BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645034|ref|NP_207204.1| hypothetical protein
[Helicobacter pylori 26695]
(196 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207204.1| (NC_000915) hypothetical protein [Helicoba... 375 e-103
ref|NP_223692.1| (NC_000921) putative [Helicobacter pylori ... 363 e-100
ref|NP_281875.1| (NC_002163) hypothetical protein Cj0703 [C... 146 1e-34
ref|XP_166660.1| (XM_166660) hypothetical protein XP_166660... 49 4e-05
ref|NP_171807.1| (NM_100190) unknown protein [Arabidopsis t... 44 8e-04
ref|NP_248322.1| (NC_000909) purine NTPase [Methanococcus j... 42 0.005
ref|NP_176681.1| (NM_105175) hypothetical protein [Arabidop... 41 0.009
gb|AAF53604.1| (AE003655) CLIP-190 gene product [alt 1] [Dr... 41 0.009
gb|AAM50756.1| (AY118896) LD05834p [Drosophila melanogaster] 41 0.009
gb|AAD38273.1|AC006193_29 (AC006193) Hypothetical protein [... 41 0.009
ref|NP_609835.1| (NM_135991) CLIP-190 gene product [Drosoph... 41 0.009
>ref|NP_207204.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64570 mismatch-repair recognition - Helicobacter pylori (strain 26695)
gb|AAD07476.1| (AE000556) H. pylori predicted coding region HP0406 [Helicobacter
pylori 26695]
Length = 196
Score = 375 bits (964), Expect = e-103
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MDILDLNKAQAVQQNEQEVEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILEL 60
MDILDLNKAQAVQQNEQEVEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILEL
Sbjct: 1 MDILDLNKAQAVQQNEQEVEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILEL 60
Query: 61 VNLGKIKSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLH 120
VNLGKIKSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLH
Sbjct: 61 VNLGKIKSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLH 120
Query: 121 DKVIGAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKRKY 180
DKVIGAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKRKY
Sbjct: 121 DKVIGAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKRKY 180
Query: 181 RLMWGKVADMSSVNKK 196
RLMWGKVADMSSVNKK
Sbjct: 181 RLMWGKVADMSSVNKK 196
>ref|NP_223692.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71863 hypothetical protein jhp0975 - Helicobacter pylori (strain J99)
gb|AAD06562.1| (AE001527) putative [Helicobacter pylori J99]
Length = 196
Score = 363 bits (932), Expect = e-100
Identities = 189/196 (96%), Positives = 192/196 (97%)
Query: 1 MDILDLNKAQAVQQNEQEVEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILEL 60
MDILDLNKAQAVQQNEQEVEDKE+ESKEPVVLEDLSALAWLELEEFSRLS LPKERILEL
Sbjct: 1 MDILDLNKAQAVQQNEQEVEDKEKESKEPVVLEDLSALAWLELEEFSRLSELPKERILEL 60
Query: 61 VNLGKIKSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLH 120
VN+GKIKSKIS NKLLIDASSGTNALIKKVEN+LISMDMNGRSLEPVFVEKTINTILNLH
Sbjct: 61 VNIGKIKSKISHNKLLIDASSGTNALIKKVENNLISMDMNGRSLEPVFVEKTINTILNLH 120
Query: 121 DKVIGAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKRKY 180
DKVI AKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLL DELNQAREEIEFMKRKY
Sbjct: 121 DKVISAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLHDELNQAREEIEFMKRKY 180
Query: 181 RLMWGKVADMSSVNKK 196
RLMWGKVADMSSVNKK
Sbjct: 181 RLMWGKVADMSSVNKK 196
>ref|NP_281875.1| (NC_002163) hypothetical protein Cj0703 [Campylobacter jejuni]
pir||B81341 hypothetical protein Cj0703 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72977.1| (AL139076) hypothetical protein Cj0703 [Campylobacter jejuni]
Length = 178
Score = 146 bits (368), Expect = 1e-34
Identities = 76/151 (50%), Positives = 103/151 (67%)
Query: 40 WLELEEFSRLSGLPKERILELVNLGKIKSKISSNKLLIDASSGTNALIKKVENSLISMDM 99
+LELEEF +L L ++ + ++ G + K K+ I+A GT +++ S +M
Sbjct: 4 YLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAHQGTFSVVPSSAKSQTAMVN 63
Query: 100 NGRSLEPVFVEKTINTILNLHDKVIGAKDETISAFKNENMFLKDALISMQEVYEEDKKTI 159
+ FVEKTI TILNLH+KV+ AKDET+ A KNEN FLKDAL SMQE+Y+ED+KTI
Sbjct: 64 SMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNENKFLKDALYSMQELYDEDRKTI 123
Query: 160 DLLRDELNQAREEIEFMKRKYRLMWGKVADM 190
+ L +EL AREEIEF+KRKY+LMW K A++
Sbjct: 124 ETLNNELKHAREEIEFLKRKYKLMWSKTAEI 154
>ref|XP_166660.1| (XM_166660) hypothetical protein XP_166660 [Homo sapiens]
Length = 689
Score = 48.5 bits (114), Expect = 4e-05
Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 23/198 (11%)
Query: 12 VQQNEQEVEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILELVNLGKIKSKIS 71
++++ Q+ EDK R+S + + ++ + + + F +E + L + +K+ I
Sbjct: 105 IEKHYQQNEDKMRKSFNQQLADAIAVIKGMYQQFFE-----VEEENVSLQDASTVKTNIL 159
Query: 72 SNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLHDK--------- 122
KL +IK+++ L G F ++T + NL +
Sbjct: 160 LRKL-----KEKEEVIKELKEELDQYKDFGFHKMESFAKETSSPKSNLEKENLEYKVENE 214
Query: 123 ----VIGAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKR 178
+I +E I EN L+D LISM+E+ E+D KTI L D ++ REE+ + K
Sbjct: 215 RLLQIISELEEEIQINLKENSGLEDELISMKEMAEKDHKTIQKLMDSRDRLREELHYEKS 274
Query: 179 KYRLMWGKVADMSSVNKK 196
+ + K + + KK
Sbjct: 275 LVQDVINKQKEDKEMRKK 292
>ref|NP_171807.1| (NM_100190) unknown protein [Arabidopsis thaliana]
gb|AAD25801.1|AC006550_9 (AC006550) Strong similarity to gi|2244833 centromere protein
homolog from Arabidopsis thaliana chromosome 4 contig
gb|Z97337. ESTs gb|T20765 and gb|AA586277 come from
this gene
Length = 1744
Score = 44.3 bits (103), Expect = 8e-04
Identities = 46/207 (22%), Positives = 98/207 (47%), Gaps = 27/207 (13%)
Query: 4 LDLNKAQAVQQNEQEVEDKERESK---EPVVLEDLSALAWLELEEFSRLSGLPKERILEL 60
L+ N + N + + + ER SK E V L+D AL+ ++ E+ + L+ + L
Sbjct: 187 LNFNNVDGKEINAKVLSESERASKAEAEIVALKD--ALSKVQAEKEASLAQFDQN----L 240
Query: 61 VNLGKIKSKIS----SNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTI 116
L ++S++S +++LI+ ++ A ++ + SL +++ S + ++ + I
Sbjct: 241 EKLSNLESEVSRAQEDSRVLIERATRAEAEVETLRESLSKVEVEKES-SLLQYQQCLQNI 299
Query: 117 LNLHDKV------IGAKDETISAFKNENMFLKDALISMQE-------VYEEDKKTIDLLR 163
+L D++ G DE + + E + LK +L+S + Y++ KTI L
Sbjct: 300 ADLEDRISLAQKEAGEVDERANRAEAETLALKQSLVSSETDKEAALVQYQQCLKTISNLE 359
Query: 164 DELNQAREEIEFMKRKYRLMWGKVADM 190
+ L++A E+ ++ G+V +
Sbjct: 360 ERLHKAEEDSRLTNQRAENAEGEVESL 386
>ref|NP_248322.1| (NC_000909) purine NTPase [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
sp|Q58718|RA50_METJA DNA double-strand break repair rad50 ATPase
pir||A64465 hypothetical protein MJ1322 - Methanococcus jannaschii
gb|AAB99331.1| (U67572) purine NTPase [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 1005
Score = 41.6 bits (96), Expect = 0.005
Identities = 48/200 (24%), Positives = 96/200 (48%), Gaps = 29/200 (14%)
Query: 5 DLNKAQAVQQNEQEVEDKERE----SKEPVVLEDLSALAWLELEEFSRLSGLPKERILEL 60
+LNK + ++ ++DK E KE + +E+ +L + + +E+ L+ E++ EL
Sbjct: 662 ELNKLREDEREINRLKDKLNELKNKEKELIEIENRRSLKFDKYKEYLGLT----EKLEEL 717
Query: 61 VN----LGKIKSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTI 116
N L +I + +S L ID + +K I + +N + LE V K IN I
Sbjct: 718 KNIKDGLEEIYNICNSKILAIDN------IKRKYNKEDIEIYLNNKILE---VNKEINDI 768
Query: 117 LNLHDKVIGAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFM 176
I K + I+ + E+ +K E+YE ++ +D +R++ + IE++
Sbjct: 769 EE-RISYINQKLDEINYNEEEHKKIK-------ELYENKRQELDNVREQKTEIETGIEYL 820
Query: 177 KRKYRLMWGKVADMSSVNKK 196
K+ + ++ +MS++ K+
Sbjct: 821 KKDVESLKARLKEMSNLEKE 840
>ref|NP_176681.1| (NM_105175) hypothetical protein [Arabidopsis thaliana]
Length = 1318
Score = 40.8 bits (94), Expect = 0.009
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 11/182 (6%)
Query: 2 DILDLNKAQAVQQNEQEVEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILELV 61
+IL + + N ++ E KERE+ +E+LS + L + + L G+ +V
Sbjct: 893 EILSDQETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHGM-------VV 945
Query: 62 NLGKIKSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVE--KTINTILNL 119
+ ++SK S + I+ S NA + EN L ++ L+ V KTI+ + +L
Sbjct: 946 EIEDLRSKDSLAQKKIEELSNFNASLLIKENELQAVVCENEELKSKQVSTLKTIDELSDL 1005
Query: 120 HDKVIGAKDETISAFKNENMFLKDALISMQEVYE--EDKKTIDLLRDELNQAREEIEFMK 177
+I + E +A +A +S+Q + E K+T+ ++EL E E +K
Sbjct: 1006 KQSLIHKEKELQAAIVENEKLKAEAALSLQRIEELTNLKQTLIDKQNELQGVFHENEELK 1065
Query: 178 RK 179
K
Sbjct: 1066 AK 1067
>gb|AAF53604.1| (AE003655) CLIP-190 gene product [alt 1] [Drosophila melanogaster]
gb|AAF53605.1| (AE003655) CLIP-190 gene product [alt 2] [Drosophila melanogaster]
Length = 1690
Score = 40.8 bits (94), Expect = 0.009
Identities = 36/191 (18%), Positives = 93/191 (47%), Gaps = 9/191 (4%)
Query: 7 NKAQAVQQNEQEVEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILELVNLGKI 66
NK +++ + ++ + +++ K+ L++ +A EL++ +G K+ ++++ L K+
Sbjct: 1270 NKTSCLKETQDQLLESQKKEKQ---LQEEAAKLSGELQQVQEANGDIKDSLVKVEELVKV 1326
Query: 67 -KSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLHDKVIG 125
+ K+ + +DA TN K+++ L+ N +L+ + T L ++ G
Sbjct: 1327 LEEKLQAATSQLDAQQATN---KELQELLVKSQENEGNLQGESLAVTEK--LQQLEQANG 1381
Query: 126 AKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKRKYRLMWG 185
E + +N L+ L V E KK+ + ++D+L QA+++ ++ + +
Sbjct: 1382 ELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQDKLEQAQQKERTLQEETSKLAE 1441
Query: 186 KVADMSSVNKK 196
+++ + N++
Sbjct: 1442 QLSQLKQANEE 1452
>gb|AAM50756.1| (AY118896) LD05834p [Drosophila melanogaster]
Length = 1689
Score = 40.8 bits (94), Expect = 0.009
Identities = 36/191 (18%), Positives = 93/191 (47%), Gaps = 9/191 (4%)
Query: 7 NKAQAVQQNEQEVEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILELVNLGKI 66
NK +++ + ++ + +++ K+ L++ +A EL++ +G K+ ++++ L K+
Sbjct: 1269 NKTSCLKETQDQLLESQKKEKQ---LQEEAAKLSGELQQVQEANGDIKDSLVKVEELVKV 1325
Query: 67 -KSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLHDKVIG 125
+ K+ + +DA TN K+++ L+ N +L+ + T L ++ G
Sbjct: 1326 LEEKLQAATSQLDAQQATN---KELQELLVKSQENEGNLQGESLAVTEK--LQQLEQANG 1380
Query: 126 AKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKRKYRLMWG 185
E + +N L+ L V E KK+ + ++D+L QA+++ ++ + +
Sbjct: 1381 ELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQDKLEQAQQKERTLQEETSKLAE 1440
Query: 186 KVADMSSVNKK 196
+++ + N++
Sbjct: 1441 QLSQLKQANEE 1451
>gb|AAD38273.1|AC006193_29 (AC006193) Hypothetical protein [Arabidopsis thaliana]
Length = 1313
Score = 40.8 bits (94), Expect = 0.009
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 11/182 (6%)
Query: 2 DILDLNKAQAVQQNEQEVEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILELV 61
+IL + + N ++ E KERE+ +E+LS + L + + L G+ +V
Sbjct: 888 EILSDQETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHGM-------VV 940
Query: 62 NLGKIKSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVE--KTINTILNL 119
+ ++SK S + I+ S NA + EN L ++ L+ V KTI+ + +L
Sbjct: 941 EIEDLRSKDSLAQKKIEELSNFNASLLIKENELQAVVCENEELKSKQVSTLKTIDELSDL 1000
Query: 120 HDKVIGAKDETISAFKNENMFLKDALISMQEVYE--EDKKTIDLLRDELNQAREEIEFMK 177
+I + E +A +A +S+Q + E K+T+ ++EL E E +K
Sbjct: 1001 KQSLIHKEKELQAAIVENEKLKAEAALSLQRIEELTNLKQTLIDKQNELQGVFHENEELK 1060
Query: 178 RK 179
K
Sbjct: 1061 AK 1062
>ref|NP_609835.1| (NM_135991) CLIP-190 gene product [Drosophila melanogaster]
pir||T13030 microtubule binding protein D-CLIP-190 - fruit fly (Drosophila
melanogaster)
gb|AAB96783.1| (AF041382) microtubule binding protein D-CLIP-190 [Drosophila
melanogaster]
Length = 1690
Score = 40.8 bits (94), Expect = 0.009
Identities = 36/191 (18%), Positives = 93/191 (47%), Gaps = 9/191 (4%)
Query: 7 NKAQAVQQNEQEVEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILELVNLGKI 66
NK +++ + ++ + +++ K+ L++ +A EL++ +G K+ ++++ L K+
Sbjct: 1270 NKTSCLKETQDQLLESQKKEKQ---LQEEAAKLSGELQQVQEANGDIKDSLVKVEELVKV 1326
Query: 67 -KSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLHDKVIG 125
+ K+ + +DA TN K+++ L+ N +L+ + T L ++ G
Sbjct: 1327 LEEKLQAATSQLDAQQATN---KELQELLVKSQENEGNLQGESLAVTEK--LQQLEQANG 1381
Query: 126 AKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKRKYRLMWG 185
E + +N L+ L V E KK+ + ++D+L QA+++ ++ + +
Sbjct: 1382 ELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQDKLEQAQQKERTLQEETSKLAE 1441
Query: 186 KVADMSSVNKK 196
+++ + N++
Sbjct: 1442 QLSQLKQANEE 1452
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.311 0.130 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,166,673
Number of Sequences: 1026957
Number of extensions: 4163695
Number of successful extensions: 22568
Number of sequences better than 1.0e-02: 11
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 22548
Number of HSP's gapped (non-prelim): 26
length of query: 196
length of database: 324,149,939
effective HSP length: 115
effective length of query: 81
effective length of database: 206,049,884
effective search space: 16690040604
effective search space used: 16690040604
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 94 (40.8 bits)