BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645070|ref|NP_207240.1| hypothetical protein
[Helicobacter pylori 26695]
(88 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207240.1| (NC_000915) hypothetical protein [Helicoba... 178 1e-44
gb|AAM03031.1|AF487344_5 (AF487344) unknown [Helicobacter p... 56 1e-07
ref|NP_207255.1| (NC_000915) hypothetical protein [Helicoba... 55 1e-07
ref|NP_222736.1| (NC_000921) putative [Helicobacter pylori ... 50 4e-06
ref|NP_206818.1| (NC_000915) hypothetical protein [Helicoba... 50 4e-06
>ref|NP_207240.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64575 hypothetical protein HP0442 - Helicobacter pylori (strain 26695)
gb|AAD07509.1| (AE000559) H. pylori predicted coding region HP0442 [Helicobacter
pylori 26695]
Length = 88
Score = 178 bits (452), Expect = 1e-44
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFIFY 60
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFIFY
Sbjct: 1 MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFIFY 60
Query: 61 ILEFFDEDITAILHALFTLRTGARNYYA 88
ILEFFDEDITAILHALFTLRTGARNYYA
Sbjct: 61 ILEFFDEDITAILHALFTLRTGARNYYA 88
>gb|AAM03031.1|AF487344_5 (AF487344) unknown [Helicobacter pylori]
Length = 87
Score = 55.8 bits (133), Expect = 1e-07
Identities = 35/90 (38%), Positives = 52/90 (56%), Gaps = 7/90 (7%)
Query: 3 LHIVCVESINIREISKRETFLGLNLDSWIVS----FLMSAWLLSFQPLYAMGLMASCVFI 58
+ +V + N++EIS +E FL LN S+++S F+M WL L + L + I
Sbjct: 1 MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWL---DILNSFVLYVCFLLI 57
Query: 59 FYILEFFDEDITAILHALFTLRTGARNYYA 88
F I EFFDEDI+ IL A ++T A ++YA
Sbjct: 58 FSIAEFFDEDISDILIAHSKIKTKANSFYA 87
>ref|NP_207255.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64577 hypothetical protein HP0457 - Helicobacter pylori (strain 26695)
gb|AAD07535.1| (AE000561) H. pylori predicted coding region HP0457 [Helicobacter
pylori 26695]
Length = 87
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/90 (38%), Positives = 52/90 (56%), Gaps = 7/90 (7%)
Query: 3 LHIVCVESINIREISKRETFLGLNLDSWIVS----FLMSAWLLSFQPLYAMGLMASCVFI 58
+ +V + N++EIS +E FL LN S+++S F+M WL L + L + I
Sbjct: 1 MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWL---DILNSFVLYVCFLLI 57
Query: 59 FYILEFFDEDITAILHALFTLRTGARNYYA 88
F I EFFDEDI+ IL A ++T A ++YA
Sbjct: 58 FSIAEFFDEDISDILIAHSKIKTKANSFYA 87
>ref|NP_222736.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71984 hypothetical protein jhp0014 - Helicobacter pylori (strain J99)
gb|AAD05596.1| (AE001441) putative [Helicobacter pylori J99]
Length = 87
Score = 50.4 bits (119), Expect = 4e-06
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 11/83 (13%)
Query: 12 NIREISKRETFLGLNLDSWIVS----FLMSAW--LLSFQPLYAMGLMASCVFIFYILEFF 65
N+REIS +E FL LN S+++S F++ W LLS LY +G +A +F +LEFF
Sbjct: 10 NLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLY-LGFLA----LFSVLEFF 64
Query: 66 DEDITAILHALFTLRTGARNYYA 88
DEDI I+ A ++T + Y A
Sbjct: 65 DEDIADIIIAKSKIKTKTKCYRA 87
>ref|NP_206818.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64521 hypothetical protein HP0016 - Helicobacter pylori (strain 26695)
gb|AAD07092.1| (AE000524) H. pylori predicted coding region HP0016 [Helicobacter
pylori 26695]
Length = 87
Score = 50.4 bits (119), Expect = 4e-06
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 11/83 (13%)
Query: 12 NIREISKRETFLGLNLDSWIVS----FLMSAW--LLSFQPLYAMGLMASCVFIFYILEFF 65
N+REIS +E FL LN S+++S F++ W LLS LY +G +A +F +LEFF
Sbjct: 10 NLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLY-LGFLA----LFSVLEFF 64
Query: 66 DEDITAILHALFTLRTGARNYYA 88
DEDI I+ A ++T + Y A
Sbjct: 65 DEDIADIIVAKSKIKTKTKCYRA 87
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.334 0.143 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,374,657
Number of Sequences: 1026957
Number of extensions: 1681919
Number of successful extensions: 9716
Number of sequences better than 1.0e-02: 5
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9713
Number of HSP's gapped (non-prelim): 5
length of query: 88
length of database: 324,149,939
effective HSP length: 64
effective length of query: 24
effective length of database: 258,424,691
effective search space: 6202192584
effective search space used: 6202192584
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 90 (39.3 bits)