BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644672|ref|NP_206842.1| hypothetical protein
[Helicobacter pylori 26695]
(123 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206842.1| (NC_000915) hypothetical protein [Helicoba... 250 2e-66
emb|CAA10657.1| (AJ132366) ComB3 protein [Helicobacter pylori] 207 1e-53
ref|NP_222758.1| (NC_000921) DNA transformation compentancy... 205 8e-53
>ref|NP_206842.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64525 hypothetical protein HP0041 - Helicobacter pylori (strain 26695)
gb|AAD07121.1| (AE000526) H. pylori predicted coding region HP0041 [Helicobacter
pylori 26695]
Length = 123
Score = 250 bits (638), Expect = 2e-66
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP 60
MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP
Sbjct: 1 MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP 60
Query: 61 TNTESSKDATIKALQEQLKAALKALNSKEMNHSKEETFKNPPIDLKQTQTPLKKTFLQSN 120
TNTESSKDATIKALQEQLKAALKALNSKEMNHSKEETFKNPPIDLKQTQTPLKKTFLQSN
Sbjct: 61 TNTESSKDATIKALQEQLKAALKALNSKEMNHSKEETFKNPPIDLKQTQTPLKKTFLQSN 120
Query: 121 GIY 123
GIY
Sbjct: 121 GIY 123
>emb|CAA10657.1| (AJ132366) ComB3 protein [Helicobacter pylori]
Length = 376
Score = 207 bits (528), Expect = 1e-53
Identities = 103/116 (88%), Positives = 107/116 (91%), Gaps = 2/116 (1%)
Query: 1 MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP 60
MNKWLKG IVF+GGFATI TISL+YHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP
Sbjct: 1 MNKWLKGVIVFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP 60
Query: 61 TNTESSKDATIKALQEQLKAALKALNSKEMNHSKEETFKNPPIDLKQTQTPLKKTF 116
TNTESSKDATIKALQEQLKAALKALNSKEMN+SKEETFK+PPID TP KK F
Sbjct: 61 TNTESSKDATIKALQEQLKAALKALNSKEMNYSKEETFKSPPID--PNTTPPKKDF 114
>ref|NP_222758.1| (NC_000921) DNA transformation compentancy [Helicobacter pylori
J99]
pir||B71981 DNA transformation compentancy - Helicobacter pylori (strain J99)
gb|AAD05623.1| (AE001443) DNA transformation compentancy [Helicobacter pylori J99]
Length = 376
Score = 205 bits (521), Expect = 8e-53
Identities = 102/116 (87%), Positives = 107/116 (91%), Gaps = 2/116 (1%)
Query: 1 MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP 60
MNKW+KGA+VFVGGFATI T SLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP
Sbjct: 1 MNKWIKGAVVFVGGFATITTFSLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP 60
Query: 61 TNTESSKDATIKALQEQLKAALKALNSKEMNHSKEETFKNPPIDLKQTQTPLKKTF 116
TNTESSKDATIKALQEQLKAALKALNSKEMN+SKEETF +PP+D K TP KK F
Sbjct: 61 TNTESSKDATIKALQEQLKAALKALNSKEMNYSKEETFTSPPMDPK--TTPPKKDF 114
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.311 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,105,494
Number of Sequences: 1026957
Number of extensions: 2940580
Number of successful extensions: 9133
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9130
Number of HSP's gapped (non-prelim): 3
length of query: 123
length of database: 324,149,939
effective HSP length: 99
effective length of query: 24
effective length of database: 222,481,196
effective search space: 5339548704
effective search space used: 5339548704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 90 (39.3 bits)