BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645055|ref|NP_207225.1| hypothetical protein
[Helicobacter pylori 26695]
(111 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207225.1| (NC_000915) hypothetical protein [Helicoba... 223 4e-58
ref|NP_224018.1| (NC_000921) putative [Helicobacter pylori ... 89 1e-17
ref|NP_223669.1| (NC_000921) putative [Helicobacter pylori ... 56 7e-08
sp|P14181|LIA2_HAEIN LicA protein >gi|97167|pir||A33465 lic... 47 3e-05
gb|AAA24975.1| (M37912) licA product [Haemophilus influenzae] 43 6e-04
gb|AAC62824.1| (U94833) Lob1 [Haemophilus somnus] 43 8e-04
gb|AAA24977.1| (M37914) lic3 product [Haemophilus influenzae] 42 0.001
ref|NP_438870.1| (NC_000907) hemoglobin-binding protein [Ha... 42 0.001
gb|AAK76426.1|AF385404_1 (AF385404) Las [Haemophilus aegypt... 42 0.001
pir||S15287 hypothetical protein (galE 5' region) - Haemoph... 42 0.002
gb|AAB46794.1| heme-repressible hemoglobin-binding protein,... 41 0.003
sp|Q9ZA21|HGPA_HAEIN Hemoglobin and hemoglobin-haptoglobin ... 41 0.003
ref|XP_139305.1| (XM_139305) hypothetical protein XP_139305... 41 0.003
ref|NP_220093.1| (NC_000117) hypothetical protein [Chlamydi... 40 0.006
>ref|NP_207225.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
ref|NP_208199.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64573 hypothetical protein HP0427/HP1408 - Helicobacter pylori (strain
26695)
gb|AAD07496.1| (AE000558) H. pylori predicted coding region HP0427 [Helicobacter
pylori 26695]
gb|AAD08451.1| (AE000641) H. pylori predicted coding region HP1408 [Helicobacter
pylori 26695]
Length = 111
Score = 223 bits (567), Expect = 4e-58
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MSSFFQKRGRNGIQPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSS 60
MSSFFQKRGRNGIQPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSS
Sbjct: 1 MSSFFQKRGRNGIQPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSS 60
Query: 61 NQAIKQRYHTFITFTKIRLKIPYFLLFPLLFLFSFPLSLTHTAIFLKNLIR 111
NQAIKQRYHTFITFTKIRLKIPYFLLFPLLFLFSFPLSLTHTAIFLKNLIR
Sbjct: 61 NQAIKQRYHTFITFTKIRLKIPYFLLFPLLFLFSFPLSLTHTAIFLKNLIR 111
>ref|NP_224018.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71824 hypothetical protein jhp1300 - Helicobacter pylori (strain J99)
gb|AAD06878.1| (AE001553) putative [Helicobacter pylori J99]
Length = 178
Score = 88.6 bits (218), Expect = 1e-17
Identities = 57/101 (56%), Positives = 60/101 (58%), Gaps = 11/101 (10%)
Query: 13 IQPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFI 72
IQPFNHSTIQP NH IQSFNH II QS N +I QS N +I Q KQRY FI
Sbjct: 4 IQPFNHSTIQPFNHSTIQSFNHSII----QSFNHSIIQSFNHSI----IQPFKQRYLIFI 55
Query: 73 T---FTKIRLKIPYFLLFPLLFLFSFPLSLTHTAIFLKNLI 110
T FTK LKIPYFLLFPLL L LT L L+
Sbjct: 56 TIYLFTKTYLKIPYFLLFPLLLTLLLTLLLTLLLTLLLTLL 96
>ref|NP_223669.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71866 hypothetical protein jhp0952 - Helicobacter pylori (strain J99)
gb|AAD06542.1| (AE001525) putative [Helicobacter pylori J99]
Length = 63
Score = 56.2 bits (134), Expect = 7e-08
Identities = 36/67 (53%), Positives = 41/67 (60%), Gaps = 12/67 (17%)
Query: 13 IQPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFI 72
IQPFNHSTIQP NH IQ FNH IIQ+ + +I QS NQ+ I+QRY FI
Sbjct: 4 IQPFNHSTIQPFNHSTIQPFNHSIIQSF--IIHHSIIQSFNQS-------TIQQRYLIFI 54
Query: 73 T---FTK 76
T FTK
Sbjct: 55 TIYLFTK 61
>sp|P14181|LIA2_HAEIN LicA protein
pir||A33465 lic-1 phase variation protein A - Haemophilus influenzae (strain
RM7004)
gb|AAA24971.1| (M27280) LicA protein [Haemophilus influenzae]
Length = 339
Score = 47.4 bits (111), Expect = 3e-05
Identities = 30/70 (42%), Positives = 38/70 (53%), Gaps = 2/70 (2%)
Query: 29 IQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFITFTKIRLKIPYFLLFP 88
+QS N I Q+I QS NQ+I QS NQ+I QS NQ+I Q + + F K K +F
Sbjct: 1 MQSINQSINQSINQSINQSINQSINQSINQSINQSINQSINQIVGFVKTCYKPEE--VFH 58
Query: 89 LLFLFSFPLS 98
L S P S
Sbjct: 59 FLHQHSIPFS 68
Score = 43.1 bits (100), Expect = 6e-04
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 21 IQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAI 64
+Q N I QS N I Q+I QS NQ+I QS NQ+I QS NQ +
Sbjct: 1 MQSINQSINQSINQSINQSINQSINQSINQSINQSINQSINQIV 44
Score = 43.1 bits (100), Expect = 6e-04
Identities = 23/39 (58%), Positives = 27/39 (68%)
Query: 28 IIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQ 66
I QS N I Q+I QS NQ+I QS NQ+I QS NQ+I Q
Sbjct: 4 INQSINQSINQSINQSINQSINQSINQSINQSINQSINQ 42
>gb|AAA24975.1| (M37912) licA product [Haemophilus influenzae]
Length = 49
Score = 43.1 bits (100), Expect = 6e-04
Identities = 22/38 (57%), Positives = 27/38 (70%)
Query: 29 IQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQ 66
+QS N I Q+I QS NQ+I QS NQ+I QS NQ+I Q
Sbjct: 1 MQSINQSINQSINQSINQSINQSINQSINQSINQSINQ 38
Score = 41.2 bits (95), Expect = 0.002
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 36 IIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFITFTK 76
I Q+I QS NQ+I QS NQ+I QS NQ+I Q + + F K
Sbjct: 4 INQSINQSINQSINQSINQSINQSINQSINQSINQIVGFVK 44
Score = 40.0 bits (92), Expect = 0.005
Identities = 21/37 (56%), Positives = 25/37 (66%)
Query: 28 IIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAI 64
I QS N I Q+I QS NQ+I QS NQ+I QS NQ +
Sbjct: 4 INQSINQSINQSINQSINQSINQSINQSINQSINQIV 40
>gb|AAC62824.1| (U94833) Lob1 [Haemophilus somnus]
Length = 287
Score = 42.7 bits (99), Expect = 8e-04
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 25 NHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAI 64
N I QS N I Q+I QS NQ+I QS NQ+I QS NQ++
Sbjct: 2 NQSINQSINQSINQSINQSINQSINQSINQSINQSINQSV 41
Score = 42.7 bits (99), Expect = 8e-04
Identities = 22/37 (59%), Positives = 26/37 (69%)
Query: 30 QSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQ 66
QS N I Q+I QS NQ+I QS NQ+I QS NQ+I Q
Sbjct: 3 QSINQSINQSINQSINQSINQSINQSINQSINQSINQ 39
Score = 40.8 bits (94), Expect = 0.003
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 33 NHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFITF 74
N I Q+I QS NQ+I QS NQ+I QS NQ+I Q + + F
Sbjct: 2 NQSINQSINQSINQSINQSINQSINQSINQSINQSINQSVIF 43
>gb|AAA24977.1| (M37914) lic3 product [Haemophilus influenzae]
Length = 50
Score = 42.4 bits (98), Expect = 0.001
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 25 NHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAI 64
N I QS N I Q+I QS NQ+I QS NQ+I QS NQ++
Sbjct: 2 NGTICQSINQSINQSINQSINQSINQSINQSINQSINQSL 41
Score = 40.0 bits (92), Expect = 0.005
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 33 NHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFITFTKI 77
N I Q+I QS NQ+I QS NQ+I QS NQ+I Q + ++ ++
Sbjct: 2 NGTICQSINQSINQSINQSINQSINQSINQSINQSINQSLSLLQV 46
>ref|NP_438870.1| (NC_000907) hemoglobin-binding protein [Haemophilus influenzae
Rd]
sp|P44836|HGP3_HAEIN Probable hemoglobin and hemoglobin-haptoglobin binding protein 3
precursor
pir||B64088 hemoglobin-binding protein homolog HI0712 - Haemophilus
influenzae (strain Rd KW20)
gb|AAC22369.1| (U32754) hemoglobin-binding protein [Haemophilus influenzae Rd]
Length = 1084
Score = 42.0 bits (97), Expect = 0.001
Identities = 21/48 (43%), Positives = 25/48 (51%)
Query: 14 QPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSN 61
QP N T QP+N P Q N P Q Q +NQ Q +NQ Q+SN
Sbjct: 30 QPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQNSN 77
Score = 42.0 bits (97), Expect = 0.001
Identities = 21/49 (42%), Positives = 25/49 (50%)
Query: 14 QPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQ 62
QP N T QP+N P Q N P Q Q +NQ Q +NQ Q +NQ
Sbjct: 26 QPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQ 74
>gb|AAK76426.1|AF385404_1 (AF385404) Las [Haemophilus aegyptius]
Length = 703
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 38 QAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFITFTKIRLKIPY 83
QA KQ+S QA KQ+S QA KQ+S QA KQ++ + L IPY
Sbjct: 14 QASKQASKQASKQASKQASKQASKQASKQKFSLIYSLLIAFLFIPY 59
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/55 (45%), Positives = 32/55 (57%), Gaps = 7/55 (12%)
Query: 38 QAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFITFTKIRLKIPYFLLFPLLFL 92
QA KQ+S QA KQ+S QA KQ+S QA KQ +K + + Y LL LF+
Sbjct: 10 QASKQASKQASKQASKQASKQASKQASKQA-------SKQKFSLIYSLLIAFLFI 57
>pir||S15287 hypothetical protein (galE 5' region) - Haemophilus influenzae
emb|CAA40567.1| (X57315) ORF1 [Haemophilus influenzae]
Length = 281
Score = 41.6 bits (96), Expect = 0.002
Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 33 NHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFITFTKIRLK-IPYFLL 86
N I Q+I QS NQ+I QS NQ+I QS NQ+I Q I LK I Y LL
Sbjct: 2 NGTICQSINQSINQSINQSINQSINQSINQSINQSKSVIIAGNGTSLKSIDYSLL 56
>gb|AAB46794.1| heme-repressible hemoglobin-binding protein, Hgb=120 kda outer
membrane protein {N-terminal and C-terminal}
[Haemophilus influenzae, type b, strain HI689, Peptide
Partial, 145 aa, segment 1 of 2]
Length = 145
Score = 40.8 bits (94), Expect = 0.003
Identities = 20/48 (41%), Positives = 25/48 (51%)
Query: 14 QPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSN 61
+P N T QP+N P Q N P Q Q +NQ Q +NQ Q+SN
Sbjct: 25 EPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQNSN 72
>sp|Q9ZA21|HGPA_HAEIN Hemoglobin and hemoglobin-haptoglobin binding protein A precursor
(Heme-repressible hemoglobin-binding protein) (Hgb)
gb|AAD10835.1| (U51922) hemoglobin and hemoglobin-haptoglobin binding protein
[Haemophilus influenzae]
Length = 1077
Score = 40.8 bits (94), Expect = 0.003
Identities = 20/48 (41%), Positives = 25/48 (51%)
Query: 14 QPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSN 61
+P N T QP+N P Q N P Q Q +NQ Q +NQ Q+SN
Sbjct: 25 EPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQNSN 72
>ref|XP_139305.1| (XM_139305) hypothetical protein XP_139305 [Mus musculus]
Length = 177
Score = 40.8 bits (94), Expect = 0.003
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 6 QKRGRNGIQPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQ-----AIKQSSNQAIKQSS 60
Q IQP++H+ IQP +H IQ +++ +IQ ++ Q AI+ S A + S
Sbjct: 28 QPYSHTAIQPYSHTAIQPYSHTAIQPYSYTVIQLYSHTATQLYSHTAIQSYSYTATQPHS 87
Query: 61 NQAIKQRYHT 70
+ A + HT
Sbjct: 88 HTATQPHSHT 97
Score = 40.8 bits (94), Expect = 0.003
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 6 QKRGRNGIQPFNHSTIQPSNHPIIQSFNHPIIQ-----AIKQSSNQAIKQSSNQAIKQSS 60
Q IQP++H+ IQP +H IQ ++H IQ I+ S+ A + S+ AI+ S
Sbjct: 20 QPYSHTAIQPYSHTAIQPYSHTAIQPYSHTAIQPYSYTVIQLYSHTATQLYSHTAIQSYS 79
Query: 61 NQAIKQRYHT 70
A + HT
Sbjct: 80 YTATQPHSHT 89
Score = 39.7 bits (91), Expect = 0.006
Identities = 24/69 (34%), Positives = 37/69 (52%), Gaps = 5/69 (7%)
Query: 9 GRNGIQPFNHSTIQPSNHPIIQSFNHPIIQ-----AIKQSSNQAIKQSSNQAIKQSSNQA 63
G +P++H+ IQP +H IQ ++H IQ AI+ S+ AI+ S I+ S+ A
Sbjct: 7 GEENEKPYSHTAIQPYSHTAIQPYSHTAIQPYSHTAIQPYSHTAIQPYSYTVIQLYSHTA 66
Query: 64 IKQRYHTFI 72
+ HT I
Sbjct: 67 TQLYSHTAI 75
>ref|NP_220093.1| (NC_000117) hypothetical protein [Chlamydia trachomatis]
pir||D71497 hypothetical protein CT578 - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC68180.1| (AE001328) hypothetical protein [Chlamydia trachomatis]
Length = 487
Score = 39.7 bits (91), Expect = 0.006
Identities = 21/49 (42%), Positives = 28/49 (56%)
Query: 22 QPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHT 70
Q + ++Q IIQA+KQ+ QAIKQ Q IKQ+ QA+K T
Sbjct: 308 QVTMQAVVQVVKQAIIQAVKQAIVQAIKQGIKQGIKQAIKQAVKAAVKT 356
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.327 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,728,150
Number of Sequences: 1026957
Number of extensions: 1961572
Number of successful extensions: 11165
Number of sequences better than 1.0e-02: 14
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11030
Number of HSP's gapped (non-prelim): 54
length of query: 111
length of database: 324,149,939
effective HSP length: 87
effective length of query: 24
effective length of database: 234,804,680
effective search space: 5635312320
effective search space used: 5635312320
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 90 (39.3 bits)