BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645067|ref|NP_207237.1| hypothetical protein
[Helicobacter pylori 26695]
(366 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207237.1| (NC_000915) hypothetical protein [Helicoba... 722 0.0
ref|NP_223639.1| (NC_000921) putative [Helicobacter pylori ... 231 1e-59
gb|AAM03034.1|AF487344_8 (AF487344) putative VirB8 [Helicob... 150 3e-35
emb|CAA10655.1| (AJ132366) ComB1 protein [Helicobacter pylori] 146 4e-34
ref|NP_222756.1| (NC_000921) DNA transformation competancy ... 145 9e-34
ref|NP_206840.1| (NC_000915) hypothetical protein [Helicoba... 142 8e-33
gb|AAF97745.1|AF226280_1 (AF226280) ComB1 [Campylobacter je... 125 1e-27
gb|AAM43803.1| (AY099094) VirB8 long form [Bartonella quint... 54 3e-06
gb|AAM43802.1| (AY099093) VirB8 [Bartonella quintana] 53 5e-06
ref|NP_220673.1| (NC_000963) unknown [Rickettsia prowazekii... 53 5e-06
ref|NP_360024.1| (NC_003103) unknown [Rickettsia conorii] >... 53 6e-06
gb|AAF00946.1|AF182718_7 (AF182718) VirB8 homolog [Bartonel... 52 8e-06
ref|NP_052747.1| (NC_001496) pXO1-51 [Bacillus anthracis] >... 42 0.009
>ref|NP_207237.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64574 hypothetical protein HP0439 - Helicobacter pylori (strain 26695)
gb|AAD07508.1| (AE000559) H. pylori predicted coding region HP0439 [Helicobacter
pylori 26695]
Length = 366
Score = 722 bits (1864), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MSKRSEVLEQFHGGLKNLELQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLKA 60
MSKRSEVLEQFHGGLKNLELQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLKA
Sbjct: 1 MSKRSEVLEQFHGGLKNLELQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLKA 60
Query: 61 DNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEEPVIETEKKETSQNEPIQEK 120
DNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEEPVIETEKKETSQNEPIQEK
Sbjct: 61 DNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEEPVIETEKKETSQNEPIQEK 120
Query: 121 KERIFKNFFSRIGFDKSIAPTMLFEEVRDASVIYHLEKKLGDYIFYVACFFFGTTALLII 180
KERIFKNFFSRIGFDKSIAPTMLFEEVRDASVIYHLEKKLGDYIFYVACFFFGTTALLII
Sbjct: 121 KERIFKNFFSRIGFDKSIAPTMLFEEVRDASVIYHLEKKLGDYIFYVACFFFGTTALLII 180
Query: 181 LLTILLPLKQKEPYLVQFSNNKENFALVQKADSSITANKALIRSLVGAYVLNRESITHIE 240
LLTILLPLKQKEPYLVQFSNNKENFALVQKADSSITANKALIRSLVGAYVLNRESITHIE
Sbjct: 181 LLTILLPLKQKEPYLVQFSNNKENFALVQKADSSITANKALIRSLVGAYVLNRESITHIE 240
Query: 241 QHEKMRQNTIKEQSSNEVWYEFEKLIAHYDSIYTNPLLTRKVKIANIYLDKDLAYIDIEV 300
QHEKMRQNTIKEQSSNEVWYEFEKLIAHYDSIYTNPLLTRKVKIANIYLDKDLAYIDIEV
Sbjct: 241 QHEKMRQNTIKEQSSNEVWYEFEKLIAHYDSIYTNPLLTRKVKIANIYLDKDLAYIDIEV 300
Query: 301 SLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAI 360
SLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAI
Sbjct: 301 SLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAI 360
Query: 361 GLFLAS 366
GLFLAS
Sbjct: 361 GLFLAS 366
>ref|NP_223639.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71871 hypothetical protein jhp0921 - Helicobacter pylori (strain J99)
gb|AAD06498.1| (AE001521) putative [Helicobacter pylori J99]
Length = 328
Score = 231 bits (588), Expect = 1e-59
Identities = 124/260 (47%), Positives = 175/260 (66%), Gaps = 5/260 (1%)
Query: 96 KEFVEEPVIETEKKETSQNEPIQEKKERIFKNFFSRIGFDKS--IAPTMLFEEVRDASVI 153
K EE + E K + + + Q +E+ F ++G K + TMLF+EV++A V+
Sbjct: 34 KAINEEELEEQVKAKAKEQQKTQ--REKTLNGFLKKVGLKKRDMLQSTMLFDEVKEADVL 91
Query: 154 YHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENFALVQKADS 213
+ E+K+GD+IF A FFF + I++ LLPLK+K PYLV FSN +NFA+VQ+AD
Sbjct: 92 FQAERKIGDWIFSSAVFFFALALIEAIIIVCLLPLKEKVPYLVTFSNATQNFAIVQRADK 151
Query: 214 SITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKLIAHYDSIY 273
SI AN+AL+R LV +YV NRE+I+ I++ ++ TI+ QS+ EVW FEKL+++ SIY
Sbjct: 152 SIRANQALVRQLVASYVNNRENISSIKEQNEIAHETIRLQSAFEVWDFFEKLVSYEHSIY 211
Query: 274 TNPLLTRKVKIANIYL-DKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEINFDSM 332
TN LTRK+ I NI L K A I+I L+H +LES KRY+++M+FEF+ EI+ S+
Sbjct: 212 TNINLTRKISIINIALISKTQANIEISAQLFHKEKLESEKRYRIIMTFEFEPIEIDTKSV 271
Query: 333 SLNPTGFMVTSYDVTEIAIV 352
LNPTGF+VT YDVTEIAI+
Sbjct: 272 PLNPTGFIVTGYDVTEIAIL 291
>gb|AAM03034.1|AF487344_8 (AF487344) putative VirB8 [Helicobacter pylori]
Length = 352
Score = 150 bits (378), Expect = 3e-35
Identities = 111/344 (32%), Positives = 182/344 (52%), Gaps = 43/344 (12%)
Query: 42 LEEIENELKQLEN--------KENLKA----------------DNNTEFKEENQDTKENQ 77
L+E+ LK+LEN KEN+K + N + + QDTKENQ
Sbjct: 4 LQELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQ 63
Query: 78 PNDLFSLPLPTQTTINGIKEFVEEPVIETEKKETSQNEPIQEKKERIFKNFFSRIGFDKS 137
+ S+ QT+I +E + I EK E E + K +RI + S
Sbjct: 64 EELIKSI----QTSIAKNQELEK---ISFEKWENKIQERVLPKLKRIVTHKLQE-SITSS 115
Query: 138 IAPTM--LFEEVRDASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYL 195
I + ++ D S ++ +++K + +A L I + I++PLK+ PY
Sbjct: 116 INTQLESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIIALSIAIFIMMPLKENTPYF 175
Query: 196 VQFSNNKENFALVQKADSSITANKALIRSLVGAYVLNRESITHIEQHEKMRQN-TIKEQS 254
+ F+N+ ++FA+VQ+AD+ + ++A +R+LVG+Y+ RE+I HI+ +K+R N TI+EQS
Sbjct: 176 IDFANSDKHFAVVQRADTKVDYSEAFLRNLVGSYITARETINHID--DKIRLNETIREQS 233
Query: 255 SNEVWYEFEKLIAHYDSIYTNPLLTRKVKIANIYLDK-----DLAYIDIEVSLYHSGELE 309
S EVW E+L++ SIY+N + R++KI NI + K ++A DI ++ G L
Sbjct: 234 SEEVWKTLEQLVSGKGSIYSNSNMDREIKIINISIYKQGKQQNIAVADIVAKVFDKGYLI 293
Query: 310 SLKRYKVVMSFEFKKQ-EINFDSMSLNPTGFMVTSYDVTEIAIV 352
KR +V + + FK + ++ SM NPTGF+V Y ++EIA +
Sbjct: 294 CEKRDRVSLIYHFKPLIQFDYSSMPKNPTGFIVDKYSLSEIASI 337
>emb|CAA10655.1| (AJ132366) ComB1 protein [Helicobacter pylori]
Length = 247
Score = 146 bits (368), Expect = 4e-34
Identities = 82/209 (39%), Positives = 124/209 (59%), Gaps = 6/209 (2%)
Query: 149 DASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENFALV 208
D ++ LE+ + + +L I+L LLPL++ E + V F N +++A++
Sbjct: 38 DMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISLLPLQKTEHHFVDFLNQDKHYAII 97
Query: 209 QKADSSITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKLIAH 268
Q+AD SI++N+AL RSL+GAYVLNRESI I+ +K R ++ QSS++VW FE LI
Sbjct: 98 QRADKSISSNEALARSLIGAYVLNRESINRID--DKSRYELVRLQSSSKVWQRFEDLIKT 155
Query: 269 YDSIYTNPLLTRKVKIANIYL----DKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKK 324
+SIY L R+V I NI + + +A + I L + +L KRYK+V+S+ F
Sbjct: 156 QNSIYVQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDT 215
Query: 325 QEINFDSMSLNPTGFMVTSYDVTEIAIVN 353
+ ++ SM NPTGF +T Y +TEIA N
Sbjct: 216 PDFDYASMPKNPTGFKITRYSITEIAPTN 244
>ref|NP_222756.1| (NC_000921) DNA transformation competancy [Helicobacter pylori J99]
pir||H71980 DNA transformation competancy - Helicobacter pylori (strain J99)
gb|AAD05621.1| (AE001443) DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 145 bits (365), Expect = 9e-34
Identities = 81/209 (38%), Positives = 124/209 (58%), Gaps = 6/209 (2%)
Query: 149 DASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENFALV 208
D ++ LE+ + + +L I+L +LPL++ E + V F N +++A++
Sbjct: 38 DMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKTEHHFVDFLNQDKHYAII 97
Query: 209 QKADSSITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKLIAH 268
Q+AD SI++N+AL RSL+GAYVLNRESI I+ +K R ++ QSS++VW FE LI
Sbjct: 98 QRADKSISSNEALARSLIGAYVLNRESINRID--DKSRYELVRLQSSSKVWQRFEDLIKA 155
Query: 269 YDSIYTNPLLTRKVKIANIYL----DKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKK 324
+SIY L R+V I NI + + +A + I L + +L KRYK+V+S+ F
Sbjct: 156 QNSIYVQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDT 215
Query: 325 QEINFDSMSLNPTGFMVTSYDVTEIAIVN 353
+ ++ SM NPTGF +T Y +TEIA N
Sbjct: 216 PDFDYASMPKNPTGFKITRYSITEIAPTN 244
>ref|NP_206840.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64524 hypothetical protein HP0038 - Helicobacter pylori (strain 26695)
gb|AAD07118.1| (AE000526) H. pylori predicted coding region HP0038 [Helicobacter
pylori 26695]
Length = 245
Score = 142 bits (357), Expect = 8e-33
Identities = 79/205 (38%), Positives = 122/205 (58%), Gaps = 6/205 (2%)
Query: 149 DASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENFALV 208
D ++ LE+ + + +L I+L +LPL++ E + V F N +++A++
Sbjct: 38 DMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHFVDFLNQDKHYAII 97
Query: 209 QKADSSITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKLIAH 268
Q+AD SI++N+AL RSL+GAYVLNRESI I+ +K R ++ QSS++VW FE LI
Sbjct: 98 QRADKSISSNEALARSLIGAYVLNRESINRID--DKSRYELVRLQSSSKVWQRFEDLIKT 155
Query: 269 YDSIYTNPLLTRKVKIANIYL----DKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKK 324
+SIY L R+V I NI + + +A + I L + +L KRYK+V+S+ F
Sbjct: 156 QNSIYVQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDT 215
Query: 325 QEINFDSMSLNPTGFMVTSYDVTEI 349
+ ++ SM NPTGF +T Y +TEI
Sbjct: 216 PDFDYASMPKNPTGFKITRYSITEI 240
>gb|AAF97745.1|AF226280_1 (AF226280) ComB1 [Campylobacter jejuni]
Length = 225
Score = 125 bits (313), Expect = 1e-27
Identities = 67/207 (32%), Positives = 117/207 (56%), Gaps = 4/207 (1%)
Query: 145 EEVRDASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKEN 204
++ +D + I+ LE+ + Y+ Y+ L I +T L P K+ +PYLV FS+ + N
Sbjct: 5 DDKKDPNFIFQLERNIKAYMLYIIIALTTIVVSLAIAITFLAPFKEVKPYLVFFSDGETN 64
Query: 205 FALVQKADSSITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEK 264
F V++A + A++ L++S++ YV RE+I ++ E R I+ QS VW F
Sbjct: 65 FVKVEQAGMDMRADENLLKSILAGYVKKRETINRVDDSE--RYEEIRLQSQKNVWETFSN 122
Query: 265 LIAHYDSIYTNPLLTRKVKIANIYL-DKDLAYIDIEVSLYH-SGELESLKRYKVVMSFEF 322
L+ +SIYT + R ++I N+ + +K++A ID + + G LK+Y+ + F+F
Sbjct: 123 LVKAPNSIYTTQGVFRSIEIINVSIFNKNVATIDFIAKITNRDGSENHLKKYRATLFFDF 182
Query: 323 KKQEINFDSMSLNPTGFMVTSYDVTEI 349
E+ ++S+ NPTGF+V Y +T+I
Sbjct: 183 IPMELTYNSVPKNPTGFIVKQYSITDI 209
>gb|AAM43803.1| (AY099094) VirB8 long form [Bartonella quintana]
Length = 234
Score = 53.9 bits (128), Expect = 3e-06
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 123 RIFKNFFSRIGFDKSIAPTMLFEEVRDASVIYHLEKKLGDYIFYVACFFFGTTALLIILL 182
+I K+ FD+ + F D ++ L++++ + F T AL + +
Sbjct: 7 KIRKSLVKSDAFDEYVKEARSF----DIDRMHSLQQRMRIAMTLTVLFGLMTIALALAVA 62
Query: 183 TILLPLKQKEPYLVQFSNNKENFALVQKA-DSSITANKALIRSLVGAYVLNRESITHIEQ 241
L PLK EP++++ N+ V ++ ++A+ R G YV RE E
Sbjct: 63 A-LTPLKTVEPFVIRVDNSTGIIETVSALKETPNNYDEAITRYFAGKYVRAREGFQLSEA 121
Query: 242 HEKMRQNTI----KEQSSNEVWYEFEKLIAHYDSIYTNPLLTRKVKIANI-YLDKDLAYI 296
R ++ +EQ+ WY + +IY N +T KV I +I +L KDL +
Sbjct: 122 EYNFRLISLLSSPEEQNRFAKWYSGNNPESP-QNIYHN--MTAKVTIKSISFLSKDLIQV 178
Query: 297 DIEVSLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGFMVTSY 344
++ E++ + +++F + I+ + +NP GF V+ Y
Sbjct: 179 RYYKTIRELNGKENISHWVSILNFSYINAHISTEDRLINPLGFQVSEY 226
>gb|AAM43802.1| (AY099093) VirB8 [Bartonella quintana]
Length = 202
Score = 53.1 bits (126), Expect = 5e-06
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 175 TALLIILLTILLPLKQKEPYLVQFSNNKENFALVQKA-DSSITANKALIRSLVGAYVLNR 233
T L + + L PLK EP++++ N+ V ++ ++A+ R G YV R
Sbjct: 22 TIALALAVAALTPLKTVEPFVIRVDNSTGIIETVSALKETPNNYDEAITRYFAGKYVRAR 81
Query: 234 ESITHIEQHEKMRQNTI----KEQSSNEVWYEFEKLIAHYDSIYTNPLLTRKVKIANI-Y 288
E E R ++ +EQ+ WY + +IY N +T KV I +I +
Sbjct: 82 EGFQLSEAEYNFRLISLLSSPEEQNRFAKWYSGNNPESP-QNIYHN--MTAKVTIKSISF 138
Query: 289 LDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGFMVTSY 344
L KDL + ++ E++ + +++F + I+ + +NP GF V+ Y
Sbjct: 139 LSKDLIQVRYYKTIRELNGKENISHWVSILNFSYINAHISTEDRLINPLGFQVSEY 194
>ref|NP_220673.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZDN8|Y289_RICPR Hypothetical protein RP289
pir||D71684 hypothetical protein RP289 - Rickettsia prowazekii
emb|CAA14750.1| (AJ235271) unknown [Rickettsia prowazekii]
Length = 243
Score = 53.1 bits (126), Expect = 5e-06
Identities = 43/189 (22%), Positives = 89/189 (46%), Gaps = 21/189 (11%)
Query: 177 LLIILLTILLPL-----------KQKEPYLVQFSNNKENFALVQKADSS-ITANKALIRS 224
+LIILLTI + + KQ +P+++Q ++N A+V+ SS +T +++L R
Sbjct: 56 ILIILLTIFMVISTLVIAFVVKSKQFDPFVIQLNSNTGRAAVVEPISSSMLTVDESLTRY 115
Query: 225 LVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKLIAHYDSIYTNPLLTRKVKI 284
+ Y+ RE+ ++ + + T++ S++ V+Y + I + D +P L K
Sbjct: 116 FIKKYITARETYNPVD-FATIARTTVRLFSTSAVYYNYLGYIRNKDF---DPTLKYKEDN 171
Query: 285 ANIYLDKDLAYID-----IEVSLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGF 339
+ K + I + S+ + + + V+S+++ ++ + +NP GF
Sbjct: 172 TTFLVIKSWSKIADDKYIVRFSVNETSGSQLVYNKIAVVSYDYVPMQLTDSELDINPVGF 231
Query: 340 MVTSYDVTE 348
V Y V +
Sbjct: 232 QVNGYRVDD 240
>ref|NP_360024.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL02925.1| (AE008603) unknown [Rickettsia conorii]
Length = 243
Score = 52.8 bits (125), Expect = 6e-06
Identities = 44/189 (23%), Positives = 89/189 (46%), Gaps = 21/189 (11%)
Query: 177 LLIILLTILLPL-----------KQKEPYLVQFSNNKENFALVQKADSSI-TANKALIRS 224
+LIILLTI + + KQ EP+++Q ++N ++V+ S + TA+++L R
Sbjct: 56 ILIILLTIFMVIATLVIAFVVKSKQFEPFVIQLNSNTGRASVVEPISSPVLTADESLTRY 115
Query: 225 LVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKLIAHYDSIYTNPLLTRKVKI 284
+ Y+ RE+ ++ + + TI+ S++ V+Y + I + D +P L K +
Sbjct: 116 FIKKYITARETYNPVD-FATIARTTIRLFSTSSVYYNYLGYIRNKDF---DPTLKYKEEN 171
Query: 285 ANIYLDKDLAYID-----IEVSLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGF 339
+ K + I + S+ + + + V+S+ + ++ + +NP GF
Sbjct: 172 TTFLVVKSWSKIAADKYIVRFSVNETSGNQLVYNKIAVVSYAYVPMQLTDSELDVNPVGF 231
Query: 340 MVTSYDVTE 348
V Y V +
Sbjct: 232 QVNGYRVDD 240
>gb|AAF00946.1|AF182718_7 (AF182718) VirB8 homolog [Bartonella henselae]
Length = 202
Score = 52.4 bits (124), Expect = 8e-06
Identities = 41/175 (23%), Positives = 77/175 (43%), Gaps = 7/175 (4%)
Query: 175 TALLIILLTILLPLKQKEPYLVQFSNNKENFALVQKA-DSSITANKALIRSLVGAYVLNR 233
T L + + L PLK EP++++ N+ V ++ ++A+ R YV R
Sbjct: 22 TIALALAVAALTPLKTVEPFVIRVDNSTGIIETVSALKETPNDYDEAITRYFASKYVRAR 81
Query: 234 ESITHIEQHEKMRQNTI----KEQSSNEVWYEFEKLIAHYDSIYTNPLLTRKVKIANIYL 289
E E R ++ +EQS WY + +IY N + T +K + +L
Sbjct: 82 EGFQLSEAEHNFRLVSLLSSPEEQSRFAKWYAGNNPESP-QNIYQNMIATVTIKSIS-FL 139
Query: 290 DKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGFMVTSY 344
KDL + ++ + E++ + +++F + +I+ +NP GF V+ Y
Sbjct: 140 SKDLIQVRYYKTVRELNDKENISHWVSILNFSYINAQISTQDRLINPLGFQVSEY 194
>ref|NP_052747.1| (NC_001496) pXO1-51 [Bacillus anthracis]
ref|NP_652841.1| (NC_003980) hypothetical protein, (pXO1-51) [Bacillus anthracis
str. A2012]
pir||C59097 hypothetical protein pXO1-51 - Bacillus anthracis virulence plasmid
pXO1
gb|AAD32355.1|AAD32355 (AF065404) pXO1-51 [Bacillus anthracis]
gb|AAM26031.1| (AE011190) hypothetical protein, (pXO1-51) [Bacillus anthracis str.
A2012]
Length = 492
Score = 42.4 bits (98), Expect = 0.009
Identities = 61/257 (23%), Positives = 108/257 (41%), Gaps = 37/257 (14%)
Query: 41 FLEEIENELKQLEN-----------KENLKADNN--TEFKEENQDTKENQPNDLFSLPLP 87
+L E++ ++ +EN K +A N +EF + + +D+ S+P
Sbjct: 242 YLNELQIDVNYIENLYDDGYTYPLLKGYTEAPENYRSEFMLQRYKEMLQKESDILSIPKW 301
Query: 88 TQTTINGIKEFVEEPVIETE-KKETSQNEPIQEKKERIFKNFFSRIGFDKSIAPTMLFEE 146
Q IN I V+ P+++ E K ET Q+ + F ++ AP + +
Sbjct: 302 KQGRINYI---VKNPIVDQELKNETEQDF-----------DHFIKVLLANQEAPISIIDA 347
Query: 147 VRDASV-IYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENF 205
D +YH ++ DYIF+VA L LL I PL Q+E LV + ++
Sbjct: 348 GSDWDKDLYHEICEMADYIFFVA------EPDLHQLLKIAHPLTQRERKLVSYLALEKTR 401
Query: 206 ALVQKADSSITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKL 265
+ K ++ ++ ++ G VL + IE + + N+ SS + E E +
Sbjct: 402 IIGNKFSPALLKHE-VVEECFGDKVLTALASYEIEDVFESQLNSSTLLSSRNYYKELEGI 460
Query: 266 IAHY-DSIYTNPLLTRK 281
+ D + N LL +K
Sbjct: 461 LKEIADLLLPNQLLNQK 477
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.315 0.134 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,531,771
Number of Sequences: 1026957
Number of extensions: 9265753
Number of successful extensions: 45286
Number of sequences better than 1.0e-02: 13
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 45264
Number of HSP's gapped (non-prelim): 13
length of query: 366
length of database: 324,149,939
effective HSP length: 122
effective length of query: 244
effective length of database: 198,861,185
effective search space: 48522129140
effective search space used: 48522129140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 98 (42.4 bits)