BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645047|ref|NP_207217.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(261 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207217.1| (NC_000915) conserved hypothetical protein... 535 e-151
ref|NP_223682.1| (NC_000921) putative [Helicobacter pylori ... 524 e-148
ref|NP_282126.1| (NC_002163) hypothetical protein Cj0976 [C... 249 2e-65
ref|NP_245277.1| (NC_002663) unknown [Pasteurella multocida... 221 5e-57
ref|NP_439502.1| (NC_000907) conserved hypothetical protein... 220 1e-56
gb|EAA02078.1| (AAAB01002673) ebiP655 [Anopheles gambiae st... 212 4e-54
ref|NP_230808.1| (NC_002505) conserved hypothetical protein... 207 7e-53
ref|NP_288308.1| (NC_002655) putative enzyme [Escherichia c... 207 1e-52
ref|NP_405601.1| (NC_003143) conserved hypothetical protein... 207 1e-52
ref|NP_456473.1| (NC_003198) conserved hypothetical protein... 205 3e-52
ref|NP_460863.1| (NC_003197) putative enzyme [Salmonella ty... 205 3e-52
ref|NP_416385.1| (NC_000913) putative enzyme [Escherichia c... 205 5e-52
ref|NP_249465.1| (NC_002516) conserved hypothetical protein... 202 3e-51
ref|NP_436768.1| (NC_003078) HYPOTHETICAL PROTEIN [Sinorhiz... 60 3e-08
sp|Q9JXI7|UBIG_NEIMB 3-demethylubiquinone-9 3-methyltransfe... 53 4e-06
ref|NP_275022.1| (NC_003112) 3-demethylubiquinone-9 3-methy... 53 4e-06
ref|NP_283237.1| (NC_003116) 3-demethylubiquinone-9 3-methy... 53 4e-06
ref|NP_251861.1| (NC_002516) 3-demethylubiquinone-9 3-methy... 52 8e-06
ref|NP_267062.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococ... 51 1e-05
ref|NP_519019.1| (NC_003295) PROBABLE 3-DEMETHYLUBIQUINONE-... 48 1e-04
sp|Q8Y0Z5|UBIG_RALSO 3-demethylubiquinone-9 3-methyltransfe... 48 1e-04
ref|NP_213532.1| (NC_000918) hemolysin [Aquifex aeolicus] >... 47 2e-04
ref|NP_637624.1| (NC_003902) 3-demethylubiquinone-9 3-methy... 47 2e-04
ref|NP_299749.1| (NC_002488) 3-demethylubiquinone-9 3-methy... 47 3e-04
ref|NP_243753.1| (NC_002570) BH2887~unknown conserved prote... 47 3e-04
gb|AAG42231.1|AF299292_5 (AF299292) ORFY [Staphylococcus in... 46 5e-04
ref|NP_588239.1| (NC_003421) putative ubiquinone biosynthes... 44 0.001
ref|NP_655343.1| (NC_003995) Ubie_methyltran, ubiE/COQ5 met... 44 0.002
ref|NP_350009.1| (NC_003030) S-adenosylmethionine-dependent... 44 0.002
ref|NP_230902.1| (NC_002505) 3-demethylubiquinone-9 3-methy... 43 0.004
ref|NP_347565.1| (NC_003030) SAM-dependent methyltransferas... 42 0.007
ref|NP_470681.1| (NC_003212) weakly similar to arginine N-m... 42 0.009
ref|NP_416735.1| (NC_000913) 3-demethylubiquinone-9 3-methy... 42 0.009
pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Met... 42 0.009
ref|NP_009590.1| (NC_001134) hnRNP methyltransferase; Hmt1p... 42 0.009
ref|NP_288806.1| (NC_002655) 3-demethylubiquinone-9 3-methy... 42 0.009
>ref|NP_207217.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||C64572 conserved hypothetical protein HP0419 - Helicobacter pylori
(strain 26695)
gb|AAD07484.1| (AE000557) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 261
Score = 535 bits (1377), Expect = e-151
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MLICNDKSNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVA 60
MLICNDKSNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVA
Sbjct: 1 MLICNDKSNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVA 60
Query: 61 DVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEK 120
DVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEK
Sbjct: 61 DVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEK 120
Query: 121 YPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAK 180
YPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAK
Sbjct: 121 YPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAK 180
Query: 181 MKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSK 240
MKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSK
Sbjct: 181 MKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSK 240
Query: 241 TLEGYDAPLRGYFKMLKPSKR 261
TLEGYDAPLRGYFKMLKPSKR
Sbjct: 241 TLEGYDAPLRGYFKMLKPSKR 261
>ref|NP_223682.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71867 hypothetical protein jhp0965 - Helicobacter pylori (strain J99)
gb|AAD06545.1| (AE001525) putative [Helicobacter pylori J99]
Length = 261
Score = 524 bits (1350), Expect = e-148
Identities = 257/261 (98%), Positives = 257/261 (98%)
Query: 1 MLICNDKSNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVA 60
MLICNDK NPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVA
Sbjct: 1 MLICNDKFNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVA 60
Query: 61 DVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEK 120
DVGCNNGYYLFKMLEH PKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVED HEK
Sbjct: 61 DVGCNNGYYLFKMLEHKPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDFHEK 120
Query: 121 YPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAK 180
YPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAK
Sbjct: 121 YPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAK 180
Query: 181 MKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSK 240
MKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTD SK
Sbjct: 181 MKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDHSK 240
Query: 241 TLEGYDAPLRGYFKMLKPSKR 261
TLEGYDAPLRGYFKMLKPSKR
Sbjct: 241 TLEGYDAPLRGYFKMLKPSKR 261
>ref|NP_282126.1| (NC_002163) hypothetical protein Cj0976 [Campylobacter jejuni]
pir||E81372 hypothetical protein Cj0976 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73232.1| (AL139076) hypothetical protein Cj0976 [Campylobacter jejuni]
Length = 296
Score = 249 bits (637), Expect = 2e-65
Identities = 126/246 (51%), Positives = 167/246 (67%), Gaps = 8/246 (3%)
Query: 15 EEIMA----LRPWRKGPFEISQIKIDSEWDSSIKWDLVKN-ATPLKDKVVADVGCNNGYY 69
+EI+A L+PWRKGPF+I + ID+EW S IK++++K + K VAD+GCNNGYY
Sbjct: 52 DEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVADIGCNNGYY 111
Query: 70 LFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIF 129
+FKMLE P L+GFDP + + QFE + + I YE LGVEDL Y FDVIF
Sbjct: 112 MFKMLEFNPAKLIGFDPSIKYRLQFELINAL--AKTPIKYELLGVEDL-PSYSLKFDVIF 168
Query: 130 CLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVYFIPS 189
CLGV+YHR P++ LK L L G + LDT+ I+ +IAL P KTY+K+ N+YF+PS
Sbjct: 169 CLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYSKIPNIYFVPS 228
Query: 190 VSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSKTLEGYDAPL 249
+SALK WCER GF+ FE+L+ KT EQRKT++I SLE+FLD D + T+EGY+AP
Sbjct: 229 ISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKDKNLTIEGYEAPK 288
Query: 250 RGYFKM 255
R Y ++
Sbjct: 289 RVYIRI 294
>ref|NP_245277.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02424.1| (AE006070) unknown [Pasteurella multocida]
Length = 321
Score = 221 bits (564), Expect = 5e-57
Identities = 113/239 (47%), Positives = 152/239 (63%), Gaps = 3/239 (1%)
Query: 13 LLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLV-KNATPLKDKVVADVGCNNGYYLF 71
L+ + L PWRKGP+ + I ID EW S KWD V + PLKD+ + DVGC +GY+++
Sbjct: 78 LVYHLKQLMPWRKGPYHLHGIHIDCEWRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMW 137
Query: 72 KMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFCL 131
+M+ G K +VG DP L QFE + + +++ LG+E + AFD +F +
Sbjct: 138 RMVGEGAKIVVGIDPTELFLCQFEAVRKLLNNDRRANLIPLGIEQMQPLA--AFDTVFSM 195
Query: 132 GVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVYFIPSVS 191
GVLYHRKSPL+ L L + L GELVL+TL++D ++ L P YAKMKNVYFIPSV
Sbjct: 196 GVLYHRKSPLDHLSQLKNQLVRGGELVLETLVVDGDINTVLVPADRYAKMKNVYFIPSVP 255
Query: 192 ALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSKTLEGYDAPLR 250
AL W E+VGF+N + V T+ EQRKTD++ +SL DFLD D +KT+EGY AP R
Sbjct: 256 ALINWLEKVGFKNVRCVDVAPTSLAEQRKTDWLENESLIDFLDPCDHTKTIEGYQAPTR 314
>ref|NP_439502.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44167|YECP_HAEIN Protein HI1351
pir||E64026 probable S-adenosylmethionine-dependent methyltransferase HI1351 -
Haemophilus influenzae (strain Rd KW20)
gb|AAC22998.1| (U32814) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 321
Score = 220 bits (560), Expect = 1e-56
Identities = 112/253 (44%), Positives = 159/253 (62%), Gaps = 9/253 (3%)
Query: 5 NDKSNP------KTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLV-KNATPLKDK 57
+D+++P + ++ + L PWRKGP+ + I +D EW S KWD V + +PL+ +
Sbjct: 64 SDRTSPLSEGEKQRIIHHLKQLMPWRKGPYHLFGIHVDCEWRSDFKWDRVLPHLSPLQGR 123
Query: 58 VVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDL 117
+ DVGC +GY++++M+ G K +VG DP L QFE + + +++ LG+E +
Sbjct: 124 TILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFEAVRKLLNNDRRANLIPLGIEQM 183
Query: 118 HEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKT 177
AFD +F +GVLYHRKSPL+ L L + L GELVL+TL++D ++ L P
Sbjct: 184 QPLA--AFDTVFSMGVLYHRKSPLDHLSQLKNQLVKGGELVLETLVVDGDINTVLVPADR 241
Query: 178 YAKMKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTD 237
YAKMKNVYFIPSV+ L W E+VGF N + V TT +EQRKTD++ +SL DFLD D
Sbjct: 242 YAKMKNVYFIPSVATLINWLEKVGFTNVRCVDVATTTLEEQRKTDWLENESLIDFLDPND 301
Query: 238 PSKTLEGYDAPLR 250
SKT+EGY AP R
Sbjct: 302 HSKTIEGYQAPKR 314
>gb|EAA02078.1| (AAAB01002673) ebiP655 [Anopheles gambiae str. PEST]
Length = 322
Score = 212 bits (539), Expect = 4e-54
Identities = 111/246 (45%), Positives = 158/246 (64%), Gaps = 6/246 (2%)
Query: 6 DKSNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLV-KNATPLKDKVVADVGC 64
++ ++LL M PWRKGPF + I ID+EW S KWD V + +PL + V DVGC
Sbjct: 75 ERKKVESLLRHFM---PWRKGPFTVHGIHIDTEWRSDWKWDRVLPHISPLAGRYVLDVGC 131
Query: 65 NNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNA 124
+GY+L++M+ G K VG DP L QFE + F +++ LG+++L E A
Sbjct: 132 GSGYHLWRMVGEGAKLAVGIDPSPLFLCQFEAIRHFAGNDQRAHLLPLGIQELPEL--RA 189
Query: 125 FDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNV 184
FD +F +GVLYHRKSP+E ++ L + LK GELVL+TL+ID ++ L P Y KM+NV
Sbjct: 190 FDTVFSMGVLYHRKSPIEHIEQLRNQLKDDGELVLETLVIDGGVNDVLVPTDRYGKMRNV 249
Query: 185 YFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSKTLEG 244
+FIPS +ALK W ER GF + I+ T+ EQR+TD+++ +SL D+LD T+P+ T+EG
Sbjct: 250 WFIPSSAALKLWVERCGFTDVRIVDENMTSTDEQRRTDWMVNESLSDYLDPTNPALTVEG 309
Query: 245 YDAPLR 250
+ AP R
Sbjct: 310 HPAPKR 315
>ref|NP_230808.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||C82234 conserved hypothetical protein VC1163 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94322.1| (AE004196) conserved hypothetical protein [Vibrio cholerae]
Length = 323
Score = 207 bits (528), Expect = 7e-53
Identities = 107/249 (42%), Positives = 152/249 (60%), Gaps = 3/249 (1%)
Query: 11 KTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWD-LVKNATPLKDKVVADVGCNNGYY 69
K L + PWRKGP+ + I ID+EW S KWD L+ + +PLK+++V DVGC NGY+
Sbjct: 77 KKLEAVLKTFHPWRKGPYHLHGIHIDTEWRSDWKWDRLLPHISPLKNRLVLDVGCGNGYH 136
Query: 70 LFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIF 129
+++ML G + + G DP L QFE + ++++ LG+E + E NAFD +F
Sbjct: 137 MWRMLGEGAQQVFGIDPSELFLIQFEAVRKLLGDDQRVHLLPLGIEQMPEL--NAFDTVF 194
Query: 130 CLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVYFIPS 189
+GVLYHR+SPL+ L L + L GEL+L+TL+++ L P YA+M+NVYF PS
Sbjct: 195 SMGVLYHRRSPLDHLLQLKNQLVAGGELILETLVVEGDEHTVLVPFDRYAQMRNVYFFPS 254
Query: 190 VSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSKTLEGYDAPL 249
ALK W E+ GF + I+ T+ EQR T+++ SL D++D DPSKT+EGY AP
Sbjct: 255 ALALKVWLEKTGFVDVRIVDENITSLGEQRTTEWMTHNSLPDYVDPQDPSKTIEGYPAPR 314
Query: 250 RGYFKMLKP 258
R KP
Sbjct: 315 RAILIAKKP 323
>ref|NP_288308.1| (NC_002655) putative enzyme [Escherichia coli O157:H7 EDL933]
ref|NP_310608.1| (NC_002695) putative enzyme [Escherichia coli O157:H7]
gb|AAG56861.1|AE005409_6 (AE005409) putative enzyme [Escherichia coli O157:H7 EDL933]
dbj|BAB36004.1| (AP002559) putative enzyme [Escherichia coli O157:H7]
Length = 323
Score = 207 bits (526), Expect = 1e-52
Identities = 111/249 (44%), Positives = 152/249 (60%), Gaps = 6/249 (2%)
Query: 11 KTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLV-KNATPLKDKVVADVGCNNGYY 69
+TL+ +M PWRKGPF + + ID+EW S KWD V + + L + + DVGC +GY+
Sbjct: 80 ETLMRNLM---PWRKGPFSLYGVNIDTEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYH 136
Query: 70 LFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIF 129
+++M+ G VG DP L QFE + +++ LG+E L AFD +F
Sbjct: 137 MWRMIGAGAHLAVGIDPTQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL--KAFDTVF 194
Query: 130 CLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVYFIPS 189
+GVLYHR+SPLE L L L +GELVL+TL+ID + L P YA+M+NVYFIPS
Sbjct: 195 SMGVLYHRRSPLEHLWQLKDQLVNEGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPS 254
Query: 190 VSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSKTLEGYDAPL 249
ALK W ++ GF + I V TT +EQR+T++++ +SL DFLD DPSKT+EGY AP
Sbjct: 255 ALALKNWLKKCGFVDIRIADVSVTTTEEQRRTEWMVTESLSDFLDPHDPSKTVEGYPAPK 314
Query: 250 RGYFKMLKP 258
R KP
Sbjct: 315 RAVLIARKP 323
>ref|NP_405601.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC90861.1| (AJ414151) conserved hypothetical protein [Yersinia pestis]
Length = 323
Score = 207 bits (526), Expect = 1e-52
Identities = 109/243 (44%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 17 IMALRPWRKGPFEISQIKIDSEWDSSIKWDLV-KNATPLKDKVVADVGCNNGYYLFKMLE 75
+ AL PWRKGPF + + ID+EW S KW V + +PL + + DVGC +GY+L++M+
Sbjct: 83 LRALMPWRKGPFSLYGLDIDTEWRSDWKWQRVLPHISPLAGRTILDVGCGSGYHLWRMIG 142
Query: 76 HGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLY 135
G VG DP L QFE + +++ LG+E L E AFD +F +GVLY
Sbjct: 143 EGAHLAVGIDPMQLFLCQFEAIRKLLGGDQRAHVLPLGIEQLPELA--AFDTVFSMGVLY 200
Query: 136 HRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVYFIPSVSALKG 195
HR+SPL+ L L + L GELVL+TL+++ L P YA+M+NVYFIPS ALK
Sbjct: 201 HRRSPLDHLYQLKNQLVTDGELVLETLVVEGDSQQVLVPGDRYAQMRNVYFIPSAPALKA 260
Query: 196 WCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSKTLEGYDAPLRGYFKM 255
W E+ GF + I + TT +EQR+TD++ +SL +FLD D SKT+EGY APLR
Sbjct: 261 WLEKCGFVDVRIADMAVTTTEEQRRTDWMTSESLAEFLDPHDHSKTVEGYPAPLRAVLIA 320
Query: 256 LKP 258
KP
Sbjct: 321 RKP 323
>ref|NP_456473.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD05657.1| (AL627272) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 323
Score = 205 bits (522), Expect = 3e-52
Identities = 112/248 (45%), Positives = 150/248 (60%), Gaps = 6/248 (2%)
Query: 12 TLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLV-KNATPLKDKVVADVGCNNGYYL 70
TLL +M PWRKGPF + + ID+EW S KWD V + + L + + DVGC +GY+L
Sbjct: 81 TLLRNLM---PWRKGPFSLYGVDIDTEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHL 137
Query: 71 FKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFC 130
++M+ G VG DP L QFE + +++ LG+E L AFD +F
Sbjct: 138 WRMIGAGAHLAVGIDPTQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL--KAFDTVFS 195
Query: 131 LGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVYFIPSV 190
+GVLYHR+SPLE L L L +GELVL+TL++D + L P YA+M+NVYFIPS
Sbjct: 196 MGVLYHRRSPLEHLWQLKDQLVNEGELVLETLVVDGDENTVLVPGDRYAQMRNVYFIPSA 255
Query: 191 SALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSKTLEGYDAPLR 250
ALK W E+ GF + I V TT +EQR+T++++ +SL DFLD D SKT+EGY AP R
Sbjct: 256 PALKKWLEKCGFVDVRIADVCVTTTEEQRRTEWMVTESLADFLDPNDRSKTVEGYPAPQR 315
Query: 251 GYFKMLKP 258
KP
Sbjct: 316 AVLIARKP 323
>ref|NP_460863.1| (NC_003197) putative enzyme [Salmonella typhimurium LT2]
gb|AAL20822.1| (AE008785) putative enzyme [Salmonella typhimurium LT2]
Length = 323
Score = 205 bits (522), Expect = 3e-52
Identities = 113/248 (45%), Positives = 150/248 (59%), Gaps = 6/248 (2%)
Query: 12 TLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLV-KNATPLKDKVVADVGCNNGYYL 70
TLL +M PWRKGPF + + ID+EW S KWD V + + L + + DVGC +GY+L
Sbjct: 81 TLLRNLM---PWRKGPFSLYGVDIDTEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHL 137
Query: 71 FKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFC 130
++M+ G VG DP L QFE + +++ LG+E L AFD +F
Sbjct: 138 WRMIGAGAHLAVGIDPTQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL--KAFDTVFS 195
Query: 131 LGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVYFIPSV 190
+GVLYHR+SPLE L L L +GELVL+TL+ID + L P YA+M+NVYFIPS
Sbjct: 196 MGVLYHRRSPLEHLWQLKDQLVNEGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSA 255
Query: 191 SALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSKTLEGYDAPLR 250
ALK W E+ GF + I V TT +EQR+T++++ +SL DFLD D SKT+EGY AP R
Sbjct: 256 PALKKWLEKCGFIDVRIADVCVTTTEEQRRTEWMVTESLADFLDPNDRSKTVEGYPAPQR 315
Query: 251 GYFKMLKP 258
KP
Sbjct: 316 AVLIARKP 323
>ref|NP_416385.1| (NC_000913) putative enzyme [Escherichia coli K12]
sp|P76291|YECP_ECOLI Hypothetical protein yecP
pir||G64949 probable S-adenosylmethionine-dependent methyltransferase yecP -
Escherichia coli
dbj|BAA15681.1| (D90829) ORF_ID:o337#12~similar to [SwissProt Accession Number
P44167] [Escherichia coli]
gb|AAC74941.1| (AE000280) putative enzyme [Escherichia coli K12]
Length = 323
Score = 205 bits (521), Expect = 5e-52
Identities = 110/249 (44%), Positives = 151/249 (60%), Gaps = 6/249 (2%)
Query: 11 KTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLV-KNATPLKDKVVADVGCNNGYY 69
+TL+ +M PWRKGPF + + ID+EW S KWD V + + L + + DVGC +GY+
Sbjct: 80 ETLMRNLM---PWRKGPFSLYGVNIDTEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYH 136
Query: 70 LFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIF 129
+++M+ G VG DP L QFE + +++ LG+E L AFD +F
Sbjct: 137 MWRMIGAGAHLAVGIDPTQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL--KAFDTVF 194
Query: 130 CLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVYFIPS 189
+GVLYHR+SPLE L L L +GELVL+TL+ID + L P YA+M+NVYFIPS
Sbjct: 195 SMGVLYHRRSPLEHLWQLKDQLVNEGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPS 254
Query: 190 VSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSKTLEGYDAPL 249
ALK W ++ GF + I V TT +EQR+T++++ +SL DFLD DP KT+EGY AP
Sbjct: 255 ALALKNWLKKCGFVDIRIADVSVTTTEEQRRTEWMVTESLADFLDPHDPGKTVEGYPAPK 314
Query: 250 RGYFKMLKP 258
R KP
Sbjct: 315 RAVLIARKP 323
>ref|NP_249465.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||A83549 conserved hypothetical protein PA0774 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04163.1|AE004512_6 (AE004512) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 322
Score = 202 bits (514), Expect = 3e-51
Identities = 109/254 (42%), Positives = 154/254 (59%), Gaps = 2/254 (0%)
Query: 5 NDKSNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVADVGC 64
+D + + E + L PWRKGPF+ +++D+EW S KW+ V L+ K V DVGC
Sbjct: 71 HDAALQAQMKEALQGLIPWRKGPFDFFGVQVDTEWRSDWKWERVSPHVELRGKRVLDVGC 130
Query: 65 NNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNA 124
NGYY ++ML G +S+VG DP L QF A + E + L +EDL EK
Sbjct: 131 GNGYYQWRMLGAGAESVVGVDPNWLFLCQF-LAAKRYLPELPAWHLPLALEDLPEKL-EG 188
Query: 125 FDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNV 184
FD +F +GVLYHR+SP++ L AL LK GELVL+TL+++ L P+ YA+M+NV
Sbjct: 189 FDTVFSMGVLYHRRSPIDHLLALKDCLKRGGELVLETLVVEGDASTVLVPEDRYAQMRNV 248
Query: 185 YFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSKTLEG 244
+F+PSV+AL+ W R GF + + V T+ +EQR T+++ QSL +FLD D S+T+EG
Sbjct: 249 WFLPSVAALELWLRRAGFADARCVDVSLTSVEEQRSTEWMRFQSLPEFLDPQDRSRTVEG 308
Query: 245 YDAPLRGYFKMLKP 258
AP+R KP
Sbjct: 309 LPAPMRATLVARKP 322
>ref|NP_436768.1| (NC_003078) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC48628.1| (AL603642) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 264
Score = 59.7 bits (143), Expect = 3e-08
Identities = 43/146 (29%), Positives = 72/146 (48%), Gaps = 18/146 (12%)
Query: 13 LLEEIMALRPW----RKGPFEISQIKIDSEWDSSIKWDLVKNATP--LKDKVVADVGCNN 66
+ +EI AL PW R G E + ++ + +KW ++ P L+ + V D+GCN
Sbjct: 11 IAQEISALGPWFHNMRIGGIETAPGHFLGDYPA-VKWKAFRHVVPEDLEGRSVLDIGCNA 69
Query: 67 GYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPF--FDKEKKI--IYESLGVEDLHEKYP 122
G+Y +M ++G D +Q +F A D E ++ +Y++ G+ +
Sbjct: 70 GFYAQEMKRRNAGRVLGIDSDPHYLRQAKFAAEQAGLDIEYRLMSVYDAAGLRE------ 123
Query: 123 NAFDVIFCLGVLYHRKSPLEALKALY 148
FD++ +GVLYH + PL AL LY
Sbjct: 124 -RFDLVIFMGVLYHLRHPLLALDLLY 148
>sp|Q9JXI7|UBIG_NEIMB 3-demethylubiquinone-9 3-methyltransferase
(3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
(DHHB methyltransferase)
Length = 238
Score = 52.8 bits (125), Expect = 4e-06
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 36 DSEWDSSIKWDLVKNATPLK-----------DKVVADVGCNNGYYLFKMLEHGPKSLVGF 84
D WD S ++ + + PL+ K V DVGC G M G + G
Sbjct: 21 DKWWDKSGEFKTLHDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGI 80
Query: 85 DPGVLVKKQFEF--LAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLE 142
D + ++ E L + I YE + VEDL E P++FDV+ C+ ++ H P
Sbjct: 81 D---MAEQSLETARLHAALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAA 137
Query: 143 ALKALYHALKIKGELVLDTL 162
++A + +K G + T+
Sbjct: 138 IVRACANLVKPDGMVFFSTI 157
>ref|NP_275022.1| (NC_003112) 3-demethylubiquinone-9 3-methyltransferase [Neisseria
meningitidis MC58]
pir||H81015 3-demethylubiquinone-9 3-methyltransferase NMB2030 [imported] -
Neisseria meningitidis (group B strain MD58)
gb|AAF42352.1| (AE002552) 3-demethylubiquinone-9 3-methyltransferase [Neisseria
meningitidis MC58]
Length = 242
Score = 52.8 bits (125), Expect = 4e-06
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 36 DSEWDSSIKWDLVKNATPLK-----------DKVVADVGCNNGYYLFKMLEHGPKSLVGF 84
D WD S ++ + + PL+ K V DVGC G M G + G
Sbjct: 25 DKWWDKSGEFKTLHDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGI 84
Query: 85 DPGVLVKKQFEF--LAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLE 142
D + ++ E L + I YE + VEDL E P++FDV+ C+ ++ H P
Sbjct: 85 D---MAEQSLETARLHAALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAA 141
Query: 143 ALKALYHALKIKGELVLDTL 162
++A + +K G + T+
Sbjct: 142 IVRACANLVKPDGMVFFSTI 161
>ref|NP_283237.1| (NC_003116) 3-demethylubiquinone-9 3-methyltransferase [Neisseria
meningitidis Z2491]
sp|Q9JWE6|UBIG_NEIMA 3-demethylubiquinone-9 3-methyltransferase
(3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
(DHHB methyltransferase)
pir||E81957 3-demethylubiquinone-9 3-O-methyltransferase (EC 2.1.1.64) NMA0410
[imported] - Neisseria meningitidis (group A strain
Z2491)
emb|CAB83709.1| (AL162753) 3-demethylubiquinone-9 3-methyltransferase [Neisseria
meningitidis Z2491]
Length = 238
Score = 52.8 bits (125), Expect = 4e-06
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 30/191 (15%)
Query: 36 DSEWDSSIKWDLVKNATPLK-----------DKVVADVGCNNGYYLFKMLEHGPKSLVGF 84
D WD S ++ + + PL+ K V DVGC G M G + G
Sbjct: 21 DKWWDKSGEFKTLHDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGI 80
Query: 85 DPGVLVKKQFEF--LAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLE 142
D + ++ E L + I YE + VEDL E P++FDV+ C+ ++ H P
Sbjct: 81 D---MAEQSLETARLHAALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAA 137
Query: 143 ALKALYHALKIKGELVLDT----------LIIDSPLDIALCPKKTYAKMKNVYFIPSVSA 192
++A +K G + T LI+ + + PK T+ K + +P +
Sbjct: 138 IVRACAKLVKPDGMVFFSTINKNPKSYLHLIVAAEYLLKFVPKGTHDWKK--FIVP--AE 193
Query: 193 LKGWCERVGFE 203
L C + G +
Sbjct: 194 LARMCRQAGLD 204
>ref|NP_251861.1| (NC_002516) 3-demethylubiquinone-9 3-methyltransferase [Pseudomonas
aeruginosa]
sp|Q9HZ63|UBIG_PSEAE 3-demethylubiquinone-9 3-methyltransferase
(3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
(DHHB methyltransferase)
pir||C83249 3-demethylubiquinone-9 3-methyltransferase PA3171 [imported] -
Pseudomonas aeruginosa (strain PAO1)
gb|AAG06559.1|AE004741_4 (AE004741) 3-demethylubiquinone-9 3-methyltransferase [Pseudomonas
aeruginosa]
Length = 232
Score = 51.6 bits (122), Expect = 8e-06
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 23/170 (13%)
Query: 54 LKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPG---VLVKKQFEFLAPFFDKEKKIIYE 110
L K V D+GC G M + G S+ G D G + V + + + + Y
Sbjct: 46 LAGKKVLDIGCGGGILSEAMAQRGA-SVTGIDMGEAPLAVARLHQL-----ESGVAVDYR 99
Query: 111 SLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTL-------- 162
+ E + E+ P FDV+ CL +L H P ++A + +K G++ L T+
Sbjct: 100 QITAEQMAEEMPGQFDVVTCLEMLEHVPDPASVIRACHRLVKPGGQVFLSTINRNPKAYL 159
Query: 163 --IIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFENFEILSV 210
+I + + L P+ T+ K + S L W G E +I+ +
Sbjct: 160 FAVIGAEYILQLLPRGTHDFRKFI----RPSELGAWSREAGLEVKDIIGL 205
>ref|NP_267062.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
gb|AAK05004.1|AE006324_7 (AE006324) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
Length = 245
Score = 50.8 bits (120), Expect = 1e-05
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 33 IKIDSEWDSSIKWDLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKK 92
+K EW +L K +DK V D+GC G++ ++ HG K +VG D L K
Sbjct: 25 LKAAGEWS-----ELEKLLPNFQDKKVLDLGCGYGWHCKYVVNHGAKEVVGID---LSHK 76
Query: 93 QFEFLAPFFDKEKKIIYESLGVEDLHEKYP-NAFDVIFCLGVLYHRKSPLEALKA-LYHA 150
E +A + +KKI Y+ +ED++ +P + FDV+F + +H S E L +
Sbjct: 77 MLE-VALDINNDKKITYQQSAIEDIN--FPADTFDVVFS-SLAFHYISNFEDLVCKISKW 132
Query: 151 LKIKGELVLDTLIIDSPL 168
LK GE + ++ PL
Sbjct: 133 LKKNGEFIFS---VEHPL 147
>ref|NP_519019.1| (NC_003295) PROBABLE 3-DEMETHYLUBIQUINONE-9 3-METHYLTRANSFERASE
PROTEIN [Ralstonia solanacearum]
emb|CAD14600.1| (AL646061) PROBABLE 3-DEMETHYLUBIQUINONE-9 3-METHYLTRANSFERASE
PROTEIN [Ralstonia solanacearum]
Length = 260
Score = 47.8 bits (112), Expect = 1e-04
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 21/173 (12%)
Query: 43 IKWDLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFD 102
++ D +++ PL K V DVGC G M G G+ + ++ +A
Sbjct: 61 LRLDWIQSTAPLAGKRVVDVGCGGGILSESMARAGANV-----KGIDLSRKALRVADLHS 115
Query: 103 KEKKII--YESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLD 160
E + YE + E L + P +FDV+ C+ +L H P ++A +K G +
Sbjct: 116 LEAGVAVDYEEIAAEALAAREPGSFDVVTCMEMLEHVPDPASVVRACATLVKPGGHVFFS 175
Query: 161 TL----------IIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFE 203
T+ +I + + + P+ T+ K + S L G+ G E
Sbjct: 176 TIHRNAKAYLLAVIGAEYVLNMLPRGTHDYAKFI----RPSELAGFARTAGLE 224
>sp|Q8Y0Z5|UBIG_RALSO 3-demethylubiquinone-9 3-methyltransferase
(3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
(DHHB methyltransferase)
Length = 238
Score = 47.8 bits (112), Expect = 1e-04
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 21/173 (12%)
Query: 43 IKWDLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFD 102
++ D +++ PL K V DVGC G M G G+ + ++ +A
Sbjct: 39 LRLDWIQSTAPLAGKRVVDVGCGGGILSESMARAGANV-----KGIDLSRKALRVADLHS 93
Query: 103 KEKKII--YESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLD 160
E + YE + E L + P +FDV+ C+ +L H P ++A +K G +
Sbjct: 94 LEAGVAVDYEEIAAEALAAREPGSFDVVTCMEMLEHVPDPASVVRACATLVKPGGHVFFS 153
Query: 161 TL----------IIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFE 203
T+ +I + + + P+ T+ K + S L G+ G E
Sbjct: 154 TIHRNAKAYLLAVIGAEYVLNMLPRGTHDYAKFI----RPSELAGFARTAGLE 202
>ref|NP_213532.1| (NC_000918) hemolysin [Aquifex aeolicus]
pir||H70367 hemolysin - Aquifex aeolicus
gb|AAC06935.1| (AE000707) hemolysin [Aquifex aeolicus]
Length = 258
Score = 47.4 bits (111), Expect = 2e-04
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 21/187 (11%)
Query: 34 KIDSEWDSSIKWDLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQ 93
K S ++W + + + LKDKVV DVG + G + L+HG K + D G + Q
Sbjct: 55 KYVSRGGEKLEWAIKRFSLDLKDKVVLDVGSSTGGFTDCALQHGAKKVYAVDVG---RGQ 111
Query: 94 FEFLAPFFDKEKKIIYESLGVEDLHEKY-PNAFDVIFCLGVLYHRKSPLEALKALYHALK 152
++ + ++YE +L E++ P D+I C S + + K L + K
Sbjct: 112 MDY--KLRQDPRVVLYEETDARELSEEHVPEKVDLITC------DVSFISSTKVLPNVFK 163
Query: 153 IKGELVLDTLIIDSPLDIALCP---KKTYAKMKNVYFIPSVSALKGWCERVGFENFEILS 209
E L L++ P LCP KK + K AL+ + F IL
Sbjct: 164 FLKEDGL-LLVLVKP-QFELCPRKVKKGVVREKE----HKREALQKVVNFLKENGFRILG 217
Query: 210 VLKTTPK 216
V+K+ PK
Sbjct: 218 VIKSKPK 224
>ref|NP_637624.1| (NC_003902) 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gb|AAM41548.1| (AE012334) 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 239
Score = 47.0 bits (110), Expect = 2e-04
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 43 IKWDLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPK-SLVGFDPGVLVKKQFEFLAPFF 101
++ D V L V DVGC G M G + + + P ++ + L
Sbjct: 43 VRLDYVAARVALPGARVLDVGCGGGLLSEAMARLGAQVTAIDLAPELVKVARLHSL---- 98
Query: 102 DKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDT 161
+ ++ Y VEDL + P +FD + C+ +L H PL ++A LK G L L T
Sbjct: 99 ESSVQVDYRVQSVEDLAAEQPGSFDAVTCMEMLEHVPDPLAIIRACASLLKPGGTLFLST 158
Query: 162 L 162
L
Sbjct: 159 L 159
>ref|NP_299749.1| (NC_002488) 3-demethylubiquinone-9 3-methyltransferase [Xylella
fastidiosa 9a5c]
sp|Q9PAM5|UBIG_XYLFA 3-demethylubiquinone-9 3-methyltransferase
(3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
(DHHB methyltransferase)
pir||H82553 3-demethylubiquinone-9 3-methyltransferase XF2471 [imported] -
Xylella fastidiosa (strain 9a5c)
gb|AAF85269.1|AE004055_7 (AE004055) 3-demethylubiquinone-9 3-methyltransferase [Xylella
fastidiosa 9a5c]
Length = 246
Score = 46.6 bits (109), Expect = 3e-04
Identities = 35/147 (23%), Positives = 59/147 (39%), Gaps = 15/147 (10%)
Query: 43 IKWDLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPK-SLVGFDPGVLVKKQFEFLAPFF 101
++ D + PL V DVGC G + G + + P ++ + L
Sbjct: 43 VRLDYISKRVPLSGARVLDVGCGGGLLSEALARQGAHVTAIDLAPELIKVARLHGL---- 98
Query: 102 DKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDT 161
+ ++ Y +EDL + P FD I C+ +L H P + A H LK G L + T
Sbjct: 99 ESGIQVDYRIQAIEDLLAEQPAPFDAIACMEMLEHVPDPAAIVDACAHLLKPGGRLFVST 158
Query: 162 L----------IIDSPLDIALCPKKTY 178
+ ++ + + L PK T+
Sbjct: 159 INRTLAAFMLAVVGAEYVVRLLPKGTH 185
>ref|NP_243753.1| (NC_002570) BH2887~unknown conserved protein in others [Bacillus
halodurans]
dbj|BAB06606.1| (AP001517) BH2887~unknown conserved protein in others [Bacillus
halodurans]
Length = 261
Score = 46.6 bits (109), Expect = 3e-04
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 46 DLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEK 105
DL++ P + + V D+GC G ++ + G + ++G D + +Q + P D
Sbjct: 31 DLIQWLAPKEGECVLDLGCGTGDLTEQIHQLGSR-VIGVDVSESMIEQAKGKFPHLD--- 86
Query: 106 KIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLD----- 160
++ DL + FD IF VL+ K EAL +Y +LK G V +
Sbjct: 87 ---FQVAEATDL--SFSEKFDAIFSNAVLHWIKDAEEALTVIYRSLKPGGRFVAEFGGKG 141
Query: 161 --TLIIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGF 202
I+++ D ++K + +F PS+ E+VGF
Sbjct: 142 NVETIVNTLADTMSQADSRWSKEELPWFFPSIGQYTSLMEQVGF 185
>gb|AAG42231.1|AF299292_5 (AF299292) ORFY [Staphylococcus intermedius]
gb|AAL05548.1|AF408195_4 (AF408195) unknown [Enterococcus faecalis]
Length = 244
Score = 45.8 bits (107), Expect = 5e-04
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 44 KWDLVKNATP-LKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFD 102
+W+ +K P K K V D+GC G++ +E+G S+VG D + K E +A
Sbjct: 30 EWETLKKMLPDFKGKRVLDLGCGYGWHCIYAMENGASSVVGVD---ISHKMLE-VAKGKT 85
Query: 103 KEKKIIYESLGVEDLHEKYP-NAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELV 158
+I YE +ED+ +P +FDVI ++ +K +Y LK G LV
Sbjct: 86 HFPQIEYECCAIEDV--DFPEESFDVILSSLAFHYVADYENLIKKIYRMLKAGGNLV 140
>ref|NP_588239.1| (NC_003421) putative ubiquinone biosynthesis pathway
methyltransferase [Schizosaccharomyces pombe]
sp|O74421|COQ3_SCHPO Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial
precursor (Dihydroxyhexaprenylbenzoate
methyltransferase) (3,4-dihydroxy-5-hexaprenylbenzoate
methyltransferase) (DHHB methyltransferase) (DHHB-MT)
(DHHB-MTase)
pir||T41026 probable methyltransferase - fission yeast (Schizosaccharomyces
pombe)
emb|CAA19585.1| (AL023860) putative ubiquinone biosynthesis pathway
methyltransferase [Schizosaccharomyces pombe]
Length = 271
Score = 44.3 bits (103), Expect = 0.001
Identities = 33/108 (30%), Positives = 49/108 (44%), Gaps = 6/108 (5%)
Query: 57 KVVADVGCNNGYYLFKMLEHGPK-SLVGFDP-GVLVKKQFEFLAPFFDKEKKIIYESLGV 114
K + D+GC G M G + V P + V K+ L P + + I+ S+
Sbjct: 79 KKILDIGCGGGILSESMARLGASVTAVDASPMAIEVAKKHASLDPVLNGRLEYIHGSVEG 138
Query: 115 EDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTL 162
L P FDV+ C+ VL H + P + L +L +K G LVL T+
Sbjct: 139 SQL----PTTFDVVTCMEVLEHVEQPRDFLFSLMEKVKPNGRLVLSTI 182
>ref|NP_655343.1| (NC_003995) Ubie_methyltran, ubiE/COQ5 methyltransferase family
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 258
Score = 43.9 bits (102), Expect = 0.002
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 40 DSSIKW-DLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLA 98
++ I W +++K T +++K + D+GC G Y ++ G KS+VG D F
Sbjct: 18 NAHISWGEMIKGITNIQNKQIIDIGCGGGIYTKELALMGAKSVVGLD----------FSK 67
Query: 99 PFFDKEKKIIYESLGVEDLH-----EKYPN-AFDVIFCLGVLYHRKSPLEALKALYHALK 152
K+ + +H YPN FD++ V++H + L+ LK
Sbjct: 68 EILQAAKENCSGFSNISFIHGDAHSTPYPNDTFDIVISRAVIHHLQDIPTFLREASRILK 127
Query: 153 IKGELVLDTLIID 165
G L++ I+
Sbjct: 128 KNGVLIVQDRTIE 140
>ref|NP_350009.1| (NC_003030) S-adenosylmethionine-dependent methyltransferase
[Clostridium acetobutylicum]
gb|AAK81349.1|AE007839_3 (AE007839) S-adenosylmethionine-dependent methyltransferase
[Clostridium acetobutylicum]
Length = 207
Score = 43.5 bits (101), Expect = 0.002
Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 15/169 (8%)
Query: 46 DLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEK 105
+++K K V DVGC G L + + SL G D L +K E
Sbjct: 38 EIIKRILRANPKTVLDVGCGTGNVLKILAKDENLSLYGLD---LSEKMIEIAKKNLKGRA 94
Query: 106 KIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIID 165
++ LG + N+FDVI C +H +P + L + LK G TLII
Sbjct: 95 EL---KLGDSENMPWKSNSFDVIVCNASFHHYPNPKKVLIEMKRILKKDG-----TLIIG 146
Query: 166 SPLDIALCPK--KTYAKMKNV--YFIPSVSALKGWCERVGFENFEILSV 210
P + + Y K+ N Y + S ++ + GFE F + +
Sbjct: 147 DPTAPVIYRQILNLYCKISNKGDYKLYSKKEIENIMKECGFEPFNFIHI 195
>ref|NP_230902.1| (NC_002505) 3-demethylubiquinone-9 3-methyltransferase [Vibrio
cholerae]
sp|Q9KSJ9|UBIG_VIBCH 3-demethylubiquinone-9 3-methyltransferase
(3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
(DHHB methyltransferase)
pir||D82221 3-demethylubiquinone-9 3-methyltransferase VC1257 [imported] -
Vibrio cholerae (group O1 strain N16961)
gb|AAF94416.1| (AE004205) 3-demethylubiquinone-9 3-methyltransferase [Vibrio
cholerae]
Length = 245
Score = 42.7 bits (99), Expect = 0.004
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 47 LVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPF-FDKEK 105
+++ A L K V DVGC G M G + + G D G K+ E +
Sbjct: 53 VLEKANGLFGKRVLDVGCGGGILAESMAREGAQ-VTGLDMG---KEPLEVARLHALETGT 108
Query: 106 KIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTL 162
K+ Y VE E P+ +DV+ C+ +L H PL +++ +K G + TL
Sbjct: 109 KLTYIQSTVEAHAEANPHTYDVVTCMEMLEHVPDPLSVIQSCAKLVKPGGHVFFSTL 165
>ref|NP_347565.1| (NC_003030) SAM-dependent methyltransferase [Clostridium
acetobutylicum]
gb|AAK78905.1|AE007608_11 (AE007608) SAM-dependent methyltransferase [Clostridium
acetobutylicum]
Length = 207
Score = 42.0 bits (97), Expect = 0.007
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 10/160 (6%)
Query: 48 VKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKI 107
V + +KDK+ AD GC G+ + L + G D + ++ + A DK+
Sbjct: 30 VLSKVSIKDKITADFGCGTGF-ISLALASDANMVFGLDNSNNMLRELKKSA--HDKKLNN 86
Query: 108 IYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSP 167
IY + + D +F L+H K +A+K +Y LK G +V+ + +
Sbjct: 87 IYLLKSSLTSVTLFDESIDAVFINMALHHIKDAEKAIKEMYRVLKKDGTVVISDVSEHN- 145
Query: 168 LDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFENFEI 207
K +M + + S + W + VGF+N +I
Sbjct: 146 ------GKWAREEMFDEWLGFSNEQIDMWLKNVGFKNIDI 179
>ref|NP_470681.1| (NC_003212) weakly similar to arginine N-methyltransferases
[Listeria innocua]
emb|CAC96576.1| (AL596168) weakly similar to arginine N-methyltransferases
[Listeria innocua]
Length = 243
Score = 41.6 bits (96), Expect = 0.009
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 44 KWDLVKNATP-LKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFD 102
+W K P K V D+GC G++ +HG K +VG D + ++ A
Sbjct: 30 EWHEFKKLLPDFNGKTVLDLGCGFGWHCIYAADHGAKKVVGID----LSERMLTEAKQKT 85
Query: 103 KEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELV 158
+ Y+ +ED+ + P +DVI +++ S + K ++ LK GE +
Sbjct: 86 TSNAVNYKQKAIEDM-DNEPEMYDVIMSSLAIHYVASFQDICKKVHTNLKTGGEFI 140
>ref|NP_416735.1| (NC_000913) 3-demethylubiquinone-9 3-methyltransferase and
2-octaprenyl-6-hydroxy phenol methylase [Escherichia
coli K12]
sp|P17993|UBIG_ECOLI 3-demethylubiquinone-9 3-methyltransferase
(3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
(DHHB methyltransferase)
pir||A47682 3-demethylubiquinone-9 3-O-methyltransferase (EC 2.1.1.64) -
Escherichia coli
emb|CAA68610.1| (Y00544) PufX protein [Escherichia coli]
gb|AAA24714.1| (M87509) ubiquinone synthesis-related protein [Escherichia coli]
gb|AAC75292.1| (AE000313) 3-demethylubiquinone-9 3-methyltransferase and
2-octaprenyl-6-hydroxy phenol methylase [Escherichia
coli K12]
dbj|BAA16049.1| (D90854) 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,
4-benzoquinone methyltransferase, UbiG [Escherichia
coli]
Length = 240
Score = 41.6 bits (96), Expect = 0.009
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 17/171 (9%)
Query: 47 LVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKK 106
+ + A L K V DVGC G M G ++ G D G + + A + +
Sbjct: 48 IAERAGGLFGKKVLDVGCGGGILAESMAREGA-TVTGLDMGFEPLQVAKLHA--LESGIQ 104
Query: 107 IIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTL---- 162
+ Y VE+ K+ +DV+ C+ +L H P ++A +K G++ TL
Sbjct: 105 VDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNG 164
Query: 163 ------IIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFENFEI 207
++ + + + PK T+ K + + L GW ++ + I
Sbjct: 165 KSWLMAVVGAEYILRMVPKGTHDVKKFI----KPAELLGWVDQTSLKERHI 211
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 41.6 bits (96), Expect = 0.009
Identities = 27/84 (32%), Positives = 42/84 (49%), Gaps = 6/84 (7%)
Query: 47 LVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVK--KQFEFLAPFFDKE 104
+++N KDK+V DVGC G +HG K ++G D +++ K+ L F D
Sbjct: 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSD-- 87
Query: 105 KKIIYESLGVEDLHEKYPNAFDVI 128
KI +ED+H +P D+I
Sbjct: 88 -KITLLRGKLEDVHLPFPKV-DII 109
>ref|NP_009590.1| (NC_001134) hnRNP methyltransferase; Hmt1p [Saccharomyces
cerevisiae]
sp|P38074|HMT1_YEAST HNRNP ARGININE N-METHYLTRANSFERASE (ODP1 PROTEIN)
pir||S45890 ODP1 protein - yeast (Saccharomyces cerevisiae)
emb|CAA53689.1| (X76078) YBR0320 [Saccharomyces cerevisiae]
emb|CAA84976.1| (Z35903) ORF YBR034c [Saccharomyces cerevisiae]
prf||2206497N ORF YBR0320 [Saccharomyces cerevisiae]
Length = 348
Score = 41.6 bits (96), Expect = 0.009
Identities = 27/84 (32%), Positives = 42/84 (49%), Gaps = 6/84 (7%)
Query: 47 LVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVK--KQFEFLAPFFDKE 104
+++N KDK+V DVGC G +HG K ++G D +++ K+ L F D
Sbjct: 50 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSD-- 107
Query: 105 KKIIYESLGVEDLHEKYPNAFDVI 128
KI +ED+H +P D+I
Sbjct: 108 -KITLLRGKLEDVHLPFPKV-DII 129
>ref|NP_288806.1| (NC_002655) 3-demethylubiquinone-9 3-methyltransferase and
2-octaprenyl-6-hydroxy phenol methylase [Escherichia
coli O157:H7 EDL933]
ref|NP_311142.1| (NC_002695) 3-demethylubiquinone-9 3-methyltransferase /
2-octaprenyl-6-hydroxy phenol methylase [Escherichia
coli O157:H7]
sp|Q8XE29|UBIG_ECO57 3-demethylubiquinone-9 3-methyltransferase
(3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
(DHHB methyltransferase)
gb|AAG57361.1|AE005455_2 (AE005455) 3-demethylubiquinone-9 3-methyltransferase and
2-octaprenyl-6-hydroxy phenol methylase [Escherichia
coli O157:H7 EDL933]
dbj|BAB36538.1| (AP002560) 3-demethylubiquinone-9 3-methyltransferase /
2-octaprenyl-6-hydroxy phenol methylase [Escherichia
coli O157:H7]
Length = 240
Score = 41.6 bits (96), Expect = 0.009
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 17/171 (9%)
Query: 47 LVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKK 106
+ + A L K V DVGC G M G ++ G D G + + A + +
Sbjct: 48 IAERAGGLFGKKVLDVGCGGGILAESMAREGA-TVTGLDMGFEPLQVAKLHA--LESGIQ 104
Query: 107 IIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTL---- 162
+ Y VE+ K+ +DV+ C+ +L H P ++A +K G++ TL
Sbjct: 105 VDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNG 164
Query: 163 ------IIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFENFEI 207
++ + + + PK T+ K + + L GW ++ + I
Sbjct: 165 KSWLMAVVGAEYILRMVPKGTHDVKKFI----KPAELLGWVDQTSLKERHI 211
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.141 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,225,085
Number of Sequences: 1026957
Number of extensions: 7678632
Number of successful extensions: 14956
Number of sequences better than 1.0e-02: 36
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 14910
Number of HSP's gapped (non-prelim): 36
length of query: 261
length of database: 324,149,939
effective HSP length: 119
effective length of query: 142
effective length of database: 201,942,056
effective search space: 28675771952
effective search space used: 28675771952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)