BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645064|ref|NP_207234.1| hypothetical protein
[Helicobacter pylori 26695]
         (121 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207234.1|  (NC_000915) hypothetical protein [Helicoba...   236  3e-62
ref|NP_207778.1|  (NC_000915) hypothetical protein [Helicoba...    65  1e-10

>ref|NP_207234.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64574 hypothetical protein HP0436 - Helicobacter pylori (strain 26695)
 gb|AAD07507.1| (AE000559) H. pylori predicted coding region HP0436 [Helicobacter
           pylori 26695]
          Length = 121

 Score =  236 bits (603), Expect = 3e-62
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MRAFFNSSMREKLSQLKARQQKQEMPANLSIIHALRATQEGFEDDGVMRNYDLLESQFKE 60
           MRAFFNSSMREKLSQLKARQQKQEMPANLSIIHALRATQEGFEDDGVMRNYDLLESQFKE
Sbjct: 1   MRAFFNSSMREKLSQLKARQQKQEMPANLSIIHALRATQEGFEDDGVMRNYDLLESQFKE 60

Query: 61  NLTKEDRELLESPKPNLEKLQELKIRLLEKNGIFKPPKQKSQISLVFGMNALVPLGTIKT 120
           NLTKEDRELLESPKPNLEKLQELKIRLLEKNGIFKPPKQKSQISLVFGMNALVPLGTIKT
Sbjct: 61  NLTKEDRELLESPKPNLEKLQELKIRLLEKNGIFKPPKQKSQISLVFGMNALVPLGTIKT 120

Query: 121 L 121
           L
Sbjct: 121 L 121



>ref|NP_207778.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64643 hypothetical protein HP0987 - Helicobacter pylori (strain 26695)
 gb|AAD08040.1| (AE000607) H. pylori predicted coding region HP0987 [Helicobacter
           pylori 26695]
          Length = 77

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 36/56 (64%), Positives = 38/56 (67%)

Query: 66  DRELLESPKPNLEKLQELKIRLLEKNGIFKPPKQKSQISLVFGMNALVPLGTIKTL 121
           D  L    KP      ++  RLL K   FKPPKQKSQISLVFGMNALVPLGTIKTL
Sbjct: 22  DDILKHMQKPRFSDSDKVDKRLLIKFNQFKPPKQKSQISLVFGMNALVPLGTIKTL 77



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.315    0.133    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,672,041
Number of Sequences: 1026957
Number of extensions: 2619096
Number of successful extensions: 10292
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10290
Number of HSP's gapped (non-prelim): 2
length of query: 121
length of database: 324,149,939
effective HSP length: 97
effective length of query: 24
effective length of database: 224,535,110
effective search space: 5388842640
effective search space used: 5388842640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)