDYAYDNTKNQPNLIIYLDENKKERLLADLDYYKIRYHA
Sbjct: 121 IIKDLKDYQWWCLKEILKKEQIDYAYDNTKNQPNLIIYLDENKKERLLADLDYYKIRYHA 180

Query: 181 VF 182
           VF
Sbjct: 181 VF 182



>ref|NP_223700.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71864 hypothetical protein jhp0983 - Helicobacter pylori (strain J99)
 gb|AAD06554.1| (AE001527) putative [Helicobacter pylori J99]
          Length = 170

 Score =  281 bits (720), Expect = 2e-75
 Identities = 147/184 (79%), Positives = 155/184 (83%), Gaps = 16/184 (8%)

Query: 1   MRFKGVVAFISLAVALGVLAYLFLSVKKEMPATSHAISQTHAISQTNEGLSQTDAKSHDI 60
           MRFKGVVAFISLAVALGVL YLFLSVKKEMP TSHAISQT+              KSH+I
Sbjct: 1   MRFKGVVAFISLAVALGVLTYLFLSVKKEMPTTSHAISQTNE-------------KSHEI 47

Query: 61  DLEE--NSPTETSHNEKASHNEEDHNNALSQNLDAQESINYPVVEHYSEIPFEEKKREYS 118
           +LEE  N+P  T ++EKA HNEEDH+N L QNLDAQE INYPVVEH+ EIPFEEKKREYS
Sbjct: 48  NLEESPNNPN-TPNDEKAPHNEEDHSNTLFQNLDAQEVINYPVVEHHFEIPFEEKKREYS 106

Query: 119 KLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKNQPNLIIYLDENKKERLLADLDYYKIRY 178
           KLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKN   LIIYLDENKKERLLADLDYYKIRY
Sbjct: 107 KLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKNHSGLIIYLDENKKERLLADLDYYKIRY 166

Query: 179 HAVF 182
           HAVF
Sbjct: 167 HAVF 170



>ref|NP_563024.1| (NC_003366) hypothetical protein [Clostridium perfringens]
 dbj|BAB81814.1| (AP003193) hypothetical protein [Clostridium perfringens]
          Length = 348

 Score = 40.4 bits (93), Expect = 0.009
 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 14 VALGVLAYLFL-----SVKKEMPATSHAISQTHAISQTNEGLSQTDAKSHDIDLEENSPT 68
          + +G+ ++L L     + K +M   ++++ +   +S  +E   + + K  D+  EENS  
Sbjct: 7  IIIGLASFLVLIAVGFAAKSKMNVKNNSVMEEAVVSSASENSEEVNEKDKDMTKEENSND 66

Query: 69 ETSHNEKASHNEEDHNNALSQNLDAQE 95
          +T+ +  AS N+ED N  +  N D+ +
Sbjct: 67 DTTSS--ASKNDEDVNGDIKNNTDSNK 91



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.313    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,029,713
Number of Sequences: 1026957
Number of extensions: 4760866
Number of successful extensions: 18500
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18493
Number of HSP's gapped (non-prelim): 3
length of query: 182
length of database: 324,149,939
effective HSP length: 114
effective length of query: 68
effective length of database: 207,076,841
effective search space: 14081225188
effective search space used: 14081225188
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 93 (40.4 bits)