BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645062|ref|NP_207232.1| hypothetical protein
[Helicobacter pylori 26695]
         (389 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207232.1|  (NC_000915) hypothetical protein [Helicoba...   768  0.0
ref|NP_472958.1|  (NC_000910) hypothetical protein [Plasmodi...    47  4e-04

>ref|NP_207232.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64574 hypothetical protein HP0434 - Helicobacter pylori (strain 26695)
 gb|AAD07505.1| (AE000559) H. pylori predicted coding region HP0434 [Helicobacter
           pylori 26695]
          Length = 389

 Score =  768 bits (1983), Expect = 0.0
 Identities = 389/389 (100%), Positives = 389/389 (100%)

Query: 1   MLSFIKEDSIIKAYNLNTAKLEPKDREKLGLLKIEKNKIYFHLDEKRYLKLEIIGKTKEK 60
           MLSFIKEDSIIKAYNLNTAKLEPKDREKLGLLKIEKNKIYFHLDEKRYLKLEIIGKTKEK
Sbjct: 1   MLSFIKEDSIIKAYNLNTAKLEPKDREKLGLLKIEKNKIYFHLDEKRYLKLEIIGKTKEK 60

Query: 61  EIKNAFCSNAFLAAQVLNLNQERQVLELKCHFFKHPIKILPEPLNINFKDTIIKKLLKDM 120
           EIKNAFCSNAFLAAQVLNLNQERQVLELKCHFFKHPIKILPEPLNINFKDTIIKKLLKDM
Sbjct: 61  EIKNAFCSNAFLAAQVLNLNQERQVLELKCHFFKHPIKILPEPLNINFKDTIIKKLLKDM 120

Query: 121 GKDKKIEDFKETCILKIAGFTYFVCVLPYEYENKEDKENSEEILKEDFRLLNTKGGLSVK 180
           GKDKKIEDFKETCILKIAGFTYFVCVLPYEYENKEDKENSEEILKEDFRLLNTKGGLSVK
Sbjct: 121 GKDKKIEDFKETCILKIAGFTYFVCVLPYEYENKEDKENSEEILKEDFRLLNTKGGLSVK 180

Query: 181 RALINNRHSYEAIKLRPIKQELVPGLCLFFQGSLEFNDKTTKTMRTSLLDQIQQDDKSYL 240
           RALINNRHSYEAIKLRPIKQELVPGLCLFFQGSLEFNDKTTKTMRTSLLDQIQQDDKSYL
Sbjct: 181 RALINNRHSYEAIKLRPIKQELVPGLCLFFQGSLEFNDKTTKTMRTSLLDQIQQDDKSYL 240

Query: 241 KIWEKYLIKSAQKSFNEAKEVGVLEIESVSKEGGNLRIRFKPALGKNKMEILKKSQFKKG 300
           KIWEKYLIKSAQKSFNEAKEVGVLEIESVSKEGGNLRIRFKPALGKNKMEILKKSQFKKG
Sbjct: 241 KIWEKYLIKSAQKSFNEAKEVGVLEIESVSKEGGNLRIRFKPALGKNKMEILKKSQFKKG 300

Query: 301 SDLGVLEDLDPQNEENLINLISEQKKQISKNNSQSIMIEDISGDDFIIDYDLSIKEGDAF 360
           SDLGVLEDLDPQNEENLINLISEQKKQISKNNSQSIMIEDISGDDFIIDYDLSIKEGDAF
Sbjct: 301 SDLGVLEDLDPQNEENLINLISEQKKQISKNNSQSIMIEDISGDDFIIDYDLSIKEGDAF 360

Query: 361 HLNYMGDLNTLKKQYSALDKTKKGLKRQS 389
           HLNYMGDLNTLKKQYSALDKTKKGLKRQS
Sbjct: 361 HLNYMGDLNTLKKQYSALDKTKKGLKRQS 389



>ref|NP_472958.1| (NC_000910) hypothetical protein [Plasmodium falciparum]
 pir||C71622 hypothetical protein PFB0145c - malaria parasite (Plasmodium
           falciparum)
 gb|AAC71819.1| (AE001375) hypothetical protein [Plasmodium falciparum 3D7]
          Length = 1979

 Score = 47.0 bits (110), Expect = 4e-04
 Identities = 93/413 (22%), Positives = 172/413 (41%), Gaps = 45/413 (10%)

Query: 8   DSIIKAYNLNTAKLEPKDREKLGLLKIEKNKIYFHLDEKRYLKLEIIGKTKEKEIKNAFC 67
           D I K       +LE + ++ L  +    NKI  +  +   L+ E+  + K+K I N   
Sbjct: 117 DEISKNIIHKDNELENQLKDTLKSISSLSNKIVNYESKIEELEKEL-KEVKDKNIDNNDY 175

Query: 68  SNA------FLAAQVLNLNQERQVLELK-CHFFKHPIKILPEPLNINFKDTIIKKLLKD- 119
            N       F+  ++  LN++  +L+ K     K   KI  +  NI  K+     + K+ 
Sbjct: 176 ENKLKEKEDFVKQKIDMLNEKENLLQEKELDINKREKKINEKEKNIIKKEETFHNIEKEY 235

Query: 120 MGKDKKIEDFKETCILKIAGFTYFVCVLPYEY-ENKEDKEN-SEEILKEDFRLLNTKGGL 177
           + K+K+    +ET  ++I      +  L  E  E KED EN ++++L ++  L   KG +
Sbjct: 236 LEKNKE----RETISIEIIDIKKHLEKLKIEIKEKKEDLENLNKKLLSKENVLKELKGCV 291

Query: 178 SVKRALINNRHSY---EAIKLRPIKQELVPGLCLFFQGSLEFNDKTTKTMRTSLLDQIQQ 234
             K   IN+ +     +  K + ++ EL          + +  +K  +  R    ++ ++
Sbjct: 292 KEKNETINSLNDNIIEKEKKYKLLEYELEEKNKQIDLLNKQEKEKEKEKEREKEKEREKE 351

Query: 235 DDKSY-----------LKIWEKYLIKSAQKSFNEAKEVGVLEIESVSKEGGNLRIRFKPA 283
            +K Y           + I EK      ++   E +E   L +E   K+  N  ++    
Sbjct: 352 KEKEYDTLIKELKDEKISILEKVHSIKVREMDIEKREHNFLHMEDQLKDLKNSFVKNNNQ 411

Query: 284 LGKNKMEI--LKKSQFKKGSDLGVLEDLDPQNEENLINLISEQKKQI---SKNN------ 332
           L   K EI  LK    KK  +L  +E++  +    LIN ++E++KQI   +KN+      
Sbjct: 412 LKVYKCEIKNLKTELEKKEKELKDIENVSKEEINKLINQLNEKEKQILAFNKNHKEEIHG 471

Query: 333 -----SQSIMIEDISGDDFIIDYDLSIKEGDAFHLNYMGDLNTLKKQYSALDK 380
                 +S+ I  I   +     D+  KE D     Y   + ++  + S  +K
Sbjct: 472 LKEELKESVKITKIETQELQEMVDIKQKELDQLQEKYNAQIESISIELSKKEK 524



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.316    0.137    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,153,900
Number of Sequences: 1026957
Number of extensions: 10508548
Number of successful extensions: 32191
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32184
Number of HSP's gapped (non-prelim): 7
length of query: 389
length of database: 324,149,939
effective HSP length: 123
effective length of query: 266
effective length of database: 197,834,228
effective search space: 52623904648
effective search space used: 52623904648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 98 (42.4 bits)