BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645063|ref|NP_207233.1| hypothetical protein
[Helicobacter pylori 26695]
(191 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207233.1| (NC_000915) hypothetical protein [Helicoba... 377 e-104
ref|NP_199512.1| (NM_124072) prematurely terminated mRNA de... 55 4e-07
gb|AAL92018.1| (AF484122) UPF1 [Arabidopsis thaliana] 55 4e-07
ref|NP_588369.1| (NC_003421) putative dna-binding protein [... 53 2e-06
ref|NP_593080.1| (NC_003424) putative regulator of nonsense... 51 6e-06
ref|NP_594119.1| (NC_003424) DNA2-NAM7 helicase family prot... 51 6e-06
pir||S62476 hypothetical protein SPAC16C9.06c - fission yea... 51 6e-06
ref|NP_496515.1| (NM_064114) DNA binding protein [Caenorhab... 50 1e-05
ref|NP_496516.1| (NM_064115) F43G6.1b.p [Caenorhabditis ele... 50 1e-05
sp|O76512|RNT1_CAEEL Regulator of nonsense transcripts 1 (N... 49 2e-05
ref|NP_490829.1| (NM_058428) Y48G8AL.6.p [Caenorhabditis el... 49 2e-05
ref|NP_507684.1| (NM_075283) Y80D3A.2.p [Caenorhabditis ele... 49 3e-05
dbj|BAA31600.1| (AB014525) KIAA0625 protein [Homo sapiens] 49 3e-05
ref|NP_055861.1| (NM_015046) KIAA0625 protein [Homo sapiens... 49 3e-05
emb|CAD13341.1| (AL159997) bA479K20.2 (KIAA0625 protein) [H... 49 3e-05
emb|CAD28448.1| (AL713629) possible regulator of nonsense t... 49 4e-05
sp|Q9HEH1|RNT1_NEUCR Regulator of nonsense transcripts 1 ho... 48 5e-05
ref|XP_165600.1| (XM_165600) immunoglobulin mu binding prot... 48 5e-05
ref|NP_572767.1| (NM_132539) CG1559 gene product [Drosophil... 48 7e-05
gb|EAA01007.1| (AAAB01008987) ebiP4153 [Anopheles gambiae s... 48 7e-05
sp|Q9VYS3|RNT1_DROME Regulator of nonsense transcripts 1 ho... 48 7e-05
gb|AAA70430.1| (L24544) DNA helicase [Homo sapiens] 47 9e-05
ref|NP_002171.1| (NM_002180) immunoglobulin mu binding prot... 47 9e-05
pir||A47500 Ig mu chain switch region binding protein 2 - h... 47 9e-05
ref|NP_565299.1| (NM_126378) putative helicase [Arabidopsis... 47 1e-04
pir||T02699 hypothetical protein T18E12.6 - Arabidopsis tha... 47 1e-04
ref|NP_227821.1| (NC_000853) DNA helicase, putative [Thermo... 47 1e-04
ref|NP_011103.1| (NC_001137) DNA Helicase; identified as an... 47 1e-04
emb|CAC16347.1| (AJ300306) putative helicase [Arabidopsis t... 47 1e-04
sp|Q60560|SMB2_MESAU DNA-BINDING PROTEIN SMUBP-2 (IMMUNOGLO... 47 1e-04
ref|NP_113774.1| (NM_031586) immunoglobulin S mu binding pr... 47 2e-04
ref|NP_604339.1| (NC_003454) DNA helicase [Fusobacterium nu... 46 2e-04
ref|NP_586281.1| (NC_003236) INVOLVED IN mRNA DECAY CONTROL... 46 2e-04
ref|NP_012034.1| (NC_001140) DNA replication helicase; Dna2... 46 2e-04
ref|NP_613357.1| (NC_003551) Superfamily I DNA/RNA helicase... 46 2e-04
ref|NP_492670.1| (NM_060269) Y106G6D.5.p [Caenorhabditis el... 46 2e-04
ref|XP_123344.1| (XM_123344) similar to immunoglobulin S mu... 46 2e-04
ref|NP_033238.1| (NM_009212) immunoglobulin S mu binding pr... 46 2e-04
ref|NP_012908.1| (NC_001143) DNA helicase 1; Hcs1p [Sacchar... 46 3e-04
sp|Q92900|RNT1_HUMAN Regulator of nonsense transcripts 1 (N... 45 3e-04
ref|XP_125045.1| (XM_125045) similar to Regulator of nonsen... 45 3e-04
dbj|BAA19664.1| (D86988) KIAA0221 [Homo sapiens] 45 3e-04
gb|AAC51140.1| (U59323) type 1 RNA helicase pNORF1 [Homo sa... 45 3e-04
ref|NP_109605.1| (NM_030680) regulator of nonsense transcri... 45 3e-04
ref|NP_002902.2| (NM_002911) regulator of nonsense transcri... 45 3e-04
sp|Q98TR3|RNT1_FUGRU Putative regulator of nonsense transcr... 45 3e-04
ref|NP_214409.1| (NC_000918) DNA helicase [Aquifex aeolicus... 44 7e-04
ref|NP_009745.2| (NC_001134) Pachytene CHeckpoint; Pch2p [S... 44 7e-04
ref|NP_013797.1| (NC_001145) Involved in mRNA degradation; ... 44 7e-04
sp|P38126|PCH2_YEAST Pachytene checkpoint protein 2 >gi|626... 44 7e-04
ref|NP_491374.1| (NM_058973) DNA-binding protein [Caenorhab... 44 0.001
gb|AAC50771.1| (U65533) regulator of nonsense transcript st... 44 0.001
ref|NP_247068.1| (NC_000909) DNA-binding protein, probably ... 44 0.001
ref|NP_371366.1| (NC_002758) ABC transporter ATP-binding pr... 43 0.002
gb|AAF46543.1| (AE003449) CG2990 gene product [Drosophila m... 43 0.002
pir||T00740 hypothetical protein F22O13.35 - Arabidopsis th... 43 0.002
ref|NP_172361.1| (NM_100758) predicted protein [Arabidopsis... 43 0.002
ref|NP_113505.1| (NC_002753) component of a tRNA splicing c... 43 0.002
ref|NP_473096.1| (NC_000910) replication factor C, 40 kDa s... 42 0.004
pir||T00333 hypothetical protein KIAA0560 - human 42 0.004
ref|NP_173124.1| (NM_101541) hypothetical protein [Arabidop... 42 0.004
gb|AAG09081.1|AC026237_2 (AC026237) Similar to tRNA-splicin... 42 0.004
gb|AAG37987.1|AF071409_1 (AF071409) replication factor C su... 42 0.004
dbj|BAA25486.2| (AB011132) KIAA0560 protein [Homo sapiens] 42 0.004
ref|XP_029045.1| (XM_029045) KIAA0560 gene product [Homo sa... 42 0.004
ref|NP_276746.1| (NC_000916) transcriptional control factor... 42 0.005
gb|EAA13631.1| (AAAB01008978) ebiP2831 [Anopheles gambiae s... 41 0.006
gb|EAA13627.1| (AAAB01008978) agCP7606 [Anopheles gambiae s... 41 0.006
gb|EAA11585.1| (AAAB01008960) agCP5690 [Anopheles gambiae s... 41 0.006
ref|NP_596055.1| (NC_003423) tRNA-splicing endonuclease pos... 41 0.008
ref|NP_109769.1| (NC_000912) glutamine transport ATP-bindin... 41 0.008
>ref|NP_207233.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64574 hypothetical protein HP0435 - Helicobacter pylori (strain 26695)
gb|AAD07506.1| (AE000559) H. pylori predicted coding region HP0435 [Helicobacter
pylori 26695]
Length = 191
Score = 377 bits (968), Expect = e-104
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MDEVLKEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGK 60
MDEVLKEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGK
Sbjct: 1 MDEVLKEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGK 60
Query: 61 TTVINAICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIKVGGLPTFKFGAKKNAKE 120
TTVINAICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIKVGGLPTFKFGAKKNAKE
Sbjct: 61 TTVINAICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIKVGGLPTFKFGAKKNAKE 120
Query: 121 EQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILDLEEALRRYYSSPISELEF 180
EQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILDLEEALRRYYSSPISELEF
Sbjct: 121 EQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILDLEEALRRYYSSPISELEF 180
Query: 181 LKEIEKNESFF 191
LKEIEKNESFF
Sbjct: 181 LKEIEKNESFF 191
>ref|NP_199512.1| (NM_124072) prematurely terminated mRNA decay factor-like protein
[Arabidopsis thaliana]
sp|Q9FJR0|RNT1_ARATH Regulator of nonsense transcripts 1 homolog
dbj|BAB10240.1| (AB013394) prematurely terminated mRNA decay factor-like protein
[Arabidopsis thaliana]
Length = 1235
Score = 55.1 bits (131), Expect = 4e-07
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+Q A+K L P I++IQGPPGTGKT AI Y K +GQ+L+CA + A
Sbjct: 489 SQVNAVKSVLQKP-ISLIQGPPGTGKTVTSAAIV------YHMAKQGQGQVLVCAPSNVA 541
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGD 153
+ E+I GL + AK + L+ ++R +T +S KLQ+L D
Sbjct: 542 VDQLAEKISATGLKVVRLCAKSREAVSSPVEYLTLHYQVRHL-DTSEKSELHKLQQLKD 599
>gb|AAL92018.1| (AF484122) UPF1 [Arabidopsis thaliana]
Length = 1243
Score = 55.1 bits (131), Expect = 4e-07
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+Q A+K L P I++IQGPPGTGKT AI Y K +GQ+L+CA + A
Sbjct: 481 SQVNAVKSVLQKP-ISLIQGPPGTGKTVTSAAIV------YHMAKQGQGQVLVCAPSNVA 533
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGD 153
+ E+I GL + AK + L+ ++R +T +S KLQ+L D
Sbjct: 534 VDQLAEKISATGLKVVRLCAKSREAVSSPVEYLTLHYQVRHL-DTSEKSELHKLQQLKD 591
>ref|NP_588369.1| (NC_003421) putative dna-binding protein [Schizosaccharomyces
pombe]
pir||T41580 probable dna-binding protein - fission yeast (Schizosaccharomyces
pombe)
emb|CAB11611.1| (Z98951) hypothetical protein [Schizosaccharomyces pombe]
emb|CAA20863.1| (AL031546) putative dna-binding protein [Schizosaccharomyces pombe]
Length = 660
Score = 53.1 bits (126), Expect = 2e-06
Identities = 27/88 (30%), Positives = 47/88 (52%), Gaps = 7/88 (7%)
Query: 26 KIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQI 85
K F + +QKKA+K ++ ++++I GPPGTGKT + I ++L +I
Sbjct: 204 KYFNKELNASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVEIIQQLVLR-------NKRI 256
Query: 86 LLCAQGHDATNNARERIKVGGLPTFKFG 113
L+C + A +N +R+ G+P + G
Sbjct: 257 LVCGASNLAVDNIVDRLSSSGIPMVRLG 284
>ref|NP_593080.1| (NC_003424) putative regulator of nonsense transcript stability
[Schizosaccharomyces pombe]
sp|Q09820|RNT1_SCHPO Regulator of nonsense transcripts 1 homolog
pir||T37779 probable regulator of nonsense transcript stability - fission yeast
(Schizosaccharomyces pombe)
emb|CAA91194.2| (Z54366) putative regulator of nonsense transcript stability
[Schizosaccharomyces pombe]
Length = 925
Score = 51.2 bits (121), Expect = 6e-06
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+Q +A++ L+ P +++IQGPPGTGKT ++ L + + +L+CA + A
Sbjct: 396 SQSEAVRAVLSKP-LSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPSNVA 454
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGDY 154
+ E+I GL + AK E L+E+++ + ++L KL
Sbjct: 455 VDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIKNYK---FNPELQRLLKLRS- 510
Query: 155 ENIEKILDLEEALRRYYSSPISEL 178
EN E + E+ LR ++ EL
Sbjct: 511 ENNELSIQDEKKLRILVAAAEKEL 534
>ref|NP_594119.1| (NC_003424) DNA2-NAM7 helicase family protein [Schizosaccharomyces
pombe]
sp|Q92355|YDHA_SCHPO Hypothetical protein C6G9.10c in chromosome I
pir||T39072 DNA2-NAM7 helicase family protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAB03612.1| (Z81317) DNA2-NAM7 helicase family protein [Schizosaccharomyces
pombe]
Length = 1687
Score = 51.2 bits (121), Expect = 6e-06
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 32/174 (18%)
Query: 21 KRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLF-------- 72
K K+ N+P Q KAI AL+ +IQGPPGTGKT I I L
Sbjct: 1122 KAAMKRYQVNEP---QAKAIMCALDNNGFTLIQGPPGTGKTKTIIGIISALLVDLSRYHI 1178
Query: 73 ---EEYPKDKNIKGQILLCAQGHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERL 129
+ K K QILLCA + A + R+K G L + G K + + E +
Sbjct: 1179 TRPNQQSKSTESKQQILLCAPSNAAVDEVLLRLKRGFL--LENGEKYIPRVVRIGNPETI 1236
Query: 130 NERLREFA-----ETLIESVRKKLQKLGD-----------YENIEKILDLEEAL 167
N +R+ + E + V + LG Y+ I+KI +LE+ +
Sbjct: 1237 NVSVRDLSLEYQTEKQLLEVNQGAIDLGSLQELTRWRDTFYDCIQKIEELEKQI 1290
>pir||S62476 hypothetical protein SPAC16C9.06c - fission yeast
(Schizosaccharomyces pombe)
Length = 935
Score = 51.2 bits (121), Expect = 6e-06
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+Q +A++ L+ P +++IQGPPGTGKT ++ L + + +L+CA + A
Sbjct: 406 SQSEAVRAVLSKP-LSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPSNVA 464
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGDY 154
+ E+I GL + AK E L+E+++ + ++L KL
Sbjct: 465 VDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIKNYK---FNPELQRLLKLRS- 520
Query: 155 ENIEKILDLEEALRRYYSSPISEL 178
EN E + E+ LR ++ EL
Sbjct: 521 ENNELSIQDEKKLRILVAAAEKEL 544
>ref|NP_496515.1| (NM_064114) DNA binding protein [Caenorhabditis elegans]
pir||T22132 hypothetical protein F43G6.1a - Caenorhabditis elegans
emb|CAA90399.1| (Z50070) similar to DNA binding protein~cDNA EST EMBL:Z14942 comes
from this gene~cDNA EST yk46a12.3 comes from this
gene~cDNA EST yk27h9.5 comes from this gene~cDNA EST
yk46a12.5 comes from this gene~cDNA EST yk130a10.3 comes
from this gene~cDNA EST y>
Length = 1105
Score = 50.4 bits (119), Expect = 1e-05
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 19 LTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKD 78
LT ++K I K Q+KA+ AL T D +++G PG+GKTT+I+ + + L K
Sbjct: 673 LTPAIKKIIIKAKLNNEQRKAVVHALATEDFMMVEGLPGSGKTTLISVLIQCLVATNKK- 731
Query: 79 KNIKGQILLCAQGHDATNNARERI--KVGGLPTFKFGAKKNAKEEQYKQDERLNERL-RE 135
+LL A H A +N ++ +V + G+ + K++ K L +L E
Sbjct: 732 ------VLLAAFTHSAVDNILTKLTKEVAAEKILRLGSSSSIKDDIKKM--TLKAKLENE 783
Query: 136 FAETLIESVRKKLQ 149
+E +VRK ++
Sbjct: 784 TSEEYYAAVRKVMK 797
>ref|NP_496516.1| (NM_064115) F43G6.1b.p [Caenorhabditis elegans]
pir||T22138 hypothetical protein F43G6.1b - Caenorhabditis elegans
emb|CAB54253.1| (Z50070) cDNA EST yk592a5.5 comes from this gene~cDNA EST
yk653b11.5 comes from this gene [Caenorhabditis elegans]
Length = 1069
Score = 50.4 bits (119), Expect = 1e-05
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 19 LTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKD 78
LT ++K I K Q+KA+ AL T D +++G PG+GKTT+I+ + + L K
Sbjct: 637 LTPAIKKIIIKAKLNNEQRKAVVHALATEDFMMVEGLPGSGKTTLISVLIQCLVATNKK- 695
Query: 79 KNIKGQILLCAQGHDATNNARERI--KVGGLPTFKFGAKKNAKEEQYKQDERLNERL-RE 135
+LL A H A +N ++ +V + G+ + K++ K L +L E
Sbjct: 696 ------VLLAAFTHSAVDNILTKLTKEVAAEKILRLGSSSSIKDDIKKM--TLKAKLENE 747
Query: 136 FAETLIESVRKKLQ 149
+E +VRK ++
Sbjct: 748 TSEEYYAAVRKVMK 761
>sp|O76512|RNT1_CAEEL Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor
1) (Up-frameshift suppressor 1 homolog)
pir||T43280 nonsense-mediated mRNA decay trans-acting factor - Caenorhabditis
elegans
gb|AAC26789.1| (AF074017) nonsense-mediated mRNA decay trans-acting factor
[Caenorhabditis elegans]
Length = 1069
Score = 49.3 bits (116), Expect = 2e-05
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+Q +A+K L P +++IQGPPGTGKT V I L ++ +G +L+C+ + A
Sbjct: 449 SQMQAVKQVLTRP-LSLIQGPPGTGKTVVSATIVYHLVQK------TEGNVLVCSPSNIA 501
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGDY 154
++ E+I GL + A+ E L +L+ +LQKL
Sbjct: 502 VDHLAEKIHKTGLKVVRLCARSREHSETTVPYLTLQHQLKVMGGA-------ELQKLIQL 554
Query: 155 ENIEKILDLEEALRRYYSSPISELEFL 181
++ L+ ++ LR + E E L
Sbjct: 555 KDEAGELEFKDDLRYMQLKRVKEHELL 581
>ref|NP_490829.1| (NM_058428) Y48G8AL.6.p [Caenorhabditis elegans]
gb|AAK29903.2| (AC025721) Hypothetical protein Y48G8AL.6 [Caenorhabditis elegans]
Length = 1069
Score = 49.3 bits (116), Expect = 2e-05
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+Q +A+K L P +++IQGPPGTGKT V I L ++ +G +L+C+ + A
Sbjct: 449 SQMQAVKQVLTRP-LSLIQGPPGTGKTVVSATIVYHLVQK------TEGNVLVCSPSNIA 501
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGDY 154
++ E+I GL + A+ E L +L+ +LQKL
Sbjct: 502 VDHLAEKIHKTGLKVVRLCARSREHSETTVPYLTLQHQLKVMGGA-------ELQKLIQL 554
Query: 155 ENIEKILDLEEALRRYYSSPISELEFL 181
++ L+ ++ LR + E E L
Sbjct: 555 KDEAGELEFKDDLRYMQLKRVKEHELL 581
>ref|NP_507684.1| (NM_075283) Y80D3A.2.p [Caenorhabditis elegans]
emb|CAB60444.1| (AL132853) cDNA EST yk10h1.5 comes from this gene~cDNA EST yk27d4.5
comes from this gene~cDNA EST yk42b2.5 comes from this
gene~cDNA EST yk49b5.5 comes from this gene~cDNA EST
yk147h7.5 comes from this gene~cDNA EST yk192e10.5 comes
from this gene~cDNA>
Length = 1212
Score = 48.9 bits (115), Expect = 3e-05
Identities = 44/154 (28%), Positives = 71/154 (45%), Gaps = 22/154 (14%)
Query: 16 ALKLTKRVRKKI--FKNDPTENQKK-------AIKIALNTPDIAIIQGPPGTGKTTVINA 66
A +T RKK+ + DP +NQ K AIK + P + ++ GPPGTGKT V
Sbjct: 407 AFGVTPLTRKKVTPYSYDPRKNQVKFTPSQVEAIKSGMQ-PGLTMVVGPPGTGKTDVAVQ 465
Query: 67 ICERLFEEYPKDKNIKGQILLCAQGHDATNNARERI---KVGGLPTFKFGAKKNA--KEE 121
I ++ +P + L+ + A N E+I V + G + A E+
Sbjct: 466 IISNIYHNWPNQRT-----LIVTHSNQALNQLFEKIIALDVDERHLLRMGHGEEALETEK 520
Query: 122 QYKQDERLNERLREFAETL--IESVRKKLQKLGD 153
+ + R+N L+E + L +E + K L+ +GD
Sbjct: 521 DFSRYGRVNYVLKERLQLLNCVEKLAKALKIVGD 554
>dbj|BAA31600.1| (AB014525) KIAA0625 protein [Homo sapiens]
Length = 791
Score = 48.9 bits (115), Expect = 3e-05
Identities = 45/189 (23%), Positives = 89/189 (46%), Gaps = 44/189 (23%)
Query: 1 MDEVLKEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIAL----NTPDIA---IIQ 53
MD K++L++ +R + + D E+QKKAI+ A ++P +A +I
Sbjct: 26 MDFCTKDLLTTTSERIIA---------YLRDFNEDQKKAIETAYAMVKHSPSVAKICLIH 76
Query: 54 GPPGTGKTTVINAICERLFEEYPK----DKNI-----KGQILLCAQGHDATNNARERI-- 102
GPPGTGK+ I + RL E + D+N + ++L+CA + A + ++I
Sbjct: 77 GPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIIL 136
Query: 103 --------------KVGGLPTFKFGAKKNAKEE--QYKQDERLNERLREFAETLIESVRK 146
G + + G +K+ E ++ D ++N R+++ + ++++ K
Sbjct: 137 EFKEKCKDKKNPLGNCGDINLVRLGPEKSINSEVLKFSLDSQVNHRMKKELPSHVQAMHK 196
Query: 147 KLQKLGDYE 155
+ + L DY+
Sbjct: 197 RKEFL-DYQ 204
>ref|NP_055861.1| (NM_015046) KIAA0625 protein [Homo sapiens]
dbj|BAA91701.1| (AK001456) unnamed protein product [Homo sapiens]
gb|AAH32600.1| (BC032600) KIAA0625 protein [Homo sapiens]
Length = 828
Score = 48.9 bits (115), Expect = 3e-05
Identities = 45/189 (23%), Positives = 89/189 (46%), Gaps = 44/189 (23%)
Query: 1 MDEVLKEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIAL----NTPDIA---IIQ 53
MD K++L++ +R + + D E+QKKAI+ A ++P +A +I
Sbjct: 63 MDFCTKDLLTTTSERIIA---------YLRDFNEDQKKAIETAYAMVKHSPSVAKICLIH 113
Query: 54 GPPGTGKTTVINAICERLFEEYPK----DKNI-----KGQILLCAQGHDATNNARERI-- 102
GPPGTGK+ I + RL E + D+N + ++L+CA + A + ++I
Sbjct: 114 GPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIIL 173
Query: 103 --------------KVGGLPTFKFGAKKNAKEE--QYKQDERLNERLREFAETLIESVRK 146
G + + G +K+ E ++ D ++N R+++ + ++++ K
Sbjct: 174 EFKEKCKDKKNPLGNCGDINLVRLGPEKSINSEVLKFSLDSQVNHRMKKELPSHVQAMHK 233
Query: 147 KLQKLGDYE 155
+ + L DY+
Sbjct: 234 RKEFL-DYQ 241
>emb|CAD13341.1| (AL159997) bA479K20.2 (KIAA0625 protein) [Homo sapiens]
Length = 915
Score = 48.9 bits (115), Expect = 3e-05
Identities = 45/189 (23%), Positives = 89/189 (46%), Gaps = 44/189 (23%)
Query: 1 MDEVLKEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIAL----NTPDIA---IIQ 53
MD K++L++ +R + + D E+QKKAI+ A ++P +A +I
Sbjct: 150 MDFCTKDLLTTTSERIIA---------YLRDFNEDQKKAIETAYAMVKHSPSVAKICLIH 200
Query: 54 GPPGTGKTTVINAICERLFEEYPK----DKNI-----KGQILLCAQGHDATNNARERI-- 102
GPPGTGK+ I + RL E + D+N + ++L+CA + A + ++I
Sbjct: 201 GPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIIL 260
Query: 103 --------------KVGGLPTFKFGAKKNAKEE--QYKQDERLNERLREFAETLIESVRK 146
G + + G +K+ E ++ D ++N R+++ + ++++ K
Sbjct: 261 EFKEKCKDKKNPLGNCGDINLVRLGPEKSINSEVLKFSLDSQVNHRMKKELPSHVQAMHK 320
Query: 147 KLQKLGDYE 155
+ + L DY+
Sbjct: 321 RKEFL-DYQ 328
>emb|CAD28448.1| (AL713629) possible regulator of nonsense transcripts [Aspergillus
fumigatus]
Length = 1060
Score = 48.5 bits (114), Expect = 4e-05
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+Q A+K L P +++IQGPPGTGKT I Y K GQ+L+CA + A
Sbjct: 410 SQINAVKSVLQRP-MSLIQGPPGTGKTVTSATII------YHLAKINGGQVLVCAPSNVA 462
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLR 134
+ ERI GL T + AK E L+E++R
Sbjct: 463 VDQLCERIHRTGLKTVRVTAKSREDVESPVGFLSLHEQVR 502
>sp|Q9HEH1|RNT1_NEUCR Regulator of nonsense transcripts 1 homolog
emb|CAC18314.1| (AL451022) probable nonsense-mediated mRNA decay protein
[Neurospora crassa]
Length = 1093
Score = 48.1 bits (113), Expect = 5e-05
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+Q AIK L+ P +++IQGPPGTGKT I Y K Q+L+CA + A
Sbjct: 459 SQIAAIKQVLSNP-LSLIQGPPGTGKTVTSATII------YHLAKMSNSQVLVCAPSNVA 511
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLR 134
+ ERI GL + AK E L+E++R
Sbjct: 512 VDQLCERIHRTGLKVVRLTAKSREDVESSVSFLALHEQVR 551
>ref|XP_165600.1| (XM_165600) immunoglobulin mu binding protein 2 [Homo sapiens]
Length = 993
Score = 48.1 bits (113), Expect = 5e-05
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+QK+A+ AL+ ++AII GPPGTGKTT + I + ++ K +L CA + A
Sbjct: 195 SQKEAVSFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLK-------VLCCAPSNIA 247
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKE--EQYKQDERLNERLREFAETLIESVRKKLQKL 151
+N ER+ + + G E +Q+ D L R + ++ +RK + ++
Sbjct: 248 VDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVL---ARSDSAQIVADIRKDIDQV 303
>ref|NP_572767.1| (NM_132539) CG1559 gene product [Drosophila melanogaster]
gb|AAL28927.1| (AY061379) LD30316p [Drosophila melanogaster]
Length = 1180
Score = 47.8 bits (112), Expect = 7e-05
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q A+K AL P +++IQGPPGTGKT I +L + + G +L+CA
Sbjct: 451 DLNRSQVYAVKHALQRP-LSLIQGPPGTGKTVTSATIVYQLVKLH------GGTVLVCAP 503
Query: 91 GHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQK 150
+ A + E+I L + AK + L+ ++R ET S KKLQ+
Sbjct: 504 SNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNM-ET--NSELKKLQQ 560
Query: 151 LGD 153
L D
Sbjct: 561 LKD 563
>gb|EAA01007.1| (AAAB01008987) ebiP4153 [Anopheles gambiae str. PEST]
Length = 1120
Score = 47.8 bits (112), Expect = 7e-05
Identities = 38/123 (30%), Positives = 57/123 (45%), Gaps = 10/123 (8%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q A++ AL P +++IQGPPGTGKT I Y + G IL+CA
Sbjct: 481 DLNRSQVYAVRHALQRP-LSLIQGPPGTGKTVTSATIV------YQLARLNSGPILVCAP 533
Query: 91 GHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQK 150
+ A + E+I L + A+ + L+ ++R A+ S KKLQ+
Sbjct: 534 SNTAVDQLTEKIHRTNLKVVRVCARSREAIDSPVSFLALHNQIRNMAQ---NSELKKLQQ 590
Query: 151 LGD 153
L D
Sbjct: 591 LKD 593
>sp|Q9VYS3|RNT1_DROME Regulator of nonsense transcripts 1 homolog
gb|AAF48115.1| (AE003487) CG1559 gene product [Drosophila melanogaster]
Length = 685
Score = 47.8 bits (112), Expect = 7e-05
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q A+K AL P +++IQGPPGTGKT I +L + + G +L+CA
Sbjct: 451 DLNRSQVYAVKHALQRP-LSLIQGPPGTGKTVTSATIVYQLVKLH------GGTVLVCAP 503
Query: 91 GHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQK 150
+ A + E+I L + AK + L+ ++R ET S KKLQ+
Sbjct: 504 SNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNM-ET--NSELKKLQQ 560
Query: 151 LGD 153
L D
Sbjct: 561 LKD 563
>gb|AAA70430.1| (L24544) DNA helicase [Homo sapiens]
Length = 993
Score = 47.4 bits (111), Expect = 9e-05
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+QK+A+ AL+ ++AII GPPGTGKTT + I + ++ K +L CA + A
Sbjct: 195 SQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLK-------VLCCAPSNIA 247
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKE--EQYKQDERLNERLREFAETLIESVRKKLQKL 151
+N ER+ + + G E +Q+ D L R + ++ +RK + ++
Sbjct: 248 VDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVL---ARSDSAQIVADIRKDIDQV 303
>ref|NP_002171.1| (NM_002180) immunoglobulin mu binding protein 2 [Homo sapiens]
sp|P38935|SMB2_HUMAN DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2)
(SMUBP-2) (Glial factor-1) (GF-1)
gb|AAA53082.1| (L14754) DNA-binding protein [Homo sapiens]
Length = 993
Score = 47.4 bits (111), Expect = 9e-05
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+QK+A+ AL+ ++AII GPPGTGKTT + I + ++ K +L CA + A
Sbjct: 195 SQKEAVSFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLK-------VLCCAPSNIA 247
Query: 95 TNNARERI 102
+N ER+
Sbjct: 248 VDNLVERL 255
>pir||A47500 Ig mu chain switch region binding protein 2 - human
Length = 993
Score = 47.4 bits (111), Expect = 9e-05
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+QK+A+ AL+ ++AII GPPGTGKTT + I + ++ K +L CA + A
Sbjct: 195 SQKEAVSFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLK-------VLCCAPSNIA 247
Query: 95 TNNARERI 102
+N ER+
Sbjct: 248 VDNLVERL 255
>ref|NP_565299.1| (NM_126378) putative helicase [Arabidopsis thaliana]
gb|AAK76494.1| (AY045820) putative helicase [Arabidopsis thaliana]
gb|AAM15033.1| (AC005313) putative helicase [Arabidopsis thaliana]
gb|AAD17447.2| (AC006284) putative helicase [Arabidopsis thaliana]
gb|AAM14300.1| (AY091361) putative helicase [Arabidopsis thaliana]
Length = 639
Score = 47.0 bits (110), Expect = 1e-04
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 28 FKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILL 87
F + ++QK AI AL++ D+ ++ GPPGTGKTT + E + +E + +IL
Sbjct: 186 FNKNLDQSQKDAITKALSSKDVFLLHGPPGTGKTT---TVVEIVLQEVKRG----SKILA 238
Query: 88 CAQGHDATNNARERI 102
CA + A +N ER+
Sbjct: 239 CAASNIAVDNIVERL 253
>pir||T02699 hypothetical protein T18E12.6 - Arabidopsis thaliana
Length = 635
Score = 47.0 bits (110), Expect = 1e-04
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 28 FKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILL 87
F + ++QK AI AL++ D+ ++ GPPGTGKTT + E + +E + +IL
Sbjct: 182 FNKNLDQSQKDAITKALSSKDVFLLHGPPGTGKTT---TVVEIVLQEVKRG----SKILA 234
Query: 88 CAQGHDATNNARERI 102
CA + A +N ER+
Sbjct: 235 CAASNIAVDNIVERL 249
>ref|NP_227821.1| (NC_000853) DNA helicase, putative [Thermotoga maritima]
pir||G72429 hypothetical protein TM0005 - Thermotoga maritima (strain MSB8)
gb|AAD35099.1|AE001689_5 (AE001689) DNA helicase, putative [Thermotoga maritima]
Length = 650
Score = 47.0 bits (110), Expect = 1e-04
Identities = 43/156 (27%), Positives = 78/156 (49%), Gaps = 26/156 (16%)
Query: 9 LSSYQKRALK--LTKRVRKKIFKNDPT-------ENQKKAIKIALNTPDIAIIQGPPGTG 59
LSS K+AL+ L KR ++ F+ + T E+Q++A+ +AL + D +I GP GTG
Sbjct: 139 LSSEGKKALEFLLGKRKPEESFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTG 198
Query: 60 KTTVINAICERLFEEYPKDKNIKG-QILLCAQGHDATNNARER-------IKVGGLPTFK 111
KT R EY + + +G +IL+ A+ + A +N ER +++G
Sbjct: 199 KT--------RTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVS 250
Query: 112 FGAKKNAKEEQYKQDERLNERLREFAETLIESVRKK 147
K++ Q + E++++ E L + ++K+
Sbjct: 251 SHLKESTLAHQIETSSEY-EKVKKMKEELAKLIKKR 285
>ref|NP_011103.1| (NC_001137) DNA Helicase; identified as an ExtraCellular Mutant;
homology exists between ECM32 and two other identified
DNA helicases, DNA2 and NAM7; Ecm32p [Saccharomyces
cerevisiae]
sp|P32644|YE06_YEAST HYPOTHETICAL 127.0 KD PROTEIN IN RAD24-BMH1 INTERGENIC REGION
pir||S30862 DNA dependent ATPase/DNA helicase B - yeast (Saccharomyces
cerevisiae)
gb|AAB64703.1| (U18922) Yer176wp [Saccharomyces cerevisiae]
Length = 1121
Score = 47.0 bits (110), Expect = 1e-04
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 24 RKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKG 83
R K + +QK A++ LN I I+QGPPGTGKT+ I I ++ E +
Sbjct: 641 RLKFSSDKLNRSQKTAVEHVLNN-SITILQGPPGTGKTSTIEEIIIQVIERFH-----AF 694
Query: 84 QILLCAQGHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNE 131
IL A + A +N E+I KE+QY D L E
Sbjct: 695 PILCVAASNIAIDNIAEKIMENRPQIKILRILSKKKEQQYSDDHPLGE 742
>emb|CAC16347.1| (AJ300306) putative helicase [Arabidopsis thaliana]
Length = 635
Score = 47.0 bits (110), Expect = 1e-04
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 28 FKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILL 87
F + ++QK AI AL++ D+ ++ GPPGTGKTT + E + +E + +IL
Sbjct: 182 FNKNLDQSQKDAITKALSSKDVFLLHGPPGTGKTT---TVVEIVLQEVKRG----SKILA 234
Query: 88 CAQGHDATNNARERI 102
CA + A +N ER+
Sbjct: 235 CAASNIAVDNIVERL 249
>sp|Q60560|SMB2_MESAU DNA-BINDING PROTEIN SMUBP-2 (IMMUNOGLOBULIN MU BINDING PROTEIN 2)
(SMUBP-2) (INSULIN II GENE ENHANCER-BINDING PROTEIN)
(RIPE3B-BINDING COMPLEX 3B2 P110 SUBUNIT) (RIP-1)
pir||T48845 insulin II gene enhancer-binding protein rip1 [validated] - golden
hamster
gb|AAB00104.1| (L15625) insulin II gene enhancer-binding protein [Mesocricetus
auratus]
Length = 989
Score = 47.0 bits (110), Expect = 1e-04
Identities = 27/68 (39%), Positives = 39/68 (56%), Gaps = 7/68 (10%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+QK+A+ AL ++AII GPPGTGKTT + I + ++ K IL CA + A
Sbjct: 194 SQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLK-------ILCCAPSNVA 246
Query: 95 TNNARERI 102
+N ER+
Sbjct: 247 VDNLVERL 254
>ref|NP_113774.1| (NM_031586) immunoglobulin S mu binding protein 2 [Rattus
norvegicus]
gb|AAG28561.1|AF199411_1 (AF199411) antifreeze-enhancer binding protein AEP [Rattus
norvegicus]
Length = 988
Score = 46.6 bits (109), Expect = 2e-04
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+QK+A+ AL ++AII GPPGTGKTT + I + ++ K +L CA + A
Sbjct: 194 SQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLK-------VLCCAPSNIA 246
Query: 95 TNNARERI 102
+N ER+
Sbjct: 247 VDNLVERL 254
>ref|NP_604339.1| (NC_003454) DNA helicase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gb|AAL95638.1| (AE010649) DNA helicase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 849
Score = 46.2 bits (108), Expect = 2e-04
Identities = 53/171 (30%), Positives = 80/171 (45%), Gaps = 24/171 (14%)
Query: 27 IFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKT-TVINAICERLFEEYPKDKNIKGQI 85
IF +Q KA++ A+ I+IIQGPPGTGKT T++N I L + K ++
Sbjct: 120 IFPFGCNNSQYKAVRNAMEK-QISIIQGPPGTGKTQTILNIIANILMQ----GKTVQ--- 171
Query: 86 LLCAQGHDATNNARERIKVG----GLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLI 141
+ + + AT N E++ G G+ KN K QD +F+ I
Sbjct: 172 -IVSNNNSATENVYEKLSSTKYNLGFIAATLGSSKNKKNFIEHQD----TNYPDFSSWKI 226
Query: 142 ESVRKKLQ-KLGDYENIEKIL-DLEE---ALRRYYSSPISELEFLKE-IEK 186
E LQ K+ + N KI+ D +E LR+ S ++E E+ + IEK
Sbjct: 227 EENPNDLQKKIAEQSNQLKIVFDKQEKLACLRQELSQLLTEKEYFNQYIEK 277
>ref|NP_586281.1| (NC_003236) INVOLVED IN mRNA DECAY CONTROL (DNA2/NAM7 HELICASE
FAMILY) [Encephalitozoon cuniculi]
emb|CAD25885.1| (AL590449) INVOLVED IN mRNA DECAY CONTROL (DNA2/NAM7 HELICASE
FAMILY) [Encephalitozoon cuniculi]
Length = 782
Score = 46.2 bits (108), Expect = 2e-04
Identities = 32/104 (30%), Positives = 51/104 (48%), Gaps = 7/104 (6%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+Q+ A++ AL + +IQGPPGTGKT V +AI L Y G++L+ A + A
Sbjct: 348 SQEVAVRAALGRK-VTLIQGPPGTGKTLVSSAIVYNLVRHY------GGKVLVVAPSNTA 400
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAE 138
+ +I GL + +++ + L+E LRE E
Sbjct: 401 VDQLTLKIHKTGLRVLRVMSRRREYGQSDVSFLSLHENLRELQE 444
>ref|NP_012034.1| (NC_001140) DNA replication helicase; Dna2p [Saccharomyces
cerevisiae]
sp|P38859|DNA2_YEAST DNA replication helicase DNA2
pir||S48904 probable purine nucleotide-binding protein YHR164c - yeast
(Saccharomyces cerevisiae)
gb|AAB68010.1| (U00027) Dna2p: DNA replication helicase [Saccharomyces cerevisiae]
Length = 1522
Score = 46.2 bits (108), Expect = 2e-04
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
NQK+AI + D A+I G PGTGKTTVI I + L E + +LL + H A
Sbjct: 1055 NQKEAIDKVMRAEDYALILGMPGTGKTTVIAEIIKILVSEGKR-------VLLTSYTHSA 1107
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKEEQYK 124
+N +++ + + G K + K
Sbjct: 1108 VDNILIKLRNTNISIMRLGMKHKVHPDTQK 1137
>ref|NP_613357.1| (NC_003551) Superfamily I DNA/RNA helicase [Methanopyrus kandleri
AV19]
gb|AAM01287.1| (AE010306) Superfamily I DNA/RNA helicase [Methanopyrus kandleri
AV19]
Length = 698
Score = 46.2 bits (108), Expect = 2e-04
Identities = 36/122 (29%), Positives = 55/122 (44%), Gaps = 21/122 (17%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q++A++ AL PD +I GPPGTGKT I E + +E + ++L A+
Sbjct: 188 DLNYSQREAVEHALGAPDFFLIHGPPGTGKT---RTITEVIVQEVRRG----NKVLATAE 240
Query: 91 GHDATNNARERIKVGGLPTFKFG----AKKNAKEEQ----------YKQDERLNERLREF 136
+ A +N E + G+ + G K KE Y++ ERL ER
Sbjct: 241 SNVAADNILEYLVERGVEAVRVGHPARVSKKLKERTLSAIVENHPLYRKAERLRERAYRL 300
Query: 137 AE 138
E
Sbjct: 301 IE 302
>ref|NP_492670.1| (NM_060269) Y106G6D.5.p [Caenorhabditis elegans]
pir||T26415 hypothetical protein Y106G6D.5 - Caenorhabditis elegans
emb|CAA20978.1| (AL031629) cDNA EST EMBL:T00167 comes from this gene~cDNA EST
yk384f3.3 comes from this gene~cDNA EST yk287a1.5 comes
from this gene~cDNA EST yk384f3.5 comes from this gene
[Caenorhabditis elegans]
Length = 693
Score = 46.2 bits (108), Expect = 2e-04
Identities = 27/67 (40%), Positives = 39/67 (57%), Gaps = 8/67 (11%)
Query: 35 NQKKAIKIALNTP-DIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHD 93
+Q A+ A+NT ++ IQGPPGTGKT VI I +L ++ K ++L+CA H
Sbjct: 242 SQVAAVSAAMNTQRNLLCIQGPPGTGKTRVIAEIVHQLMKK-------KKKVLVCAPTHV 294
Query: 94 ATNNARE 100
A NA +
Sbjct: 295 AVRNAMD 301
>ref|XP_123344.1| (XM_123344) similar to immunoglobulin S mu binding protein 2;
antifreeze enhancer-binding protein [Mus musculus]
Length = 993
Score = 46.2 bits (108), Expect = 2e-04
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+QK+A+ AL ++AII GPPGTGKTT + I + ++ K +L CA + A
Sbjct: 194 SQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGLK-------VLCCAPSNIA 246
Query: 95 TNNARERI 102
+N ER+
Sbjct: 247 VDNLVERL 254
>ref|NP_033238.1| (NM_009212) immunoglobulin S mu binding protein 2; antifreeze
enhancer-binding protein [Mus musculus]
sp|P40694|SMB2_MOUSE DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2)
(SMUBP-2) (Cardiac transcription factor 1) (CATF1)
pir||S35633 DNA-binding protein - mouse
gb|AAA40143.1| (L10075) DNA-binding protein [Mus musculus]
Length = 993
Score = 46.2 bits (108), Expect = 2e-04
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+QK+A+ AL ++AII GPPGTGKTT + I + ++ K +L CA + A
Sbjct: 194 SQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGLK-------VLCCAPSNIA 246
Query: 95 TNNARERI 102
+N ER+
Sbjct: 247 VDNLVERL 254
>ref|NP_012908.1| (NC_001143) DNA helicase 1; Hcs1p [Saccharomyces cerevisiae]
sp|P34243|YKB7_YEAST HYPOTHETICAL 78.3 KD PROTEIN IN RAM2-ATP7 INTERGENIC REGION
pir||S34700 probable purine nucleotide-binding protein YKL017c - yeast
(Saccharomyces cerevisiae)
emb|CAA52266.1| (X74152) orf4; homologous to human putative GTP-binding protein
[Saccharomyces cerevisiae]
emb|CAA81852.1| (Z28017) ORF YKL017c [Saccharomyces cerevisiae]
Length = 683
Score = 45.8 bits (107), Expect = 3e-04
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 25 KKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQ 84
K + ++QK AI A+N D+ II GPPGTGKT + + ++L + P+++
Sbjct: 201 KSFLNPNLNDSQKTAINFAINN-DLTIIHGPPGTGKTFTLIELIQQLLIKNPEER----- 254
Query: 85 ILLCAQGHDATNNARERI 102
IL+C + + + ER+
Sbjct: 255 ILICGPSNISVDTILERL 272
>sp|Q92900|RNT1_HUMAN Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor
1) (NORF1) (Up-frameshift suppressor 1 homolog)
Length = 1129
Score = 45.4 bits (106), Expect = 3e-04
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q A+K L P +++IQGPPGTGKT I Y + G +L+CA
Sbjct: 481 DLNHSQVYAVKTVLQRP-LSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAP 533
Query: 91 GHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQK 150
+ A + E+I GL + AK + L+ ++R +++ E +KLQ+
Sbjct: 534 SNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNM-DSMPE--LQKLQQ 590
Query: 151 LGD 153
L D
Sbjct: 591 LKD 593
>ref|XP_125045.1| (XM_125045) similar to Regulator of nonsense transcripts 1
(Nonsense mRNA reducing factor 1) (NORF1) (Up-frameshift
suppressor 1 homolog) [Mus musculus]
sp|Q9EPU0|RNT1_MOUSE Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor
1) (NORF1) (Up-frameshift suppressor 1 homolog)
gb|AAG42830.1|AF322655_1 (AF322655) regulator of nonsense transcripts 1 [Mus musculus]
Length = 1113
Score = 45.4 bits (106), Expect = 3e-04
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q A+K L P +++IQGPPGTGKT I Y + G +L+CA
Sbjct: 465 DLNHSQVYAVKTVLQRP-LSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAP 517
Query: 91 GHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQK 150
+ A + E+I GL + AK + L+ ++R +++ E +KLQ+
Sbjct: 518 SNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNM-DSMPE--LQKLQQ 574
Query: 151 LGD 153
L D
Sbjct: 575 LKD 577
>dbj|BAA19664.1| (D86988) KIAA0221 [Homo sapiens]
Length = 1129
Score = 45.4 bits (106), Expect = 3e-04
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q A+K L P +++IQGPPGTGKT I Y + G +L+CA
Sbjct: 481 DLNHSQVYAVKTVLQRP-LSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAP 533
Query: 91 GHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQK 150
+ A + E+I GL + AK + L+ ++R +++ E +KLQ+
Sbjct: 534 SNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNM-DSMPE--LQKLQQ 590
Query: 151 LGD 153
L D
Sbjct: 591 LKD 593
>gb|AAC51140.1| (U59323) type 1 RNA helicase pNORF1 [Homo sapiens]
Length = 1118
Score = 45.4 bits (106), Expect = 3e-04
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q A+K L P +++IQGPPGTGKT I Y + G +L+CA
Sbjct: 470 DLNHSQVYAVKTVLQRP-LSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAP 522
Query: 91 GHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQK 150
+ A + E+I GL + AK + L+ ++R +++ E +KLQ+
Sbjct: 523 SNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNM-DSMPE--LQKLQQ 579
Query: 151 LGD 153
L D
Sbjct: 580 LKD 582
>ref|NP_109605.1| (NM_030680) regulator of nonsense transcripts 1; nonsense mRNA
reducing factor 1 [Mus musculus]
gb|AAK08652.1|AF182947_1 (AF182947) nonsense mRNA reducing factor 1 NORF1 [Mus musculus]
Length = 1113
Score = 45.4 bits (106), Expect = 3e-04
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q A+K L P +++IQGPPGTGKT I Y + G +L+CA
Sbjct: 465 DLNHSQVYAVKTVLQRP-LSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAP 517
Query: 91 GHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQK 150
+ A + E+I GL + AK + L+ ++R +++ E +KLQ+
Sbjct: 518 SNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNM-DSMPE--LQKLQQ 574
Query: 151 LGD 153
L D
Sbjct: 575 LKD 577
>ref|NP_002902.2| (NM_002911) regulator of nonsense transcripts 1; up-frameshift
mutation 1 homolog (S. cerevisiae); nonsense mRNA
reducing factor 1; yeast Upf1p homolog; up-frameshift
suppressor 1 homolog (S. cerevisiae) [Homo sapiens]
gb|AAB94785.1| (AC003972) pNORF1 [Homo sapiens]
gb|AAC26788.1| (AF074016) nonsense-mediated mRNA decay trans-acting factor [Homo
sapiens]
Length = 1118
Score = 45.4 bits (106), Expect = 3e-04
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q A+K L P +++IQGPPGTGKT I Y + G +L+CA
Sbjct: 470 DLNHSQVYAVKTVLQRP-LSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAP 522
Query: 91 GHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQK 150
+ A + E+I GL + AK + L+ ++R +++ E +KLQ+
Sbjct: 523 SNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNM-DSMPE--LQKLQQ 579
Query: 151 LGD 153
L D
Sbjct: 580 LKD 582
>sp|Q98TR3|RNT1_FUGRU Putative regulator of nonsense transcripts 1
emb|CAC33025.1| (AJ301641) hypothetical protein [Takifugu rubripes]
Length = 1097
Score = 45.4 bits (106), Expect = 3e-04
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q A+K L P +++IQGPPGTGKT I Y + G +L+CA
Sbjct: 452 DLNHSQVYAVKTVLQRP-LSLIQGPPGTGKTVTSATIV------YHLSRQGNGPVLVCAP 504
Query: 91 GHDATNNARERIKVGGLPTFKFGAK 115
+ A + E+I GL + AK
Sbjct: 505 SNIAVDQLTEKIDKTGLKVVRLCAK 529
>ref|NP_214409.1| (NC_000918) DNA helicase [Aquifex aeolicus]
pir||D70476 DNA helicase - Aquifex aeolicus
gb|AAC07803.1| (AE000770) DNA helicase [Aquifex aeolicus]
Length = 530
Score = 44.3 bits (103), Expect = 7e-04
Identities = 26/67 (38%), Positives = 37/67 (54%), Gaps = 7/67 (10%)
Query: 36 QKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDAT 95
QKKA++ AL + +I GPPGTGKTT + +RL +E K +L A + A
Sbjct: 53 QKKAVERALKAEKVFLIHGPPGTGKTTTLVECIKRLAQEGYK-------VLATADSNVAV 105
Query: 96 NNARERI 102
+N ER+
Sbjct: 106 DNLVERL 112
>ref|NP_009745.2| (NC_001134) Pachytene CHeckpoint; Pch2p [Saccharomyces cerevisiae]
Length = 564
Score = 44.3 bits (103), Expect = 7e-04
Identities = 24/67 (35%), Positives = 37/67 (54%), Gaps = 7/67 (10%)
Query: 5 LKEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVI 64
+KE L SY +LK+ + FK NQ+ + N + ++ GPPGTGKTT+
Sbjct: 272 IKERLYSYATISLKIAR------FKQTGDSNQEDITTLITNNK-LLLVHGPPGTGKTTLC 324
Query: 65 NAICERL 71
A+C++L
Sbjct: 325 KALCQKL 331
>ref|NP_013797.1| (NC_001145) Involved in mRNA degradation; Nam7p [Saccharomyces
cerevisiae]
sp|P30771|NAM7_YEAST NAM7 protein ((Nuclear accomodation of mitochondria 7 protein)
Nonsense-mediated mRNA decay protein 1) (Up-frameshift
suppressor 1)
pir||S23408 prematurely terminated mRNA decay factor NAM7 - yeast
(Saccharomyces cerevisiae)
emb|CAA44266.1| (X62394) helicase [Saccharomyces cerevisiae]
gb|AAA35197.1| (M76659) zinc finger protein [Saccharomyces cerevisiae]
emb|CAA89226.1| (Z49259) Nam7p [Saccharomyces cerevisiae]
Length = 971
Score = 44.3 bits (103), Expect = 7e-04
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDA 94
+Q A+ L P +++IQGPPGTGKT I Y K K +IL+CA + A
Sbjct: 412 SQSNAVSHVLQRP-LSLIQGPPGTGKTVTSATIV------YHLSKIHKDRILVCAPSNVA 464
Query: 95 TNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGD 153
++ +++ GL + AK E + L+ + A+ ++++ K ++G+
Sbjct: 465 VDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGE 523
>sp|P38126|PCH2_YEAST Pachytene checkpoint protein 2
pir||S46058 YTA1 protein-related protein YBR186w - yeast (Saccharomyces
cerevisiae)
emb|CAA85147.1| (Z36055) ORF YBR186w [Saccharomyces cerevisiae]
gb|AAB60280.1| (U02073) unknown [Saccharomyces cerevisiae]
Length = 536
Score = 44.3 bits (103), Expect = 7e-04
Identities = 24/67 (35%), Positives = 37/67 (54%), Gaps = 7/67 (10%)
Query: 5 LKEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVI 64
+KE L SY +LK+ + FK NQ+ + N + ++ GPPGTGKTT+
Sbjct: 272 IKERLYSYATISLKIAR------FKQTGDSNQEDITTLITNNK-LLLVHGPPGTGKTTLC 324
Query: 65 NAICERL 71
A+C++L
Sbjct: 325 KALCQKL 331
>ref|NP_491374.1| (NM_058973) DNA-binding protein [Caenorhabditis elegans]
pir||T28788 hypothetical protein C41D11.7 - Caenorhabditis elegans
gb|AAC48142.1| (AF003740) Hypothetical protein C41D11.7 [Caenorhabditis elegans]
Length = 633
Score = 43.9 bits (102), Expect = 0.001
Identities = 32/102 (31%), Positives = 51/102 (49%), Gaps = 10/102 (9%)
Query: 5 LKEILSSYQKRALKLTK--RVRKKIFKNDPTENQKKAIKIALN-TPDIAIIQGPPGTGKT 61
L+++L S+ ++L + K+ E Q+ AIK+ALN + IQGPPGTGKT
Sbjct: 45 LQDVLESHMTDPIELNSFDSMEKEAGIPFSNEKQRTAIKMALNENRKLVCIQGPPGTGKT 104
Query: 62 TVINAICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIK 103
+ + RL ++ K Q+++ A +A N R K
Sbjct: 105 FTLTLLLCRLIQQ-------KKQVVVLAPTREALANIRMMTK 139
>gb|AAC50771.1| (U65533) regulator of nonsense transcript stability [Homo sapiens]
Length = 1118
Score = 43.9 bits (102), Expect = 0.001
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQ 90
D +Q A+K L P +++IQGPPGTGKT I Y + G +L+CA
Sbjct: 470 DLNHSQVYAVKTVLQRP-LSLIQGPPGTGKTVTSATIV------YHLARQDNGPVLVCAP 522
Query: 91 GHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQK 150
+ A + E+I GL + K + L+ ++R +++ E +KLQ+
Sbjct: 523 SNIAVDQLTEKIHQTGLKVVRLCPKSREAIDSPVSFLALHNQIRNM-DSMPE--LQKLQQ 579
Query: 151 LGD 153
L D
Sbjct: 580 LKD 582
>ref|NP_247068.1| (NC_000909) DNA-binding protein, probably DNA helicase
[Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
sp|Q57568|Y104_METJA Hypothetical ATP-binding protein MJ0104
pir||H64312 probable DNA helicase MJ0104 - Methanococcus jannaschii
gb|AAB98084.1| (U67467) DNA-binding protein, probably DNA helicase [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
Length = 663
Score = 43.5 bits (101), Expect = 0.001
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 19 LTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKD 78
L + ++ + + + E+QK A+K A+ + D+ +I GPPGTGKT I E + +E +
Sbjct: 172 LREDIKLEFYDKNLNESQKLAVKKAVLSRDLYLIHGPPGTGKT---RTITEVIVQEVKFN 228
Query: 79 KNIKGQILLCAQGHDATNNARERI--KVGGLPTFKFGAKKNAKEEQYKQD-ERLNERLRE 135
K+ ++L A + A +N E + K L + G ++ + L E +
Sbjct: 229 KH---KVLATADSNIAADNILEYLIKKYPDLKVVRVGHPTRISKDLIQHSLPYLIENHEK 285
Query: 136 FAETLIESVRKKLQKLGDYENIEKILDLEEALRRYYSSPISELEFLKEIEKNESF 190
+ E L ++R+K++++ E +K L RR +S+ + LK ++ +S+
Sbjct: 286 YQEIL--ALREKIKEI--KEQRDKFLKPSPRWRR----GMSDEQILKVAKRKKSY 332
>ref|NP_371366.1| (NC_002758) ABC transporter ATP-binding protein homologue
[Staphylococcus aureus subsp. aureus Mu50]
ref|NP_374035.1| (NC_002745) ABC transporter ATP-binding protein homologue
[Staphylococcus aureus subsp. aureus N315]
ref|NP_645612.1| (NC_003923) ABC transporter ATP-binding protein
homologue~ORFID:MW0795 [Staphylococcus aureus subsp.
aureus MW2]
dbj|BAB42013.1| (AP003131) ABC transporter ATP-binding protein
homologue~ORFID:SA0774 [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB57004.1| (AP003360) ABC transporter ATP-binding protein homologue
[Staphylococcus aureus subsp. aureus Mu50]
dbj|BAB94660.1| (AP004824) ABC transporter ATP-binding protein
homologue~ORFID:MW0795 [Staphylococcus aureus subsp.
aureus MW2]
Length = 253
Score = 43.1 bits (100), Expect = 0.002
Identities = 35/126 (27%), Positives = 56/126 (43%), Gaps = 14/126 (11%)
Query: 38 KAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDATN- 96
K + + +NT +I I GP GTGK+T+ +AI +P + KG++LL D N
Sbjct: 21 KGVNLTINTDEIHAIMGPNGTGKSTLSSAIM-----GHPSYEVTKGEVLL-----DGVNI 70
Query: 97 ---NARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGD 153
ER K G ++ ++ +N + E E + KKL K D
Sbjct: 71 LELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMD 130
Query: 154 YENIEK 159
+ +I+K
Sbjct: 131 FLDIDK 136
>gb|AAF46543.1| (AE003449) CG2990 gene product [Drosophila melanogaster]
Length = 1119
Score = 42.7 bits (99), Expect = 0.002
Identities = 38/114 (33%), Positives = 56/114 (48%), Gaps = 13/114 (11%)
Query: 36 QKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDAT 95
Q+ A AL T +I+G PGTGKT + A+ RL K +L+ AQ H A
Sbjct: 660 QQNAALRALTTSSHLLIKGLPGTGKTQTLVALV-RLLHLLGK------SVLITAQTHSAV 712
Query: 96 NNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLN-ERLREFAETLIESVRKKL 148
+N R+ GLP + G+ +KQ E ++ ERL + +T +E + K L
Sbjct: 713 DNLIMRLLPFGLPMMRLGSGSRI----HKQLEEISEERLTKDCKT-VEELEKAL 761
>pir||T00740 hypothetical protein F22O13.35 - Arabidopsis thaliana
Length = 814
Score = 42.7 bits (99), Expect = 0.002
Identities = 36/124 (29%), Positives = 62/124 (49%), Gaps = 27/124 (21%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKT-TVINAICERLFEEYPKDKNIKG-QILLCAQGH 92
+Q++AI L D A+I G PGTGKT T+++A+ K I+G ILL + +
Sbjct: 427 DQRQAILKILTAKDYALILGMPGTGKTSTMVHAV---------KALLIRGSSILLASYTN 477
Query: 93 DATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETL-----IESVRKK 147
A +N ++K G+ + G +DE ++E +RE + +E ++KK
Sbjct: 478 SAVDNLLIKLKAQGIEFLRIG-----------RDEAVHEEVRESCFSAMNMCSVEDIKKK 526
Query: 148 LQKL 151
L ++
Sbjct: 527 LDQV 530
>ref|NP_172361.1| (NM_100758) predicted protein [Arabidopsis thaliana]
Length = 1296
Score = 42.7 bits (99), Expect = 0.002
Identities = 36/124 (29%), Positives = 62/124 (49%), Gaps = 27/124 (21%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKT-TVINAICERLFEEYPKDKNIKG-QILLCAQGH 92
+Q++AI L D A+I G PGTGKT T+++A+ K I+G ILL + +
Sbjct: 891 DQRQAILKILTAKDYALILGMPGTGKTSTMVHAV---------KALLIRGSSILLASYTN 941
Query: 93 DATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETL-----IESVRKK 147
A +N ++K G+ + G +DE ++E +RE + +E ++KK
Sbjct: 942 SAVDNLLIKLKAQGIEFLRIG-----------RDEAVHEEVRESCFSAMNMCSVEDIKKK 990
Query: 148 LQKL 151
L ++
Sbjct: 991 LDQV 994
>ref|NP_113505.1| (NC_002753) component of a tRNA splicing complex [Guillardia theta]
emb|CAC27074.1| (AJ010592) component of a tRNA splicing complex [Guillardia theta]
Length = 692
Score = 42.7 bits (99), Expect = 0.002
Identities = 30/82 (36%), Positives = 38/82 (45%), Gaps = 11/82 (13%)
Query: 34 ENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPK----------DKNIKG 83
+NQ IK N I +IQGPPGTGKT I I LFEE K K
Sbjct: 217 KNQLSCIKDFQNN-HITLIQGPPGTGKTRTILGILAILFEEKKKYGIKLKISVDKKKQND 275
Query: 84 QILLCAQGHDATNNARERIKVG 105
Q+++CA + A + R+ G
Sbjct: 276 QVIICAPSNAAIDENLSRMLFG 297
>ref|NP_473096.1| (NC_000910) replication factor C, 40 kDa subunit (replication
activator) [Plasmodium falciparum]
pir||H71604 replication factor C, 40 kDa subunit (replication activator)
PFB0840w - malaria parasite (Plasmodium falciparum)
gb|AAC71957.1| (AE001420) replication factor C, 40 kDa subunit (replication
activator) [Plasmodium falciparum 3D7]
Length = 330
Score = 42.0 bits (97), Expect = 0.004
Identities = 30/84 (35%), Positives = 45/84 (52%), Gaps = 7/84 (8%)
Query: 21 KRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKN 80
KR+ + +N+ K+ ++ N P + I GPPGTGKT+ INA+ LF + +N
Sbjct: 13 KRLDDIVHQNNAVMMLKEVVRTK-NMPHL-IFHGPPGTGKTSAINALAHELFGK----EN 66
Query: 81 IKGQIL-LCAQGHDATNNARERIK 103
I ++L L A N RE+IK
Sbjct: 67 ISERVLELNASDDRGINVVREKIK 90
>pir||T00333 hypothetical protein KIAA0560 - human
Length = 1421
Score = 42.0 bits (97), Expect = 0.004
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 33 TENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGH 92
T Q +AI+ + P + ++ GPPGTGKT V I ++ +P+ + L+ +
Sbjct: 739 THTQIEAIRAGMQ-PGLTMVVGPPGTGKTDVAVQIISNIYHNFPEQRT-----LIVTHSN 792
Query: 93 DATNNARERIKV-----GGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKK 147
A N E+I L G ++ E+ + + R+N L E L+E V++
Sbjct: 793 QALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIE-LLEEVKRL 851
Query: 148 LQKLG 152
+ LG
Sbjct: 852 QKSLG 856
>ref|NP_173124.1| (NM_101541) hypothetical protein [Arabidopsis thaliana]
Length = 1939
Score = 42.0 bits (97), Expect = 0.004
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 10 SSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTP------DIAIIQGPPGTGKTTV 63
S ++ L+ ++I K+ E+Q +AI +A+ + DI++IQGPPGTGKT
Sbjct: 1081 SEVKRSDLRSLPHSLQQILKSSFNESQLQAISVAIGSSNLMKAFDISLIQGPPGTGKTRT 1140
Query: 64 INAICERL 71
I AI L
Sbjct: 1141 IVAIISGL 1148
>gb|AAG09081.1|AC026237_2 (AC026237) Similar to tRNA-splicing endonuclease positive effector
SEN1 [Arabidopsis thaliana]
Length = 2142
Score = 42.0 bits (97), Expect = 0.004
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 10 SSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTP------DIAIIQGPPGTGKTTV 63
S ++ L+ ++I K+ E+Q +AI +A+ + DI++IQGPPGTGKT
Sbjct: 1175 SEVKRSDLRSLPHSLQQILKSSFNESQLQAISVAIGSSNLMKAFDISLIQGPPGTGKTRT 1234
Query: 64 INAICERL 71
I AI L
Sbjct: 1235 IVAIISGL 1242
>gb|AAG37987.1|AF071409_1 (AF071409) replication factor C subunit 2; RFC2 [Plasmodium
falciparum]
Length = 330
Score = 42.0 bits (97), Expect = 0.004
Identities = 30/84 (35%), Positives = 45/84 (52%), Gaps = 7/84 (8%)
Query: 21 KRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKN 80
KR+ + +N+ K+ ++ N P + I GPPGTGKT+ INA+ LF + +N
Sbjct: 13 KRLDDIVHQNNAVMMLKEVVRTK-NMPHL-IFHGPPGTGKTSAINALAHELFGK----EN 66
Query: 81 IKGQIL-LCAQGHDATNNARERIK 103
I ++L L A N RE+IK
Sbjct: 67 ISERVLELNASDDRGINVVREKIK 90
>dbj|BAA25486.2| (AB011132) KIAA0560 protein [Homo sapiens]
Length = 1556
Score = 42.0 bits (97), Expect = 0.004
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 33 TENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGH 92
T Q +AI+ + P + ++ GPPGTGKT V I ++ +P+ + L+ +
Sbjct: 874 THTQIEAIRAGMQ-PGLTMVVGPPGTGKTDVAVQIISNIYHNFPEQRT-----LIVTHSN 927
Query: 93 DATNNARERIKV-----GGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKK 147
A N E+I L G ++ E+ + + R+N L E L+E V++
Sbjct: 928 QALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIE-LLEEVKRL 986
Query: 148 LQKLG 152
+ LG
Sbjct: 987 QKSLG 991
>ref|XP_029045.1| (XM_029045) KIAA0560 gene product [Homo sapiens]
Length = 1485
Score = 42.0 bits (97), Expect = 0.004
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 33 TENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGH 92
T Q +AI+ + P + ++ GPPGTGKT V I ++ +P+ + L+ +
Sbjct: 803 THTQIEAIRAGMQ-PGLTMVVGPPGTGKTDVAVQIISNIYHNFPEQRT-----LIVTHSN 856
Query: 93 DATNNARERIKV-----GGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKK 147
A N E+I L G ++ E+ + + R+N L E L+E V++
Sbjct: 857 QALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIE-LLEEVKRL 915
Query: 148 LQKLG 152
+ LG
Sbjct: 916 QKSLG 920
>ref|NP_276746.1| (NC_000916) transcriptional control factor (enhancer-binding
protein) [Methanothermobacter thermautotrophicus]
[Methanothermobacter thermautotrophicus str. Delta H]
pir||D69085 transcription control factor enhancer-binding protein -
Methanobacterium thermoautotrophicum (strain Delta H)
gb|AAB86107.1| (AE000922) transcriptional control factor (enhancer-binding
protein) [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 642
Score = 41.6 bits (96), Expect = 0.005
Identities = 34/122 (27%), Positives = 64/122 (51%), Gaps = 17/122 (13%)
Query: 34 ENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKG-QILLCAQGH 92
E+Q+ AI++AL + D +I GP GTGKT R E + + ++G ++L+ A+ +
Sbjct: 159 ESQRDAIRMALGSEDFFLIHGPFGTGKT--------RTLHELIRQEVMRGSRVLVTAESN 210
Query: 93 DATNNARERIKVGGLPTFKFG-----AKKNAKEEQYKQDERLNE--RLREFAETLIESVR 145
A +N E I G + + G +++N +E + E E ++RE+ E + E +
Sbjct: 211 AAVDNLLEGI-AGHVKCVRLGHPQRVSRENLRETLAYKIENHPEYSKVREYQEKIDELIE 269
Query: 146 KK 147
++
Sbjct: 270 ER 271
>gb|EAA13631.1| (AAAB01008978) ebiP2831 [Anopheles gambiae str. PEST]
Length = 1372
Score = 41.2 bits (95), Expect = 0.006
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 24 RKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKG 83
+K + + PT Q +AI+ + P + ++ GPPGTGKT V I L+ +P+ +
Sbjct: 781 KKNVIRFTPT--QIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNHPQQRT--- 834
Query: 84 QILLCAQGHDATNNARERIKV-----GGLPTFKFGAKKNAKEEQYKQDERLNERLREFAE 138
L+ + A N E+I L G + E+ Y + R+N L + +
Sbjct: 835 --LIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEESLETEKDYSRYGRVNYVLSKRID 892
Query: 139 TLIESVRKKLQKLG 152
L+ V++ + LG
Sbjct: 893 -LLGQVQRLQESLG 905
>gb|EAA13627.1| (AAAB01008978) agCP7606 [Anopheles gambiae str. PEST]
Length = 1131
Score = 41.2 bits (95), Expect = 0.006
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 24 RKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKG 83
+K + + PT Q +AI+ + P + ++ GPPGTGKT V I L+ +P+ +
Sbjct: 533 KKNVIRFTPT--QIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNHPQQRT--- 586
Query: 84 QILLCAQGHDATNNARERIKV-----GGLPTFKFGAKKNAKEEQYKQDERLNERLREFAE 138
L+ + A N E+I L G + E+ Y + R+N L + +
Sbjct: 587 --LIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEESLETEKDYSRYGRVNYVLSKRID 644
Query: 139 TLIESVRKKLQKLG 152
L+ V++ + LG
Sbjct: 645 -LLGQVQRLQESLG 657
>gb|EAA11585.1| (AAAB01008960) agCP5690 [Anopheles gambiae str. PEST]
Length = 769
Score = 41.2 bits (95), Expect = 0.006
Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 31/171 (18%)
Query: 35 NQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILL-CAQGH- 92
+Q A ++AL T ++IQGPPGTGKT + I E L N QILL C H
Sbjct: 278 SQFDAYRMAL-TSRFSLIQGPPGTGKTFIGLRIVETLL------ANTGEQILLICLTNHA 330
Query: 93 ------DATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRK 146
T +++GG N K Q ++DER++ RLR + K
Sbjct: 331 LDQFLCGVTRFTDSIVRMGGQSKHPLLDAYNVK--QLQEDERIDRRLRISYYNAKQEYLK 388
Query: 147 KLQKLGDYENIEKILD------------LEEALRRYYSSPISELEFLKEIE 185
+++ + ++ LD L +A RR S +S+L LK I+
Sbjct: 389 LVERFDALQQEQETLDGMTQAMQECMEELLDASRRL--SELSQLNTLKLIQ 437
>ref|NP_596055.1| (NC_003423) tRNA-splicing endonuclease positive effector
[Schizosaccharomyces pombe]
pir||T40065 tRNA-splicing endonuclease positive effector - fission yeast
(Schizosaccharomyces pombe)
emb|CAA22438.1| (AL034463) tRNA-splicing endonuclease positive effector
[Schizosaccharomyces pombe]
Length = 1944
Score = 40.8 bits (94), Expect = 0.008
Identities = 57/198 (28%), Positives = 82/198 (40%), Gaps = 38/198 (19%)
Query: 24 RKKIFKN-DPTENQKKAIKIALNTPDIAIIQGPPGTGKT--------TVINAICERLFEE 74
++KI K+ E Q AI + +IQGPPGTGKT V+ + + L
Sbjct: 1262 KQKIMKSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSSQGLQFN 1321
Query: 75 YPKD--KNIKGQILLCAQGHDATNNARERIKVG-----GLPTFK------FG------AK 115
P K K +IL+CA + A + RIK G G+ F FG AK
Sbjct: 1322 VPGQTRKTSKNKILICAPSNAAIDEILLRIKAGVYDHEGIKFFPKVIRVGFGDSISVHAK 1381
Query: 116 KNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILDLEEALRRYYS--- 172
+ EEQ + L ++ RKK + I+K L E L ++ S
Sbjct: 1382 EFTLEEQMIKQMELTNLKKDQEANNSSDTRKKYDSI-----IKKRDSLREDLEKFRSTGK 1436
Query: 173 -SPISELEFLKEIEKNES 189
S I E + L+EI K ++
Sbjct: 1437 NSSILEAQ-LREITKQKN 1453
>ref|NP_109769.1| (NC_000912) glutamine transport ATP-binding protein [Mycoplasma
pneumoniae]
sp|P75612|Y065_MYCPN Hypothetical ABC transporter ATP-binding protein MG065 homolog
(R02_orf465)
pir||S73400 glutamine transport ATP-binding protein glnQ - Mycoplasma
pneumoniae (strain ATCC 29342)
gb|AAB95722.1| (AE000009) glutamine transport ATP-binding protein [Mycoplasma
pneumoniae]
Length = 465
Score = 40.8 bits (94), Expect = 0.008
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 23/156 (14%)
Query: 6 KEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVIN 65
KE ++ ++ ++L K V K I T K I + L D +I GP G+GKTT++N
Sbjct: 221 KESVTPDEEHIIEL-KNVYKYITNGVTTNAVLKGIDLKLKAHDFIVILGPSGSGKTTLLN 279
Query: 66 AICERLFEEYPKDKN--IKGQILLCAQGHDATNNARERI-----KVGGLPTFKFGAKKNA 118
I + P + + GQ ++C TN R + + G LP ++N
Sbjct: 280 IISGM---DRPSSGSVVVNGQEMICMNDRQLTNFRRNYVGYIFQQYGLLPNLT--VRENV 334
Query: 119 K---EEQYKQDERLNERLREFAETLIESV-RKKLQK 150
+ Q D+R+N + L+E+V K LQK
Sbjct: 335 EVGANLQRNPDKRIN------IDELLEAVGMKHLQK 364
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.314 0.135 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,622,527
Number of Sequences: 1026957
Number of extensions: 4915079
Number of successful extensions: 27172
Number of sequences better than 1.0e-02: 71
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 27129
Number of HSP's gapped (non-prelim): 73
length of query: 191
length of database: 324,149,939
effective HSP length: 114
effective length of query: 77
effective length of database: 207,076,841
effective search space: 15944916757
effective search space used: 15944916757
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 94 (40.8 bits)