BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645048|ref|NP_207218.1| hypothetical protein
[Helicobacter pylori 26695]
(142 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207218.1| (NC_000915) hypothetical protein [Helicoba... 281 8e-76
ref|NP_223681.1| (NC_000921) putative [Helicobacter pylori ... 270 2e-72
ref|NP_282127.1| (NC_002163) hypothetical protein Cj0977 [C... 67 3e-11
ref|NP_214448.1| (NC_000918) initiation factor eIF-2B alpha... 57 3e-08
ref|NP_578902.1| (NC_003413) hypothetical protein [Pyrococc... 52 8e-07
ref|NP_143039.1| (NC_000961) hypothetical protein [Pyrococc... 51 2e-06
ref|NP_126759.1| (NC_000868) Nter region of INITIATION FACT... 50 4e-06
>ref|NP_207218.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64572 hypothetical protein HP0420 - Helicobacter pylori (strain 26695)
gb|AAD07490.1| (AE000557) H. pylori predicted coding region HP0420 [Helicobacter
pylori 26695]
Length = 142
Score = 281 bits (719), Expect = 8e-76
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MQESVVRVDYDSLETCKNFKPSVGTELIVLEKDIAHARFKGNESMVYEENFVHAGFVLIA 60
MQESVVRVDYDSLETCKNFKPSVGTELIVLEKDIAHARFKGNESMVYEENFVHAGFVLIA
Sbjct: 1 MQESVVRVDYDSLETCKNFKPSVGTELIVLEKDIAHARFKGNESMVYEENFVHAGFVLIA 60
Query: 61 CNYAALCALNKRHSVVVSNNINFYAPLELNQEALIKAQVIQDGVKKAEIKIEAFVLDIQV 120
CNYAALCALNKRHSVVVSNNINFYAPLELNQEALIKAQVIQDGVKKAEIKIEAFVLDIQV
Sbjct: 61 CNYAALCALNKRHSVVVSNNINFYAPLELNQEALIKAQVIQDGVKKAEIKIEAFVLDIQV 120
Query: 121 LEGMIEIVVFDKKPFKFNFKEE 142
LEGMIEIVVFDKKPFKFNFKEE
Sbjct: 121 LEGMIEIVVFDKKPFKFNFKEE 142
>ref|NP_223681.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71867 hypothetical protein jhp0964 - Helicobacter pylori (strain J99)
gb|AAD06539.1| (AE001525) putative [Helicobacter pylori J99]
Length = 142
Score = 270 bits (690), Expect = 2e-72
Identities = 134/142 (94%), Positives = 140/142 (98%)
Query: 1 MQESVVRVDYDSLETCKNFKPSVGTELIVLEKDIAHARFKGNESMVYEENFVHAGFVLIA 60
MQESVV VDYDSLETCKNFKPSVGTEL+VLEK+IAH RFKGNE+MVYEENFVHAGFVL+A
Sbjct: 1 MQESVVHVDYDSLETCKNFKPSVGTELVVLEKNIAHVRFKGNENMVYEENFVHAGFVLLA 60
Query: 61 CNYAALCALNKRHSVVVSNNINFYAPLELNQEALIKAQVIQDGVKKAEIKIEAFVLDIQV 120
CNYAALCALNK++SVVVSNNINFYAPLELNQEALIKAQVIQDGVKKAEIKIEAFVLDIQV
Sbjct: 61 CNYAALCALNKKYSVVVSNNINFYAPLELNQEALIKAQVIQDGVKKAEIKIEAFVLDIQV 120
Query: 121 LEGMIEIVVFDKKPFKFNFKEE 142
LEGMIEIVVFDKKPFKFNFKEE
Sbjct: 121 LEGMIEIVVFDKKPFKFNFKEE 142
>ref|NP_282127.1| (NC_002163) hypothetical protein Cj0977 [Campylobacter jejuni]
pir||F81372 hypothetical protein Cj0977 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73233.1| (AL139076) hypothetical protein Cj0977 [Campylobacter jejuni]
Length = 192
Score = 67.0 bits (162), Expect = 3e-11
Identities = 40/136 (29%), Positives = 71/136 (51%), Gaps = 3/136 (2%)
Query: 3 ESVVRVDYDSLETCKNFKPSVGTELIVLEKDIAHARFKGNESMVYEEN-FVHAGFVLIAC 61
E + RV + L TC S+ +I ++K+ A + MV ++ + F+ A
Sbjct: 20 EDISRVRAELL-TCPELNTSLAGTIIEIDKNYAKSILITTSEMVADDQGLIFDAFIFAAA 78
Query: 62 NYAALCALNKRHSVVVSNNINFYAPLELNQEALIKAQVIQDGV-KKAEIKIEAFVLDIQV 120
NY A ++NK SV++ + FYAPL+L ++A + D KK ++K+ V ++++
Sbjct: 79 NYVAQASINKEFSVIIGSKCFFYAPLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKM 138
Query: 121 LEGMIEIVVFDKKPFK 136
EG I++V D+ FK
Sbjct: 139 FEGTIQVVSTDEHIFK 154
>ref|NP_214448.1| (NC_000918) initiation factor eIF-2B alpha subunit [Aquifex
aeolicus]
sp|O67879|E2B_AQUAE Putative translation initiation factor eIF-2B (eIF-2B GDP-GTP
exchange factor)
pir||C70481 translation initiation factor eIF-2B alpha chain - Aquifex aeolicus
gb|AAC07840.1| (AE000773) initiation factor eIF-2B alpha subunit [Aquifex
aeolicus]
Length = 456
Score = 57.4 bits (137), Expect = 3e-08
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 35 AHARFKGNESMVYEEN-FVHAGFVLIACNYAALCALNKRHSVVVSNNINFYAPLELNQEA 93
A K ESM ++ VH GF+ A +YA++ A+N + V+ N+ F P+++ E
Sbjct: 25 AEVLLKTQESMKADDKGLVHGGFIFSAADYASMLAVNHPNVVLAGANVKFLKPVKVGDEI 84
Query: 94 LIKAQVIQDGVKKAEIKIEAFVLDIQVLEG 123
+ KA+V +D KK ++ +E F + +V EG
Sbjct: 85 ICKARVSEDKGKKKKVLVECFKGEDKVFEG 114
>ref|NP_578902.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL81297.1| (AE010226) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 130
Score = 52.4 bits (124), Expect = 8e-07
Identities = 29/91 (31%), Positives = 48/91 (51%)
Query: 42 NESMVYEENFVHAGFVLIACNYAALCALNKRHSVVVSNNINFYAPLELNQEALIKAQVIQ 101
+E V E+ VH GF +YAA+ A+N+ V+ + F P+++ L KAQV++
Sbjct: 33 DEMKVDEKGLVHGGFTFGLADYAAMLAVNEPTVVLGKAEVRFTKPVKVGDVLLAKAQVVE 92
Query: 102 DGVKKAEIKIEAFVLDIQVLEGMIEIVVFDK 132
D +K + ++ + + VLEG V DK
Sbjct: 93 DQGRKKIVDVKVYRGEEVVLEGKFYCYVLDK 123
>ref|NP_143039.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||B71055 hypothetical protein PH1136 - Pyrococcus horikoshii
dbj|BAA30236.1| (AP000005) 131aa long hypothetical protein [Pyrococcus horikoshii]
Length = 131
Score = 50.8 bits (120), Expect = 2e-06
Identities = 27/91 (29%), Positives = 50/91 (54%)
Query: 42 NESMVYEENFVHAGFVLIACNYAALCALNKRHSVVVSNNINFYAPLELNQEALIKAQVIQ 101
+E V E+ VH GF +YAA+ A+N+ V+ + F P+++ + + KA++I+
Sbjct: 36 DEMKVDEKGLVHGGFTFGLADYAAMLAVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIE 95
Query: 102 DGVKKAEIKIEAFVLDIQVLEGMIEIVVFDK 132
D KK ++++ + + VLEG V +K
Sbjct: 96 DLGKKKIVEVKVYREEEVVLEGKFYCYVLEK 126
>ref|NP_126759.1| (NC_000868) Nter region of INITIATION FACTOR EIF-2B ALPHA SUBUNIT 1
from AQUIFEX AEOLICUS. [Pyrococcus abyssi]
pir||A75086 translation initiation factor eIF-2b alpha chain 1 truncated
homolog PAB1655 [imported] - Pyrococcus abyssi (strain
Orsay)
emb|CAB49990.1| (AJ248286) Nter region of INITIATION FACTOR EIF-2B ALPHA SUBUNIT 1
from AQUIFEX AEOLICUS. [Pyrococcus abyssi]
Length = 127
Score = 50.1 bits (118), Expect = 4e-06
Identities = 26/91 (28%), Positives = 48/91 (52%)
Query: 42 NESMVYEENFVHAGFVLIACNYAALCALNKRHSVVVSNNINFYAPLELNQEALIKAQVIQ 101
+E V E+ VH GF +YAA+ A+N+ V+ + F P+++ + + KA++I
Sbjct: 33 DEMKVDEKGLVHGGFTFGLADYAAMLAVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIID 92
Query: 102 DGVKKAEIKIEAFVLDIQVLEGMIEIVVFDK 132
D +K + ++ + + VLEG V +K
Sbjct: 93 DQGRKKTVDVKVYRGEDVVLEGKFHCYVLEK 123
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.137 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,162,916
Number of Sequences: 1026957
Number of extensions: 2909438
Number of successful extensions: 5382
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5374
Number of HSP's gapped (non-prelim): 7
length of query: 142
length of database: 324,149,939
effective HSP length: 118
effective length of query: 24
effective length of database: 202,969,013
effective search space: 4871256312
effective search space used: 4871256312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 89 (38.9 bits)