BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645046|ref|NP_207216.1| hypothetical protein
[Helicobacter pylori 26695]
(335 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207216.1| (NC_000915) hypothetical protein [Helicoba... 679 0.0
ref|NP_223683.1| (NC_000921) putative [Helicobacter pylori ... 632 e-180
ref|NP_281998.1| (NC_002163) hypothetical protein Cj0837c [... 72 1e-11
>ref|NP_207216.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64572 hypothetical protein HP0418 - Helicobacter pylori (strain 26695)
gb|AAD07489.1| (AE000557) H. pylori predicted coding region HP0418 [Helicobacter
pylori 26695]
Length = 335
Score = 679 bits (1752), Expect = 0.0
Identities = 335/335 (100%), Positives = 335/335 (100%)
Query: 1 MRLGVNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVAKDHTLIPKALELGAYGI 60
MRLGVNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVAKDHTLIPKALELGAYGI
Sbjct: 1 MRLGVNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVAKDHTLIPKALELGAYGI 60
Query: 61 LYTGEYPVSDRDVAWIKLKDIEHSLNHLFKFCLLNERVVGALLSPIELEIASKIMVSNFV 120
LYTGEYPVSDRDVAWIKLKDIEHSLNHLFKFCLLNERVVGALLSPIELEIASKIMVSNFV
Sbjct: 61 LYTGEYPVSDRDVAWIKLKDIEHSLNHLFKFCLLNERVVGALLSPIELEIASKIMVSNFV 120
Query: 121 WCLKESLEDLFIIEGCKIAFFDKLEWLHLFYKQEHLKEDLKESCLIILNQSFFCSALVYE 180
WCLKESLEDLFIIEGCKIAFFDKLEWLHLFYKQEHLKEDLKESCLIILNQSFFCSALVYE
Sbjct: 121 WCLKESLEDLFIIEGCKIAFFDKLEWLHLFYKQEHLKEDLKESCLIILNQSFFCSALVYE 180
Query: 181 KQEYEFKMPCIFLGSLKRVIQLCEKLQIEFDLNLLGKKEYPLDHCKPFFVNKNLEIAPYG 240
KQEYEFKMPCIFLGSLKRVIQLCEKLQIEFDLNLLGKKEYPLDHCKPFFVNKNLEIAPYG
Sbjct: 181 KQEYEFKMPCIFLGSLKRVIQLCEKLQIEFDLNLLGKKEYPLDHCKPFFVNKNLEIAPYG 240
Query: 241 TTARVIVAETSKELFEMMLQKAFEILSWGKIVVFCRKNSAAFFKKTNPYFYTTQNNLKEQ 300
TTARVIVAETSKELFEMMLQKAFEILSWGKIVVFCRKNSAAFFKKTNPYFYTTQNNLKEQ
Sbjct: 241 TTARVIVAETSKELFEMMLQKAFEILSWGKIVVFCRKNSAAFFKKTNPYFYTTQNNLKEQ 300
Query: 301 LKNLAFNFAFIHGISSHHLESLLNPPFFKKTPTLW 335
LKNLAFNFAFIHGISSHHLESLLNPPFFKKTPTLW
Sbjct: 301 LKNLAFNFAFIHGISSHHLESLLNPPFFKKTPTLW 335
>ref|NP_223683.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71867 hypothetical protein jhp0966 - Helicobacter pylori (strain J99)
gb|AAD06544.1| (AE001525) putative [Helicobacter pylori J99]
Length = 335
Score = 632 bits (1631), Expect = e-180
Identities = 315/335 (94%), Positives = 321/335 (95%)
Query: 1 MRLGVNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVAKDHTLIPKALELGAYGI 60
MRLGVNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVAKDH LIPKALELGAYGI
Sbjct: 1 MRLGVNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVAKDHALIPKALELGAYGI 60
Query: 61 LYTGEYPVSDRDVAWIKLKDIEHSLNHLFKFCLLNERVVGALLSPIELEIASKIMVSNFV 120
LYTGEYP+SDRDVAWIKLKDIEHSLNHLFKFCLLNERVVGALLSPIELEIASKI+VS FV
Sbjct: 61 LYTGEYPLSDRDVAWIKLKDIEHSLNHLFKFCLLNERVVGALLSPIELEIASKIIVSGFV 120
Query: 121 WCLKESLEDLFIIEGCKIAFFDKLEWLHLFYKQEHLKEDLKESCLIILNQSFFCSALVYE 180
WCLKESLEDLFIIEGCKIAFFDKLEWLHLFYKQE LKEDLKES LIILNQSFFCSALVYE
Sbjct: 121 WCLKESLEDLFIIEGCKIAFFDKLEWLHLFYKQERLKEDLKESRLIILNQSFFCSALVYE 180
Query: 181 KQEYEFKMPCIFLGSLKRVIQLCEKLQIEFDLNLLGKKEYPLDHCKPFFVNKNLEIAPYG 240
KQEYE K PCIFL LKRVIQLCEKLQIEFDL+LLGKKE L+HCKPFFVNKNLEIAPYG
Sbjct: 181 KQEYELKTPCIFLEPLKRVIQLCEKLQIEFDLSLLGKKEPALEHCKPFFVNKNLEIAPYG 240
Query: 241 TTARVIVAETSKELFEMMLQKAFEILSWGKIVVFCRKNSAAFFKKTNPYFYTTQNNLKEQ 300
TTARV+VAE SKELFEMMLQKA E LSWGKIVVFCRKNSAAFFKKTNPY YTTQNNLKEQ
Sbjct: 241 TTARVVVAEASKELFEMMLQKALETLSWGKIVVFCRKNSAAFFKKTNPYCYTTQNNLKEQ 300
Query: 301 LKNLAFNFAFIHGISSHHLESLLNPPFFKKTPTLW 335
LKNLAFNFAFI+GISSHHLESLLNPPFFKKTPTLW
Sbjct: 301 LKNLAFNFAFIYGISSHHLESLLNPPFFKKTPTLW 335
>ref|NP_281998.1| (NC_002163) hypothetical protein Cj0837c [Campylobacter jejuni]
pir||E81356 hypothetical protein Cj0837c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73102.1| (AL139076) hypothetical protein Cj0837c [Campylobacter jejuni]
Length = 313
Score = 71.6 bits (174), Expect = 1e-11
Identities = 58/259 (22%), Positives = 119/259 (45%), Gaps = 19/259 (7%)
Query: 12 SLGELQNTP-----SISYFNSIVLSLNKVQKGSLFVAKDHTLIPKALELGAYGILYTGEY 66
+LGEL N S+ ++LN+++ G F D I +A++ GAY I+ +
Sbjct: 5 NLGELLNATLIHEGSVLSVEGFAINLNELKTGFAFFNNDKKEIAQAVKKGAYAIITENDI 64
Query: 67 PVSDRDVAWIKLKDIEHSLNHLFKFCLLNERVVGALLSPIELEIASKIMVSNFVWCLKES 126
+ D+++ + +++++E +L +F ++ L EL + + +
Sbjct: 65 TIEDKEIFYFRVENLERALVRFLRFFCEDKECEFLLFKSYELSLCKAFYFNILKGNIFAD 124
Query: 127 LEDLFIIEGCKIAFFDKLEWLHLFYKQEHLKEDLKESCLIILNQ-SFFCSALVYEKQEYE 185
E L + +I + + +L+ H LK++ +L++ SFF + L+ E ++
Sbjct: 125 FEKLIKAKKGEIFCYCEENYLNKLCTYSH---SLKDANFTLLSRSSFFFTTLICENLYFK 181
Query: 186 -FKMPCIFLGSLKRVIQ-LCEKLQ-IEFDLNLLGKKEYPLDHCKPFFVNKNLEIAPYGTT 242
+P + S ++I L EK Q I FD N +D K +F++ EI P+G++
Sbjct: 182 NLNLPFFYANSFAKIISFLKEKSQKIIFDFN-------KIDDFKIYFIDDKFEITPFGSS 234
Query: 243 ARVIVAETSKELFEMMLQK 261
++ + ++ FE +K
Sbjct: 235 SQAFIVSNNQNTFEFWKEK 253
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.140 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,332,224
Number of Sequences: 1026957
Number of extensions: 8480909
Number of successful extensions: 16958
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16955
Number of HSP's gapped (non-prelim): 3
length of query: 335
length of database: 324,149,939
effective HSP length: 121
effective length of query: 214
effective length of database: 199,888,142
effective search space: 42776062388
effective search space used: 42776062388
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 97 (42.0 bits)