BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645053|ref|NP_207223.1| hypothetical protein
[Helicobacter pylori 26695]
(417 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207223.1| (NC_000915) hypothetical protein [Helicoba... 844 0.0
ref|NP_208201.1| (NC_000915) hypothetical protein [Helicoba... 780 0.0
ref|NP_224021.1| (NC_000921) putative [Helicobacter pylori ... 762 0.0
ref|NP_603278.1| (NC_003454) Single-stranded-DNA-specific e... 54 3e-06
ref|NP_465050.1| (NC_003210) similar to single-stranded-DNA... 51 3e-05
ref|NP_470896.1| (NC_003212) similar to single-stranded-DNA... 50 4e-05
ref|NP_266788.1| (NC_002662) single-stranded DNA specific e... 44 0.004
ref|NP_602809.1| (NC_003454) Single-stranded-DNA-specific e... 44 0.005
>ref|NP_207223.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64573 hypothetical protein HP0425 - Helicobacter pylori (strain 26695)
gb|AAD07494.1| (AE000558) H. pylori predicted coding region HP0425 [Helicobacter
pylori 26695]
Length = 417
Score = 844 bits (2180), Expect = 0.0
Identities = 417/417 (100%), Positives = 417/417 (100%)
Query: 1 MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF
Sbjct: 1 MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
Query: 61 SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA 120
SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA
Sbjct: 61 SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA 120
Query: 121 NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ 180
NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ
Sbjct: 121 NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ 180
Query: 181 IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD 240
IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD
Sbjct: 181 IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD 240
Query: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEF 300
LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEF
Sbjct: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEF 300
Query: 301 KRYNDIKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC 360
KRYNDIKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC
Sbjct: 301 KRYNDIKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC 360
Query: 361 IYRDNKDGYSGSARGGGNFLSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSLQAL 417
IYRDNKDGYSGSARGGGNFLSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSLQAL
Sbjct: 361 IYRDNKDGYSGSARGGGNFLSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSLQAL 417
>ref|NP_208201.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64696 hypothetical protein HP1410 - Helicobacter pylori (strain 26695)
gb|AAD08455.1| (AE000641) H. pylori predicted coding region HP1410 [Helicobacter
pylori 26695]
Length = 394
Score = 780 bits (2015), Expect = 0.0
Identities = 384/387 (99%), Positives = 384/387 (99%)
Query: 1 MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF
Sbjct: 1 MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
Query: 61 SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA 120
SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA
Sbjct: 61 SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA 120
Query: 121 NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ 180
NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ
Sbjct: 121 NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ 180
Query: 181 IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD 240
IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD
Sbjct: 181 IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD 240
Query: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEF 300
LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPIN PRLSVFNVKEF
Sbjct: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINXPRLSVFNVKEF 300
Query: 301 KRYNDIKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC 360
K YND KKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC
Sbjct: 301 KXYNDXKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC 360
Query: 361 IYRDNKDGYSGSARGGGNFLSQIKTIP 387
IYRDNKDGYSGSARGGGNFLSQIKTIP
Sbjct: 361 IYRDNKDGYSGSARGGGNFLSQIKTIP 387
>ref|NP_224021.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71824 hypothetical protein jhp1303 - Helicobacter pylori (strain J99)
gb|AAD06881.1| (AE001553) putative [Helicobacter pylori J99]
Length = 410
Score = 762 bits (1967), Expect = 0.0
Identities = 376/412 (91%), Positives = 394/412 (95%), Gaps = 3/412 (0%)
Query: 1 MPKKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
MPKKELLKMSKKRIFKDFL+E K+HRPI+FYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF
Sbjct: 1 MPKKELLKMSKKRIFKDFLEEVKRHRPIIFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
Query: 61 SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA 120
SPLRNAHGYGFTDLALNDLLSQ CIFNPKTNQLVRLD IKNQFQK PLLFSADLGADL +
Sbjct: 61 SPLRNAHGYGFTDLALNDLLSQLCIFNPKTNQLVRLDYIKNQFQKTPLLFSADLGADLVS 120
Query: 121 NTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQ 180
N ELQ+ILLE FEQCIITDHHKSFEVDWID+NKIAYINLNDEKDANYYSGAFTSALVFSQ
Sbjct: 121 NIELQKILLERFEQCIITDHHKSFEVDWIDKNKIAYINLNDEKDANYYSGAFTSALVFSQ 180
Query: 181 IFQTQTTPLEEELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDD 240
IFQ QTTPLEEELIAITLLSDRIDLD+GDNLDMVL+LAQ KH+RI+CFFKDKDLSLAQDD
Sbjct: 181 IFQIQTTPLEEELIAITLLSDRIDLDNGDNLDMVLNLAQPKHDRIECFFKDKDLSLAQDD 240
Query: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEF 300
LDEISNLYGFNCINYINALSRLSGAREFKGCY+SYLHYLVLKHFNPI+DPRLSVFNVKEF
Sbjct: 241 LDEISNLYGFNCINYINALSRLSGAREFKGCYNSYLHYLVLKHFNPISDPRLSVFNVKEF 300
Query: 301 KRYNDIKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLC 360
KRYNDIKKKMVKESEENAQIF CNKILVA+LDESCS KVGVSGLVANNFLKKYP N SLC
Sbjct: 301 KRYNDIKKKMVKESEENAQIFSCNKILVAILDESCSIKVGVSGLVANNFLKKYPFNHSLC 360
Query: 361 IYRDNKDGYSGSARGGGNFLSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIK 412
IY+D+KDGYSGSARG G FLSQIKTIPLIQAGGHEEAFGLSFAK K+++K
Sbjct: 361 IYKDSKDGYSGSARGDGTFLSQIKTIPLIQAGGHEEAFGLSFAK---KRILK 409
>ref|NP_603278.1| (NC_003454) Single-stranded-DNA-specific exonuclease recJ
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94577.1| (AE010548) Single-stranded-DNA-specific exonuclease recJ
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 844
Score = 53.9 bits (128), Expect = 3e-06
Identities = 100/426 (23%), Positives = 177/426 (41%), Gaps = 77/426 (18%)
Query: 7 LKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNA 66
+ ++ +RIF+ K ++ I Y D D DG+ + S+L LG + ++ PLR+
Sbjct: 56 MDIATQRIFEAI----KNNQKIYIYGDYDVDGITSVSLLYLAFSELG-ANVNYYIPLRD- 109
Query: 67 HGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAANTELQE 126
GYG A+ L N + ++ +DC N ++ + F+ +L D
Sbjct: 110 EGYGLNKEAIQILK------NENADLVISVDCGINSIEE--INFANELNLDF-------- 153
Query: 127 ILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDA---NYYSGAFTSALVFSQIFQ 183
IITDHH E+ +A IN E++ Y +G T+ ++ ++
Sbjct: 154 ---------IITDHH---EITGGIPKALAVINPKREENIYSFKYLAGVGTAFMLIYALY- 200
Query: 184 TQTTPLEE-----ELIAITLLSDRIDLDHGDNLDMVL----SLAQAKHERIKCFFKDKDL 234
TQ L + +++AI ++D + L DN V +L K IK + K
Sbjct: 201 TQMNKLNDLEKYLDIVAIGTVADIVPL-VSDNRKFVKKGLETLKNTKWIGIKQLLR-KIF 258
Query: 235 SLAQDDLDEISNLYGFNCINYINALSRLSGAREFKGCY---DSYLHYLVLKHFNPINDPR 291
D + + G+ NA RL A++ + D + ++ N R
Sbjct: 259 PDNWDTKEYFAYDIGYIIAPIFNAAGRLEDAKQAVSLFVEEDGFKCLSIIDKLLENNTER 318
Query: 292 LSVFNVKEFKRYNDIKKKMVKES---EENAQIFPCNKILVALLDESCSTKVGVSGLVANN 348
DI+KK+++ S E Q++ N ILVA + + GV G+VA+
Sbjct: 319 ------------KDIQKKILEMSIAEIEKKQLYNKNLILVA----NKAFHHGVIGIVASK 362
Query: 349 FLKKYPSNRSLCIYRDNKDGYSGSARGGGNF-----LSQIKTIPLIQAGGHEEAFGLSFA 403
L KY + ++++ + S R G+ L+ + I L++ GGH A G +
Sbjct: 363 ILDKYYKPTIIMEIKESEGVATASCRSIGDLNIVECLNSVSDI-LVKYGGHSGAAGFTIK 421
Query: 404 KEDFKK 409
E+ ++
Sbjct: 422 IENIEE 427
>ref|NP_465050.1| (NC_003210) similar to single-stranded-DNA-specific exonuclease
(RecJ) [Listeria monocytogenes EGD-e]
emb|CAC99603.1| (AL591979) similar to single-stranded-DNA-specific exonuclease
(RecJ) [Listeria monocytogenes]
Length = 783
Score = 50.8 bits (120), Expect = 3e-05
Identities = 99/415 (23%), Positives = 162/415 (38%), Gaps = 70/415 (16%)
Query: 19 LKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLALN 77
+K+A +++ I+ Y D D DG+ + +VLM LG D F+ P R GYG
Sbjct: 73 IKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLG-ADADFYIPNRFTEGYG------- 124
Query: 78 DLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLG-ADLAANTELQEILLEHFEQCI 136
+ D KN Q L+ + D G A L +EI L+ I
Sbjct: 125 -------------PNIAAFDMAKN--QGTDLIITVDNGIAALEVMAHAKEIGLD----VI 165
Query: 137 ITDHHKSFEVDWIDENKIAYINLNDEKDANYYS--GAFTSALVFSQIFQTQTTPLEEELI 194
+TDHH+ E I +A I+ K A + A S + +L+
Sbjct: 166 VTDHHEPRE---IMPEAVAVIHPKHPKSAYPFDELAGVGVAYKLSHALLGEEPKELLDLV 222
Query: 195 AITLLSDRIDLDHGDNLDMVLSLAQAKHE-RIKCFFKDKDLSLAQDDLDEISNLYGFNCI 253
A+ ++D + L + L + L L Q + + K SL ++ E GF
Sbjct: 223 AVGTVADLVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATE--ETIGFGLA 280
Query: 254 NYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEFKRYNDIKKKMVKE 313
+NA+ RL A D L+ + DP ++F +E N +K++V +
Sbjct: 281 PRLNAVGRLGPA-------DPAADLLLTE------DPEEALFLAEEIDDANKERKQIVVD 327
Query: 314 SEENAQ--IFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLCIYRDNKDGYSG 371
+ + A I + + L+ G+ G+VA+ + Y S ++ + D +G
Sbjct: 328 TTKLAMEAIEAKDTLGNVLVVYGEGWNTGILGIVASKLVGTY-SRPAIVL---GIDPVTG 383
Query: 372 SARGGGNFLSQIKTIPLIQA-----------GGHEEAFGLSFAKEDFKKVIKSLQ 415
A+G G + L QA GGH A GL+ E+ ++ LQ
Sbjct: 384 IAKGSGR---SVDAFHLYQALDKHRDLMMAFGGHPMAAGLTLPAENLTELEAKLQ 435
>ref|NP_470896.1| (NC_003212) similar to single-stranded-DNA-specific exonuclease
(RecJ) [Listeria innocua]
emb|CAC96791.1| (AL596169) similar to single-stranded-DNA-specific exonuclease
(RecJ) [Listeria innocua]
Length = 783
Score = 50.4 bits (119), Expect = 4e-05
Identities = 99/407 (24%), Positives = 159/407 (38%), Gaps = 73/407 (17%)
Query: 28 IVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLALNDLLSQPCIFN 87
I+ Y D D DG+ + +VLM LG F+ P R GYG
Sbjct: 83 ILVYGDYDADGVTSIAVLMKTLRHLGANAEFYI-PNRFTEGYG----------------- 124
Query: 88 PKTNQLVRLDCIKNQFQKNPLLFSADLG-ADLAANTELQEILLEHFEQCIITDHHKSFEV 146
+ D KN Q L+ + D G A L T +EI L+ I+TDHH+ EV
Sbjct: 125 ---PNIAAFDMAKN--QGVDLIITVDNGIAALEVMTHAKEIGLD----VIVTDHHEPREV 175
Query: 147 DWIDENKIAYINLNDEKDANYYS--GAFTSALVFSQIFQTQTTPLEEELIAITLLSDRID 204
+ IA I+ K A + A S + +L+A+ ++D +
Sbjct: 176 ---MPDAIAVIHPKHPKSAYPFDELAGVGVAYKLSHALLGEEPKELLDLVAVGTVADLVS 232
Query: 205 LDHGDNLDMVLSLAQAK-HERIKCFFKDKDLSLAQDDLDEISNLYGFNCINYINALSRLS 263
L + L + L L Q + + + K SL ++ E GF +NA+ RL
Sbjct: 233 LTDENRLLVQLGLRQLRENANLGLAVLAKKASLKLEEATE--ETIGFGLAPRLNAVGRLG 290
Query: 264 GAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEFKRYNDIKKKMVKESEENAQIFPC 323
A D L+ + DP ++F +E N +K++V + + A
Sbjct: 291 PA-------DPAADLLLTE------DPEEALFLAEEIDDANKERKQVVVDVTKLAMAAIE 337
Query: 324 NK----ILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLCIYRDNKDGYSGSARGGGNF 379
K ++ + E +T G+ G+VA+ + Y S ++ + D +G A+G G
Sbjct: 338 AKESLGNIIVVSGEGWNT--GILGIVASKLVSVY-SRPAIVL---GIDPVTGVAKGSGR- 390
Query: 380 LSQIKTIPLIQA-----------GGHEEAFGLSFAKEDFKKVIKSLQ 415
++ L QA GGH A GL+ E+ ++ LQ
Sbjct: 391 --SVEAFHLYQALDKHRSLMTAFGGHPMAAGLTLPAENLAELDNKLQ 435
>ref|NP_266788.1| (NC_002662) single-stranded DNA specific exonuclease [Lactococcus
lactis subsp. lactis]
gb|AAK04730.1|AE006296_4 (AE006296) single-stranded DNA specific exonuclease [Lactococcus
lactis subsp. lactis]
Length = 742
Score = 43.9 bits (102), Expect = 0.004
Identities = 99/420 (23%), Positives = 162/420 (38%), Gaps = 88/420 (20%)
Query: 19 LKEAKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLALND 78
L +Q I+ Y D D DGM A SV+ S LG + + P R GYG
Sbjct: 75 LSAIEQGENILIYGDYDADGMTASSVMKSALDELGAEAQVYL-PNRFTDGYG-------- 125
Query: 79 LLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLG-ADLAANTELQEILLEHFEQCII 137
N V IKN + L+ + D G A L A T Q E+ I+
Sbjct: 126 -----------PNLDVYQYYIKN--ENINLIITVDNGVAGLEAITWAQ----ENGVDVIV 168
Query: 138 TDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQIFQTQTTPLEE------ 191
TDHH D+ AY ++ E + Y + + + F+ LE
Sbjct: 169 TDHHSI-----PDQLPPAYAIVHPEHPDSQYPFKYLAGV--GVAFKVACALLEYAPSEML 221
Query: 192 ELIAITLLSDRIDLDHGDNLDM---VLSLAQAKHERIKCFFKDKDLSLAQDDLDEIS-NL 247
+L+AI ++D + L + + + + LAQ + ++ K A D D+I+
Sbjct: 222 DLVAIGTIADMVSLTDENRILVAHGLKVLAQTERAGLQELMK-----YAGVDFDKITEET 276
Query: 248 YGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEFKRYNDIK 307
GF +NAL RL +P + + + ++I
Sbjct: 277 VGFQIAPRLNALGRLDDP-----------------------NPAIELLTGWDEDEAHEIA 313
Query: 308 KKMVKESEENAQIFP--CNKILVALLDESCST------KVGVSGLVANNFLKKYPSNRSL 359
K + +++ E +I N+ L L DE GV G+VA L+ ++ +
Sbjct: 314 KMIDQKNSERKEIVEKIHNEALSMLTDEPVQILYHKDWHKGVLGIVAGRLLEAI--HKPV 371
Query: 360 CIYRDNKDGYSGSARGGGNF-----LSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSL 414
+ GSAR NF L+ + + I GGH++A G++ + E+ + V K++
Sbjct: 372 IMLAQEDGILRGSARSIENFDIFKALNAHREL-FIAFGGHKQAAGMTLSLENVEAVKKAM 430
>ref|NP_602809.1| (NC_003454) Single-stranded-DNA-specific exonuclease recJ
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94108.1| (AE010504) Single-stranded-DNA-specific exonuclease recJ
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 556
Score = 43.5 bits (101), Expect = 0.005
Identities = 94/407 (23%), Positives = 171/407 (41%), Gaps = 63/407 (15%)
Query: 22 AKQHRPIVF-YTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLALNDLL 80
A++++ +F Y D D DG+ + L +GI + P R YG + +++
Sbjct: 58 ARENKEKIFIYGDYDVDGISGTAFLTKFFNEIGISADCYI-PSRKETDYGVSKKSID--- 113
Query: 81 SQPCIFNPKTNQLV-RLDCIKNQFQKNPLLFSADLGADLAANTELQEILLEHFEQCIITD 139
F+ + +LV +D N + + ++ DLG ++ I+TD
Sbjct: 114 ----YFHKRHGKLVITVDTGYNTIED--VRYAKDLGIEV-----------------IVTD 150
Query: 140 HHKSFEVDWIDENKIAYIN--LNDEKDANYYSGAFTSALVFSQIFQTQTTPLE-----EE 192
HHK+ + + DE I Y+N L+ Y SGA + + I + +E +
Sbjct: 151 HHKTVKEKFDDE--ILYLNPKLSKNYKFQYLSGAGVAFKLAQGICMSLDLDMEIIYKYLD 208
Query: 193 LIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIK-CFFKDKDLSLAQDDLDEISNLYGFN 251
++ I ++D + + + L + L K+ +IK + L L + L Y +
Sbjct: 209 IVMIGTIADVVPMIDENRLIIKKGLKIIKNTKIKGLSYLLNYLRLNKKTLTTTDVSYYIS 268
Query: 252 CINYINALSRLSGAR---EFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEFKRYNDIKK 308
+ IN+L R+ +R +F D + Y +++ N R ++ E ++D +
Sbjct: 269 PL--INSLGRVGISRMGADFFLKDDDFDLYNIIEEMKEQNKQRRAL----EKNIFDDAMR 322
Query: 309 KMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLCIYRDNKDG 368
K+ +N +I P +K+ V L S GV G+V++ K+ N + + D
Sbjct: 323 KI-----KNLKI-PLDKLSVIFL-SSPKWHPGVIGVVSSRLAIKF--NIPVVLVAIEGDY 373
Query: 369 YSGSARGGG-----NFLSQIKTIPLIQAGGHEEAFGLSFAKEDFKKV 410
S R G N LS ++ L + GGH+ A G KE+ KV
Sbjct: 374 GKASCRSVGDISIFNLLSDVRNF-LERYGGHDLAAGFVIHKENINKV 419
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.139 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,650,675
Number of Sequences: 1026957
Number of extensions: 11489674
Number of successful extensions: 23932
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23925
Number of HSP's gapped (non-prelim): 9
length of query: 417
length of database: 324,149,939
effective HSP length: 124
effective length of query: 293
effective length of database: 196,807,271
effective search space: 57664530403
effective search space used: 57664530403
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 99 (42.7 bits)