BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645074|ref|NP_207244.1| hypothetical protein
[Helicobacter pylori 26695]
         (259 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207244.1|  (NC_000915) hypothetical protein [Helicoba...   531  e-150
gb|AAM03029.1|AF487344_2  (AF487344) unknown [Helicobacter p...   165  4e-40
ref|NP_223658.1|  (NC_000921) INTEGRASE/RECOMBINASE (XERCD F...    69  7e-11
ref|NP_207253.1|  (NC_000915) hypothetical protein [Helicoba...    64  1e-09

>ref|NP_207244.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64575 hypothetical protein HP0446 - Helicobacter pylori (strain 26695)
 gb|AAD07516.1| (AE000560) H. pylori predicted coding region HP0446 [Helicobacter
           pylori 26695]
          Length = 259

 Score =  531 bits (1369), Expect = e-150
 Identities = 259/259 (100%), Positives = 259/259 (100%)

Query: 1   MQERVFKRKVLDANILKEMHANNVCYSKHSKDRFIPFKFDKFGYVGCKLFKKILNFPSNT 60
           MQERVFKRKVLDANILKEMHANNVCYSKHSKDRFIPFKFDKFGYVGCKLFKKILNFPSNT
Sbjct: 1   MQERVFKRKVLDANILKEMHANNVCYSKHSKDRFIPFKFDKFGYVGCKLFKKILNFPSNT 60

Query: 61  TFFGGTGCKKLMELLSEIVIDSRSSKIALNRHYALTRLQWCDRTLRHNLQILERIGFLTA 120
           TFFGGTGCKKLMELLSEIVIDSRSSKIALNRHYALTRLQWCDRTLRHNLQILERIGFLTA
Sbjct: 61  TFFGGTGCKKLMELLSEIVIDSRSSKIALNRHYALTRLQWCDRTLRHNLQILERIGFLTA 120

Query: 121 FKNKKGYIFLSMHDFTKIENYEHSGLNGESNLPNSFFLGICGYLKKLFKKLKDRAFRLAN 180
           FKNKKGYIFLSMHDFTKIENYEHSGLNGESNLPNSFFLGICGYLKKLFKKLKDRAFRLAN
Sbjct: 121 FKNKKGYIFLSMHDFTKIENYEHSGLNGESNLPNSFFLGICGYLKKLFKKLKDRAFRLAN 180

Query: 181 KHGVFFLKIPKHFQMQNFNNIFLEFVSVNNPCFSYRLTYDQLVGKKIPNIKCSYQQAIVK 240
           KHGVFFLKIPKHFQMQNFNNIFLEFVSVNNPCFSYRLTYDQLVGKKIPNIKCSYQQAIVK
Sbjct: 181 KHGVFFLKIPKHFQMQNFNNIFLEFVSVNNPCFSYRLTYDQLVGKKIPNIKCSYQQAIVK 240

Query: 241 KNIHRALDELSIDKEILAS 259
           KNIHRALDELSIDKEILAS
Sbjct: 241 KNIHRALDELSIDKEILAS 259



>gb|AAM03029.1|AF487344_2 (AF487344) unknown [Helicobacter pylori]
          Length = 262

 Score =  165 bits (418), Expect = 4e-40
 Identities = 90/240 (37%), Positives = 147/240 (60%), Gaps = 9/240 (3%)

Query: 11  LDANILKEMHANNVCYSKHSKDRFIPFKFDKFGYVGCKLFK-KILNFPSNTTFFGGTGCK 69
           LD + L  ++  N+ Y+K++ + +  FK D    +  KLF   I++   + +F GG G K
Sbjct: 9   LDKDELNTLYKANLAYAKNTHEHYFKFKKD----LDYKLFNPSIMHEQGSISFVGGQGAK 64

Query: 70  KLMELLSEIVIDSRSSKIALNRHYALTRLQWCDRTLRHNLQILERIGFLTAFKNKKGYIF 129
           +L+++L ++  +++S+KIAL+RHYA   LQ   RTLR N+ ILE  GF+   K K+ Y++
Sbjct: 65  RLLDILYKLAFNAKSNKIALDRHYAKMFLQVVARTLRKNVNILEEQGFIEVIKGKQRYLY 124

Query: 130 LSMHDFTKIENYEHSGLNGESNLPNSFFLGICGYLKKLFKKLKDRAFRLANKHGVFFLKI 189
           + + D+ ++E Y + G N ++N+P+ FFL I  +L+K  K++K    ++ NK  V  + I
Sbjct: 125 VYLKDYRELEGYNYIGANQKNNIPSPFFLQIMSFLEKFAKEIK--RVKINNKECV--MHI 180

Query: 190 PKHFQMQNFNNIFLEFVSVNNPCFSYRLTYDQLVGKKIPNIKCSYQQAIVKKNIHRALDE 249
           P    MQ  NN+ L+F  ++NP  +Y L+Y  L  K IP+  C YQ AIVKKN+ +AL +
Sbjct: 181 PSQELMQRVNNVVLKFTPISNPNTTYTLSYKDLTNKDIPSNLCFYQTAIVKKNLLKALKD 240



>ref|NP_223658.1| (NC_000921) INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter
           pylori J99]
 pir||A71870 integrase/recombinase (xercd family) - Helicobacter pylori  (strain
           J99)
 gb|AAD06517.1| (AE001523) INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter
           pylori J99]
          Length = 331

 Score = 68.6 bits (166), Expect = 7e-11
 Identities = 32/79 (40%), Positives = 53/79 (66%)

Query: 61  TFFGGTGCKKLMELLSEIVIDSRSSKIALNRHYALTRLQWCDRTLRHNLQILERIGFLTA 120
           +F GG G K+L+ +L ++  +++S+KIAL+RHYA   LQ   RTL  N+ ILE  GF+  
Sbjct: 8   SFVGGQGAKRLLYILYKLAFNAKSNKIALDRHYAKMFLQVVARTLIKNVNILEEQGFIEV 67

Query: 121 FKNKKGYIFLSMHDFTKIE 139
            K K+ Y+++ + D+ ++E
Sbjct: 68  IKGKQRYLYVYLKDYRELE 86



>ref|NP_207253.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64576 hypothetical protein HP0455 - Helicobacter pylori (strain 26695)
 gb|AAD07533.1| (AE000561) H. pylori predicted coding region HP0455 [Helicobacter
           pylori 26695]
          Length = 103

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 32/91 (35%), Positives = 52/91 (56%)

Query: 98  LQWCDRTLRHNLQILERIGFLTAFKNKKGYIFLSMHDFTKIENYEHSGLNGESNLPNSFF 157
           LQ   RTLR N+ ILE  GF+   K K+ Y+++ + D+ ++E Y   G N ++N+P+ FF
Sbjct: 3   LQVVARTLRKNVNILEEQGFIEVIKGKQRYLYVYLKDYRELEGYNSVGANQKNNIPSPFF 62

Query: 158 LGICGYLKKLFKKLKDRAFRLANKHGVFFLK 188
           L I  +L+K  K+++       N   +F  K
Sbjct: 63  LQIMRFLEKFAKEIERVKITTKNVLCIFLAK 93



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.326    0.142    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,745,858
Number of Sequences: 1026957
Number of extensions: 6428882
Number of successful extensions: 15330
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15325
Number of HSP's gapped (non-prelim): 4
length of query: 259
length of database: 324,149,939
effective HSP length: 119
effective length of query: 140
effective length of database: 201,942,056
effective search space: 28271887840
effective search space used: 28271887840
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 96 (41.6 bits)