BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645036|ref|NP_207206.1| hypothetical protein
[Helicobacter pylori 26695]
         (162 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207206.1|  (NC_000915) hypothetical protein [Helicoba...   325  1e-88
ref|NP_223690.1|  (NC_000921) putative [Helicobacter pylori ...   257  3e-68

>ref|NP_207206.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64570 hypothetical protein HP0408 - Helicobacter pylori (strain 26695)
 gb|AAD07487.1| (AE000557) H. pylori predicted coding region HP0408 [Helicobacter
           pylori 26695]
          Length = 162

 Score =  325 bits (832), Expect = 1e-88
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MNIFQTSLKCCVGLVLSVGVLLGDSKAFKVRVDKSLTPPFLNVLSLAFKQDMKKEVIFVI 60
           MNIFQTSLKCCVGLVLSVGVLLGDSKAFKVRVDKSLTPPFLNVLSLAFKQDMKKEVIFVI
Sbjct: 1   MNIFQTSLKCCVGLVLSVGVLLGDSKAFKVRVDKSLTPPFLNVLSLAFKQDMKKEVIFVI 60

Query: 61  TKSNKLSKKVLCDFDAFLLPETLMSGMPKKALFHKEFLFQSKENKTLYAFSLIDSQYCSK 120
           TKSNKLSKKVLCDFDAFLLPETLMSGMPKKALFHKEFLFQSKENKTLYAFSLIDSQYCSK
Sbjct: 61  TKSNKLSKKVLCDFDAFLLPETLMSGMPKKALFHKEFLFQSKENKTLYAFSLIDSQYCSK 120

Query: 121 GGNYRYELEKLERWFVQKAPELAESYRVNYKNQYNKTQISQK 162
           GGNYRYELEKLERWFVQKAPELAESYRVNYKNQYNKTQISQK
Sbjct: 121 GGNYRYELEKLERWFVQKAPELAESYRVNYKNQYNKTQISQK 162



>ref|NP_223690.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71865 hypothetical protein jhp0973 - Helicobacter pylori (strain J99)
 gb|AAD06547.1| (AE001526) putative [Helicobacter pylori J99]
          Length = 164

 Score =  257 bits (657), Expect = 3e-68
 Identities = 131/163 (80%), Positives = 146/163 (89%), Gaps = 3/163 (1%)

Query: 1   MNIFQTSLKCCVGLVLSVGVLLGDS-KAFKVRVDKSLTPPFLNVLSLAFKQDMKKEVIFV 59
           M++FQTSL  CVGL+   GVLLGDS KA KVRVDK LTPPFLNVLSLAFKQDMK ++IFV
Sbjct: 1   MSVFQTSL--CVGLLFFGGVLLGDSSKALKVRVDKGLTPPFLNVLSLAFKQDMKTDLIFV 58

Query: 60  ITKSNKLSKKVLCDFDAFLLPETLMSGMPKKALFHKEFLFQSKENKTLYAFSLIDSQYCS 119
           +TKSNKLSKKVLCDFDAFLL E +MS MP KALFHKEFLFQSKENKTLY FSLI+SQYCS
Sbjct: 59  VTKSNKLSKKVLCDFDAFLLSEAVMSDMPAKALFHKEFLFQSKENKTLYVFSLINSQYCS 118

Query: 120 KGGNYRYELEKLERWFVQKAPELAESYRVNYKNQYNKTQISQK 162
           KGGNYR++LE+LERWFVQKAPELAES+RV+YK+QY+KTQ   K
Sbjct: 119 KGGNYRHKLERLERWFVQKAPELAESHRVDYKSQYDKTQTKIK 161



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.321    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,929,233
Number of Sequences: 1026957
Number of extensions: 3605411
Number of successful extensions: 7558
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7555
Number of HSP's gapped (non-prelim): 2
length of query: 162
length of database: 324,149,939
effective HSP length: 111
effective length of query: 51
effective length of database: 210,157,712
effective search space: 10718043312
effective search space used: 10718043312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 92 (40.0 bits)