BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645075|ref|NP_207245.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(360 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207245.1| (NC_000915) conserved hypothetical protein... 715 0.0
ref|NP_214409.1| (NC_000918) DNA helicase [Aquifex aeolicus... 103 2e-21
pir||D64588 probable DNA helicase - Helicobacter pylori (st... 96 5e-19
ref|NP_276746.1| (NC_000916) transcriptional control factor... 93 4e-18
ref|NP_594119.1| (NC_003424) DNA2-NAM7 helicase family prot... 92 9e-18
ref|NP_012908.1| (NC_001143) DNA helicase 1; Hcs1p [Sacchar... 91 2e-17
emb|CAD28448.1| (AL713629) possible regulator of nonsense t... 91 3e-17
sp|Q9HEH1|RNT1_NEUCR Regulator of nonsense transcripts 1 ho... 90 4e-17
ref|NP_070217.1| (NC_000917) DNA helicase, putative [Archae... 89 8e-17
ref|NP_593080.1| (NC_003424) putative regulator of nonsense... 89 8e-17
sp|Q92900|RNT1_HUMAN Regulator of nonsense transcripts 1 (N... 89 8e-17
dbj|BAA19664.1| (D86988) KIAA0221 [Homo sapiens] 89 8e-17
pir||S62476 hypothetical protein SPAC16C9.06c - fission yea... 89 8e-17
gb|AAC51140.1| (U59323) type 1 RNA helicase pNORF1 [Homo sa... 89 8e-17
ref|NP_002902.2| (NM_002911) regulator of nonsense transcri... 89 8e-17
ref|XP_125045.1| (XM_125045) similar to Regulator of nonsen... 89 1e-16
ref|NP_109605.1| (NM_030680) regulator of nonsense transcri... 89 1e-16
gb|AAH30916.1| (BC030916) Unknown (protein for IMAGE:451135... 89 1e-16
ref|NP_173124.1| (NM_101541) hypothetical protein [Arabidop... 88 1e-16
gb|AAG09081.1|AC026237_2 (AC026237) Similar to tRNA-splicin... 88 1e-16
gb|AAC50771.1| (U65533) regulator of nonsense transcript st... 88 2e-16
gb|EAA01007.1| (AAAB01008987) ebiP4153 [Anopheles gambiae s... 88 2e-16
gb|AAL31652.1|AC079179_7 (AC079179) Putative DNA2-NAM7 heli... 87 3e-16
ref|NP_247068.1| (NC_000909) DNA-binding protein, probably ... 86 9e-16
ref|NP_227821.1| (NC_000853) DNA helicase, putative [Thermo... 85 1e-15
ref|NP_613357.1| (NC_003551) Superfamily I DNA/RNA helicase... 84 2e-15
dbj|BAA31600.1| (AB014525) KIAA0625 protein [Homo sapiens] 84 3e-15
ref|NP_055861.1| (NM_015046) KIAA0625 protein [Homo sapiens... 84 3e-15
emb|CAD13341.1| (AL159997) bA479K20.2 (KIAA0625 protein) [H... 84 3e-15
gb|AAF50482.1| (AE003556) CG7504 gene product [Drosophila m... 84 3e-15
ref|NP_578301.1| (NC_003413) dna2-nam7 helicase family prot... 84 3e-15
ref|NP_126913.1| (NC_000868) DNA helicase, putative [Pyroco... 84 3e-15
ref|NP_572767.1| (NM_132539) CG1559 gene product [Drosophil... 82 7e-15
ref|NP_013797.1| (NC_001145) Involved in mRNA degradation; ... 82 1e-14
ref|NP_194739.1| (NM_119156) putative protein [Arabidopsis ... 81 2e-14
ref|NP_142832.1| (NC_000961) DNA-binding protein [Pyrococcu... 81 2e-14
ref|NP_199512.1| (NM_124072) prematurely terminated mRNA de... 81 2e-14
gb|AAL92018.1| (AF484122) UPF1 [Arabidopsis thaliana] 81 2e-14
ref|NP_565299.1| (NM_126378) putative helicase [Arabidopsis... 80 3e-14
gb|AAB67523.1| (U21094) Sen1p [Saccharomyces cerevisiae] 80 3e-14
gb|AAB63976.1| (M74589) SEN1 [Saccharomyces cerevisiae] 80 3e-14
pir||T02699 hypothetical protein T18E12.6 - Arabidopsis tha... 80 3e-14
ref|NP_013534.1| (NC_001144) component of a nuclear-localiz... 80 3e-14
emb|CAC16347.1| (AJ300306) putative helicase [Arabidopsis t... 80 3e-14
ref|NP_179502.1| (NM_127469) putative DNA2-NAM7 helicase fa... 79 1e-13
emb|CAC10094.2| (AL442164) related to SEN1 protein [Neurosp... 78 1e-13
ref|NP_596499.1| (NC_003423) dna replication helicase [Schi... 77 3e-13
pir||T51292 Dna2p - fission yeast (Schizosaccharomyces pomb... 77 3e-13
ref|NP_496141.1| (NM_063740) NAM7 protein [Caenorhabditis e... 77 4e-13
ref|NP_496142.1| (NM_063741) NAM7 protein [Caenorhabditis e... 77 4e-13
ref|XP_030494.1| (XM_030494) KIAA1404 protein [Homo sapiens... 76 5e-13
dbj|BAB14696.1| (AK023836) unnamed protein product [Homo sa... 76 5e-13
dbj|BAA92642.1| (AB037825) KIAA1404 protein [Homo sapiens] 76 5e-13
sp|O76512|RNT1_CAEEL Regulator of nonsense transcripts 1 (N... 75 1e-12
ref|NP_490829.1| (NM_058428) Y48G8AL.6.p [Caenorhabditis el... 74 2e-12
gb|EAA11070.1| (AAAB01008960) agCP6286 [Anopheles gambiae s... 74 3e-12
ref|NP_055692.1| (NM_014877) helicase KIAA0054 [Homo sapien... 72 1e-11
ref|NP_113505.1| (NC_002753) component of a tRNA splicing c... 72 1e-11
ref|NP_588369.1| (NC_003421) putative dna-binding protein [... 71 2e-11
emb|CAD31257.1| (AL672115) PUTATIVE HELICASE PROTEIN ATP-BI... 71 2e-11
sp|Q98TR3|RNT1_FUGRU Putative regulator of nonsense transcr... 71 2e-11
ref|NP_596055.1| (NC_003423) tRNA-splicing endonuclease pos... 70 4e-11
ref|NP_280823.1| (NC_002607) DNA binding protein eukaryotic... 70 4e-11
ref|NP_588411.1| (NC_003421) hypothetical protein [Schizosa... 70 5e-11
dbj|BAB11370.1| (AB017068) contains similarity to nonsense-... 69 8e-11
ref|NP_567301.1| (NM_116792) contains similarity to nonsens... 69 1e-10
gb|EAA05697.1| (AAAB01008834) agCP13018 [Anopheles gambiae ... 68 2e-10
ref|NP_176757.1| (NM_105254) hypothetical protein [Arabidop... 67 4e-10
gb|AAF23836.1|AC007234_8 (AC007234) F1E22.16 [Arabidopsis t... 66 7e-10
ref|NP_200022.1| (NM_124588) putative protein [Arabidopsis ... 65 9e-10
gb|AAA70430.1| (L24544) DNA helicase [Homo sapiens] 65 1e-09
ref|XP_165600.1| (XM_165600) immunoglobulin mu binding prot... 65 1e-09
dbj|BAB08973.1| (AB024026) gb|AAD48967.1~gene_id:K15O15.6~s... 65 1e-09
ref|NP_198446.1| (NM_122988) DNA helicase-like [Arabidopsis... 65 1e-09
ref|NP_002171.1| (NM_002180) immunoglobulin mu binding prot... 65 1e-09
pir||A47500 Ig mu chain switch region binding protein 2 - h... 65 1e-09
ref|NP_597454.1| (NC_003232) similarity to HYPOTHETICAL ZIN... 65 2e-09
ref|NP_198519.1| (NM_123061) SEN1-like protein [Arabidopsis... 64 2e-09
gb|AAK40099.1|AF339908_1 (AF339908) RNA helicase SDE3 [Arab... 64 2e-09
ref|NP_198530.1| (NM_123073) sen1-like protein [Arabidopsis... 64 3e-09
ref|NP_506213.1| (NM_073812) NAM7 like protein [Caenorhabdi... 64 4e-09
ref|NP_198531.1| (NM_123074) sen1-like protein [Arabidopsis... 64 4e-09
ref|NP_495964.1| (NM_063563) ZK1067.2.p [Caenorhabditis ele... 63 5e-09
ref|NP_586281.1| (NC_003236) INVOLVED IN mRNA DECAY CONTROL... 63 5e-09
ref|NP_172037.1| (NM_100425) hypothetical protein [Arabidop... 63 6e-09
gb|AAF79736.1|AC005106_17 (AC005106) T25N20.11 [Arabidopsis... 63 6e-09
ref|NP_113774.1| (NM_031586) immunoglobulin S mu binding pr... 62 1e-08
ref|XP_123344.1| (XM_123344) similar to immunoglobulin S mu... 62 1e-08
ref|NP_033238.1| (NM_009212) immunoglobulin S mu binding pr... 62 1e-08
ref|NP_492670.1| (NM_060269) Y106G6D.5.p [Caenorhabditis el... 62 1e-08
ref|NP_619643.1| (NM_138698) prematurely terminated mRNA de... 61 2e-08
sp|Q60560|SMB2_MESAU DNA-BINDING PROTEIN SMUBP-2 (IMMUNOGLO... 61 2e-08
ref|NP_229212.1| (NC_000853) helicase-related protein [Ther... 60 4e-08
gb|AAF47775.1| (AE003478) CG11513 gene product [Drosophila ... 60 5e-08
ref|NP_012034.1| (NC_001140) DNA replication helicase; Dna2... 60 5e-08
dbj|BAB11372.1| (AB017068) contains similarity to nonsense-... 60 5e-08
ref|NP_112550.1| (NM_031260) Moloney leukemia virus 10-like... 59 7e-08
gb|AAK77049.1|AF340211_1 (AF340211) cardiac-specific RNA he... 59 7e-08
ref|XP_122853.1| (XM_122853) Moloney leukemia virus 10-like... 59 7e-08
ref|NP_463348.1| (NC_003197) putative superfamily I DNA hel... 59 1e-07
gb|AAF80211.1|AF282853_19 (AF282853) Cag-omega [Helicobacte... 59 1e-07
gb|AAH28188.1| (BC028188) Unknown (protein for IMAGE:438530... 59 1e-07
ref|XP_166103.1| (XM_166103) DNA2 DNA replication helicase ... 58 2e-07
sp|P51530|DN2L_HUMAN DNA2-like homolog (DNA replication hel... 58 2e-07
gb|AAF57908.1| (AE003804) CG6967-PA [Drosophila melanogaste... 57 3e-07
gb|AAF56255.1| (AE003746) CG6204 gene product [Drosophila m... 57 3e-07
gb|AAM50264.1| (AY119610) LD34829p [Drosophila melanogaster] 57 3e-07
ref|NP_176754.1| (NM_105251) hypothetical protein [Arabidop... 57 4e-07
gb|AAF23837.1|AC007234_9 (AC007234) F1E22.14 [Arabidopsis t... 57 4e-07
ref|NP_198532.1| (NM_123075) sen1-like protein [Arabidopsis... 57 4e-07
dbj|BAB11373.1| (AB017068) contains similarity to DNA helic... 57 4e-07
ref|NP_651229.1| (NM_142972) CG6204 gene product [Drosophil... 56 6e-07
gb|AAF58307.1| (AE003816) CG6701-PB [Drosophila melanogaste... 56 6e-07
gb|AAL79550.1|AF474372_1 (AF474372) helicase [Xenopus laevis] 56 7e-07
gb|EAA00145.1| (AAAB01008986) agCP9964 [Anopheles gambiae s... 55 1e-06
emb|CAB63041.1| (AL022328) dJ402G11.8 (novel protein simila... 55 2e-06
ref|NP_061868.1| (NM_018995) MOV10-like 1; novel protein si... 55 2e-06
ref|XP_131179.1| (XM_131179) similar to prematurely termina... 55 2e-06
pir||T42668 hypothetical protein DKFZp434B0717.1 - human (f... 55 2e-06
ref|NP_604339.1| (NC_003454) DNA helicase [Fusobacterium nu... 54 2e-06
gb|AAH30185.1| (BC030185) Unknown (protein for MGC:29401) [... 54 4e-06
ref|NP_603846.1| (NC_003454) DNA helicase [Fusobacterium nu... 54 4e-06
ref|NP_011103.1| (NC_001137) DNA Helicase; identified as an... 53 6e-06
ref|NP_070784.1| (NC_000917) DNA helicase, putative [Archae... 52 8e-06
dbj|BAA90895.1| (AK000033) unnamed protein product [Homo sa... 52 1e-05
ref|NP_440543.1| (NC_000911) unknown protein [Synechocystis... 52 1e-05
gb|AAD27693.1|AF125214_3 (AF125214) urease-enhancing factor... 51 2e-05
ref|NP_299688.1| (NC_002488) conserved hypothetical protein... 51 2e-05
ref|NP_491374.1| (NM_058973) DNA-binding protein [Caenorhab... 50 5e-05
gb|AAK00458.1| (AF200692) unknown [Shigella flexneri 2a] 49 7e-05
dbj|BAB84997.1| (AK074171) FLJ00244 protein [Homo sapiens] 49 1e-04
dbj|BAB21860.2| (AB051556) KIAA1769 protein [Homo sapiens] 49 1e-04
gb|AAM74197.1|AF517673_1 (AF517673) peroxisomal proliferato... 49 1e-04
ref|NP_280319.1| (NC_002607) DNA helicase; Hel [Halobacteri... 49 1e-04
dbj|BAB70969.1| (AK055611) unnamed protein product [Homo sa... 49 1e-04
ref|XP_028918.1| (XM_028918) similar to Hypothetical protei... 49 1e-04
ref|NP_342893.1| (NC_002754) Hypothetical protein [Sulfolob... 47 3e-04
ref|NP_215767.1| (NC_000962) hypothetical protein Rv1251c [... 47 3e-04
ref|NP_335734.1| (NC_002755) hypothetical protein [Mycobact... 47 3e-04
ref|NP_014149.1| (NC_001146) coiled-coil protein, contains ... 46 6e-04
gb|AAH04499.1|AAH04499 (BC004499) Unknown (protein for IMAG... 46 8e-04
gb|EAA04125.1| (AAAB01008807) agCP3739 [Anopheles gambiae s... 46 8e-04
ref|NP_066014.1| (NM_020963) Mov10, Moloney leukemia virus ... 46 8e-04
dbj|BAB13457.1| (AB046851) KIAA1631 protein [Homo sapiens] 46 8e-04
gb|AAA02813.1| (M26044) hsc82 protein [Saccharomyces cerevi... 45 0.001
ref|NP_013911.1| (NC_001145) constitutively expressed heat ... 45 0.001
gb|AAD27694.1|AF125214_4 (AF125214) HelA [Helicobacter pylori] 45 0.001
ref|NP_015084.1| (NC_001148) 82 kDa heat shock protein; hom... 45 0.002
gb|EAA03204.1| (AAAB01008026) ebiP2028 [Anopheles gambiae s... 45 0.002
ref|NP_418728.1| (NC_000913) putative frameshift suppressor... 45 0.002
gb|AAF49702.1| (AE003533) CG9425 gene product [Drosophila m... 44 0.002
ref|NP_657079.1| (NC_003995) hypothetical protein predicted... 44 0.002
gb|AAA58611.1| (M64979) glial factor-1 [Homo sapiens] 44 0.003
gb|AAL96717.1| (AC116330) DNA replication helicase dna2. [D... 43 0.005
ref|NP_193292.1| (NM_117648) SEN1 like protein [Arabidopsis... 43 0.006
pir||E71420 hypothetical protein - Arabidopsis thaliana >gi... 43 0.006
>ref|NP_207245.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||G64575 conserved hypothetical protein HP0447 - Helicobacter pylori
(strain 26695)
gb|AAD07514.1| (AE000560) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 360
Score = 715 bits (1846), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MSLANDLLEILSSQSPNDKRIRVLLEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQAL 60
MSLANDLLEILSSQSPNDKRIRVLLEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQAL
Sbjct: 1 MSLANDLLEILSSQSPNDKRIRVLLEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQAL 60
Query: 61 ERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDES 120
ERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDES
Sbjct: 61 ERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDES 120
Query: 121 QDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPH 180
QDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPH
Sbjct: 121 QDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPH 180
Query: 181 NESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKEC 240
NESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKEC
Sbjct: 181 NESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKEC 240
Query: 241 LDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVFLSSVRTR 300
LDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVFLSSVRTR
Sbjct: 241 LDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVFLSSVRTR 300
Query: 301 HTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEGKIL 360
HTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEGKIL
Sbjct: 301 HTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEGKIL 360
>ref|NP_214409.1| (NC_000918) DNA helicase [Aquifex aeolicus]
pir||D70476 DNA helicase - Aquifex aeolicus
gb|AAC07803.1| (AE000770) DNA helicase [Aquifex aeolicus]
Length = 530
Score = 103 bits (258), Expect = 2e-21
Identities = 85/282 (30%), Positives = 143/282 (50%), Gaps = 36/282 (12%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD VI+DEA +A L+ + K ++I+ GD +QLP + SQ+AQ+
Sbjct: 256 FDVVIIDEATQATEPSCLIPLIKGK-KLIMAGDHKQLPPTV----------LSQEAQE-- 302
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKP-------- 179
AL ++F ++L +L G+E + L +QY M+ + E + +FY+
Sbjct: 303 --ALSYTLF-------ERLLDLYGEEIYEILRIQYRMNKKIMEFSNKMFYEGKLIADKSV 353
Query: 180 HNESFESPLKGKHLEE--KPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAI 237
N + + + + L+E +PFK L K + +I+V+ +++R S+Y E E
Sbjct: 354 ENHTIKDLINPEKLKEIPEPFKSVLE--PEKVVVFINVRGKEKQRRGSTSFYNEEEAKVA 411
Query: 238 KECLDLFMK-DEPDFTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVFLSS 296
+ ++ MK GVI+ + +Q LE+ LK + +E+ TVD FQG+E +V+ +S
Sbjct: 412 VKIVEYLMKIGLRSEHIGVISPYEDQVNFLEELLKDF-EVEVKTVDGFQGREKEVIIISF 470
Query: 297 VRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPE 338
VR+ GFLK L VAL+R +R LI G+ + + E
Sbjct: 471 VRSNEKGEIGFLKDYRRLNVALTRARRKLITLGNEKTLSSDE 512
>pir||D64588 probable DNA helicase - Helicobacter pylori (strain 26695)
Length = 274
Score = 96.3 bits (238), Expect = 5e-19
Identities = 86/299 (28%), Positives = 147/299 (48%), Gaps = 39/299 (13%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD I+DE +A E+L + AL +++IL+GD QLP +D + ++LE + D I
Sbjct: 3 FDVTIIDETGRATAPEIL-IPALRTKKLILIGDHNQLPPSIDRYLLEQLESDDIQNLDAI 61
Query: 128 EK-ALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFES 186
++ L++S F+ L + + + + ++ M +G LVS +FYK
Sbjct: 62 DRQLLEESFFENLYKYIPESNK--------AMLNEFRMPASIGSLVSQLFYK-------- 105
Query: 187 PLKGKHLEEKPFKHNLRVLDNKP-LAWIDVKESKEKRNADGSYYRESEITAIKECLD--- 242
+ L+ K+ + D K + WI+V+ + S Y ++++ I E L+
Sbjct: 106 ----EKLKNGVIKNTSQFYDPKNIIRWINVEGEHQLEKT--SSYNKNQVQKIIELLEQIN 159
Query: 243 -LFMKDEPDFTFGVITFFSEQKRLL-----EQALKGYANLEIGTVDSFQGKEFDVVFLSS 296
+ + + T G+IT ++ QKR L + K + L+I TVD+FQG++ D++ S+
Sbjct: 160 RVLNQRKIRKTIGIITPYNAQKRCLRSEVEKYGFKNFDELKIDTVDAFQGEKADIIIYST 219
Query: 297 VRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFE-FLQSCK 354
V+T FL S L VA+SR K LI G + F+ S +K +F LQ C+
Sbjct: 220 VKT--YGNLSFLIDSKRLNVAISRAKENLIFVGKKSFFENLRSDEK--NIFSAILQVCR 274
>ref|NP_276746.1| (NC_000916) transcriptional control factor (enhancer-binding
protein) [Methanothermobacter thermautotrophicus]
[Methanothermobacter thermautotrophicus str. Delta H]
pir||D69085 transcription control factor enhancer-binding protein -
Methanobacterium thermoautotrophicum (strain Delta H)
gb|AAB86107.1| (AE000922) transcriptional control factor (enhancer-binding
protein) [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 642
Score = 93.2 bits (230), Expect = 4e-18
Identities = 94/328 (28%), Positives = 152/328 (45%), Gaps = 47/328 (14%)
Query: 39 ESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILV 98
+ +LR+ V S + + ALE + FD IVDEA++A +L+ +A A R IL
Sbjct: 337 DRILRESQVVLSTNS---SAALEYIDGLRFDVAIVDEASQATIPSILIPLARAP-RFILA 392
Query: 99 GDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITL 158
GD RQLP + S+DA E+E+ L + + K+ R++ L
Sbjct: 393 GDHRQLPPTI----------LSRDAS-ELERTLFEELIKRHPGRSRML------------ 429
Query: 159 NMQYGMHPLLGELVSDVFYKPH---NESFESPLKGKHLEEKPFKHNLRVL-DNKPLAWID 214
N QY MHP + E + FY + S E +E+ P + L D P+ +ID
Sbjct: 430 NCQYRMHPAIMEFPNREFYDGRIRAHPSLEDISIRDIIEDVPDSDICQKLADPDPVLFID 489
Query: 215 VK-----ESKEKRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQA 269
E + K + E+++ I + M +P+ G+IT + +Q L+
Sbjct: 490 TSGLDGCERRLKGSTSIQNPLEADLAVIISRSLMRMGVKPE-EIGIITPYDDQVDLISSM 548
Query: 270 LKGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAG 329
+ ++E+ +VD FQG+E DV+ +S VR+ GFLK L V+L+R +R LI+ G
Sbjct: 549 I----DVEVNSVDGFQGREKDVIIISMVRSNRNGSIGFLKDLRRLNVSLTRARRKLIIIG 604
Query: 330 DREKFDTPESKDKVSGLFEFLQSCKKEG 357
D S +++ + C+K G
Sbjct: 605 DSRTLSAHPSYRRLT------EFCRKRG 626
>ref|NP_594119.1| (NC_003424) DNA2-NAM7 helicase family protein [Schizosaccharomyces
pombe]
sp|Q92355|YDHA_SCHPO Hypothetical protein C6G9.10c in chromosome I
pir||T39072 DNA2-NAM7 helicase family protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAB03612.1| (Z81317) DNA2-NAM7 helicase family protein [Schizosaccharomyces
pombe]
Length = 1687
Score = 92.0 bits (227), Expect = 9e-18
Identities = 91/352 (25%), Positives = 156/352 (43%), Gaps = 57/352 (16%)
Query: 2 SLANDLLEILSSQS-PNDKRIRVLLEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQAL 60
+LA +E L SQS +K + +L + +++L+ + V + +G + +
Sbjct: 1315 NLAEQKVEELQSQSFTKNKEVDLLRKKAQ---------KAILKQADVVCATLSGSGHDLV 1365
Query: 61 ERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDES 120
F +VI+DEAA+A L+ ++ + ++ ILVGD QLP + + L
Sbjct: 1366 AHSSLN-FSTVIIDEAAQAVELDTIIPLRYGAKKCILVGDPNQLPPTVLSKKAASLN--- 1421
Query: 121 QDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPH 180
S+F +++ K + C L++QY MHP + S FY
Sbjct: 1422 ----------YSQSLFVRIQ------KNFSNQMCL--LSIQYRMHPDISHFPSKKFYDSR 1463
Query: 181 NESFESPLKGK----HLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITA 236
E ++ + H+ K ++ L DV+ KE+ + S Y E+
Sbjct: 1464 LEDGDNMAEKTQQVWHVNPKFTQYRL----------FDVR-GKERTSNTMSTYNLEEVEY 1512
Query: 237 IKECLDLFMKDEPDFTF----GVITFFSEQKRLLEQALKG------YANLEIGTVDSFQG 286
+ +D + PD F GVIT + Q L +A K + ++I TVD FQG
Sbjct: 1513 LVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQG 1572
Query: 287 KEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPE 338
+E D++F S V++ G GFL+ L VAL+R + +L++ G+ E T +
Sbjct: 1573 QEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDD 1624
>ref|NP_012908.1| (NC_001143) DNA helicase 1; Hcs1p [Saccharomyces cerevisiae]
sp|P34243|YKB7_YEAST HYPOTHETICAL 78.3 KD PROTEIN IN RAM2-ATP7 INTERGENIC REGION
pir||S34700 probable purine nucleotide-binding protein YKL017c - yeast
(Saccharomyces cerevisiae)
emb|CAA52266.1| (X74152) orf4; homologous to human putative GTP-binding protein
[Saccharomyces cerevisiae]
emb|CAA81852.1| (Z28017) ORF YKL017c [Saccharomyces cerevisiae]
Length = 683
Score = 90.9 bits (224), Expect = 2e-17
Identities = 85/282 (30%), Positives = 141/282 (49%), Gaps = 36/282 (12%)
Query: 68 FDSVIVDEAAKA-NPLELLMVMALAKE--RIILVGDDRQLPHYLDDEIGKKLEDESQDAQ 124
FD++I+DE ++A P + ++A + +++L GD++QLP + K ED+ ++
Sbjct: 389 FDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTI------KTEDD-KNVI 441
Query: 125 DEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESF 184
+E L D + K +R + LN+QY M+ + E S Y +
Sbjct: 442 HNLETTLFDRIIKIFPKR----------DMVKFLNVQYRMNQKIMEFPSHSMYNGKLLA- 490
Query: 185 ESPLKGKHLEEKPFKHNLRVLDNK----PLAWIDVKESKEKRNAD-----GSYYRESEIT 235
++ + + L + P D+ PL W D + + + AD GS Y E EI
Sbjct: 491 DATVANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKYNEGEIA 550
Query: 236 AIKECLD-LFMKDEPDFTFGVITFFSEQ----KRLLEQALKGYANLEIGTVDSFQGKEFD 290
+KE ++ L + P+ + GVI+ ++ Q K+L+ LK ++EI TVD FQG+E D
Sbjct: 551 IVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELK-LTDIEISTVDGFQGREKD 609
Query: 291 VVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDRE 332
V+ LS VR+ GFLK L VA++R +R L+V G+ E
Sbjct: 610 VIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIE 651
>emb|CAD28448.1| (AL713629) possible regulator of nonsense transcripts [Aspergillus
fumigatus]
Length = 1060
Score = 90.5 bits (223), Expect = 3e-17
Identities = 75/274 (27%), Positives = 133/274 (48%), Gaps = 39/274 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F +V++DE+ ++ E ++ + L ++++LVGD +QL + ++
Sbjct: 566 FRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNK---------------- 609
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECF-ITLNMQYGMHPLLGELVSDVFYKPHNESFES 186
KA K + + L ER L C I LN+QY MHP L E S++FY+ S ++
Sbjct: 610 -KAAKAGLNQSLFERLVILG------CSPIRLNVQYRMHPCLSEFPSNMFYEG---SLQN 659
Query: 187 PLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADG-SYYRESEITAIKECLDLFM 245
+ + V+D+ + W ++ E+ +A G SY +E T +++ + F
Sbjct: 660 GVSAFDRLRRDVDFPWPVVDSPMMFWSNL--GNEEISASGTSYLNRTEATNVEKIVTRFF 717
Query: 246 K-DEPDFTFGVITFFSEQKRLLEQALKG--------YANLEIGTVDSFQGKEFDVVFLSS 296
K G+IT + Q+ + +++ Y +E+ +VD+FQG+E D + LS
Sbjct: 718 KAGVQPADIGIITPYEGQRSYIVSSMQANGTFKKEHYKEIEVASVDAFQGREKDFIILSC 777
Query: 297 VRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
VR+ +G GFL L VAL+R K L++ G+
Sbjct: 778 VRSNDHQGIGFLSDPRRLNVALTRAKYGLVILGN 811
>sp|Q9HEH1|RNT1_NEUCR Regulator of nonsense transcripts 1 homolog
emb|CAC18314.1| (AL451022) probable nonsense-mediated mRNA decay protein
[Neurospora crassa]
Length = 1093
Score = 90.1 bits (222), Expect = 4e-17
Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 37/273 (13%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F +V++DE+ ++ E ++ + L ++++LVGD +QL + ++
Sbjct: 615 FRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNK---------------- 658
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
KA K + + L ER KL+ I L +QY MHP L E S++FY+ S ++
Sbjct: 659 -KAAKAGLNQSLFERLVKLQFTP-----IRLKVQYRMHPCLSEFPSNMFYEG---SLQNG 709
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADG-SYYRESEITAIKECLDLFMK 246
+ K V + + W ++ E+ +A G SY +E +++ + F K
Sbjct: 710 VTAAERLRKDVDFPWPVPETPMMFWSNL--GNEEISASGTSYLNRTEAANVEKIVTRFFK 767
Query: 247 -DEPDFTFGVITFFSEQKRLLEQALKG--------YANLEIGTVDSFQGKEFDVVFLSSV 297
GVIT + Q+ + ++ Y +E+ +VD+FQG+E D + LS V
Sbjct: 768 AGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCV 827
Query: 298 RTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
R+ +G GFL L VAL+R K L++ G+
Sbjct: 828 RSNENQGIGFLSDPRRLNVALTRAKYGLVIIGN 860
>ref|NP_070217.1| (NC_000917) DNA helicase, putative [Archaeoglobus fulgidus]
pir||C69423 DNA helicase homolog - Archaeoglobus fulgidus
gb|AAB89860.1| (AE001009) DNA helicase, putative [Archaeoglobus fulgidus]
Length = 648
Score = 89.0 bits (219), Expect = 8e-17
Identities = 85/275 (30%), Positives = 139/275 (49%), Gaps = 43/275 (15%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD+ ++DEA++A +L+ + A+ + IL GD RQLP + +
Sbjct: 371 FDTAVIDEASQATIPSVLIPINRAR-KFILAGDHRQLPPTVM----------------KA 413
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFES- 186
EK L +++F+KL E + +L LN+QY M+ L E S FY + ES
Sbjct: 414 EK-LSETLFEKLIELYPEKSQL--------LNVQYRMNEKLMEFPSREFYGGRIVAHESC 464
Query: 187 -PLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESK---EKRNADGS--YYR-ESEITA--I 237
+ + ++ + +L ++PL +ID + K E + AD + Y R E+EI +
Sbjct: 465 TAIALSQIAKREAEKLREILGDEPLVFIDTSKCKNRWEGKLADSTSRYNRLEAEIVTEIV 524
Query: 238 KECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVFLSSV 297
E L + +K E GVIT + +Q LL + + ++E+ +VD FQG+E +V+ +S V
Sbjct: 525 TELLKMGLKKEQ---IGVITPYDDQVDLLREKV----DVEVSSVDGFQGREKEVIIISFV 577
Query: 298 RTRHTEGFGFLKISSCLCVALSRQKRALIVAGDRE 332
R+ GFL L V+L+R +R LI+ GD E
Sbjct: 578 RSNRKREIGFLDDLRRLNVSLTRARRKLIMVGDSE 612
>ref|NP_593080.1| (NC_003424) putative regulator of nonsense transcript stability
[Schizosaccharomyces pombe]
sp|Q09820|RNT1_SCHPO Regulator of nonsense transcripts 1 homolog
pir||T37779 probable regulator of nonsense transcript stability - fission yeast
(Schizosaccharomyces pombe)
emb|CAA91194.2| (Z54366) putative regulator of nonsense transcript stability
[Schizosaccharomyces pombe]
Length = 925
Score = 89.0 bits (219), Expect = 8e-17
Identities = 89/356 (25%), Positives = 171/356 (48%), Gaps = 59/356 (16%)
Query: 17 NDKRIRVLLEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEA 76
++K++R+L ++ E+ LLR + + G ++ + + + F SV++DEA
Sbjct: 519 DEKKLRIL---VAAAEK------ELLRAAHVICCTCVGAGDRRISKYK---FRSVLIDEA 566
Query: 77 AKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMF 136
+A+ E ++ + L ++++LVGD +QL + + KK+ S L S+F
Sbjct: 567 TQASEPECMIPLVLGAKQVVLVGDHQQLGPVV---MNKKVALAS----------LSQSLF 613
Query: 137 KKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKP--HNESFESPLKGKHLE 194
++L + G F L +QY MHP L E S+ FY+ N S +H++
Sbjct: 614 ERLI--------ILGNSPF-RLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVD 664
Query: 195 EKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDE--PDFT 252
P+ + + PL + +E + S+ +E + ++ + F++ P+
Sbjct: 665 F-PW-----IQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPE-Q 717
Query: 253 FGVITFFSEQKRLLEQALKG--------YANLEIGTVDSFQGKEFDVVFLSSVRTRHTEG 304
G++T + Q+ + Q ++ Y +E+ +VD+FQG+E D + LS VR+ +G
Sbjct: 718 IGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQG 777
Query: 305 FGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEGKIL 360
GF+ L VAL+R K +IV G+ P+ K + + F+ CK++G ++
Sbjct: 778 IGFVNDPRRLNVALTRAKYGVIVLGN------PKVLAKHALWYHFVLHCKEKGYLV 827
>sp|Q92900|RNT1_HUMAN Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor
1) (NORF1) (Up-frameshift suppressor 1 homolog)
Length = 1129
Score = 89.0 bits (219), Expect = 8e-17
Identities = 85/303 (28%), Positives = 140/303 (46%), Gaps = 44/303 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F S+++DE+ +A E ++ + L +++ILVGD QL +
Sbjct: 641 FRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV-----------------MC 683
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA K + + L ER L I L +QY MHP L S++FY+ S ++
Sbjct: 684 KKAAKAGLSQSLFERLVVLGIRP-----IRLQVQYRMHPALSAFPSNIFYEG---SLQNG 735
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKD 247
+ +K F D KP+ + + +E ++ SY +E +++ +K
Sbjct: 736 VTAADRVKKGFDFQWPQPD-KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 794
Query: 248 --EPDFTFGVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSSV 297
+PD G+IT + Q+ L Q + K Y +EI +VD+FQG+E D + LS V
Sbjct: 795 GAKPD-QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV 853
Query: 298 RTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEG 357
R +G GFL L VAL+R + +I+ G+ P++ K L+ L + KE
Sbjct: 854 RANEHQGIGFLNDPRRLNVALTRARYGVIIVGN------PKALSK-QPLWNHLLNYYKEQ 906
Query: 358 KIL 360
K+L
Sbjct: 907 KVL 909
>dbj|BAA19664.1| (D86988) KIAA0221 [Homo sapiens]
Length = 1129
Score = 89.0 bits (219), Expect = 8e-17
Identities = 85/303 (28%), Positives = 140/303 (46%), Gaps = 44/303 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F S+++DE+ +A E ++ + L +++ILVGD QL +
Sbjct: 641 FRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV-----------------MC 683
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA K + + L ER L I L +QY MHP L S++FY+ S ++
Sbjct: 684 KKAAKAGLSQSLFERLVVLGIRP-----IRLQVQYRMHPALSAFPSNIFYEG---SLQNG 735
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKD 247
+ +K F D KP+ + + +E ++ SY +E +++ +K
Sbjct: 736 VTAADRVKKGFDFQWPQPD-KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 794
Query: 248 --EPDFTFGVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSSV 297
+PD G+IT + Q+ L Q + K Y +EI +VD+FQG+E D + LS V
Sbjct: 795 GAKPD-QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV 853
Query: 298 RTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEG 357
R +G GFL L VAL+R + +I+ G+ P++ K L+ L + KE
Sbjct: 854 RANEHQGIGFLNDPRRLNVALTRARYGVIIVGN------PKALSK-QPLWNHLLNYYKEQ 906
Query: 358 KIL 360
K+L
Sbjct: 907 KVL 909
>pir||S62476 hypothetical protein SPAC16C9.06c - fission yeast
(Schizosaccharomyces pombe)
Length = 935
Score = 89.0 bits (219), Expect = 8e-17
Identities = 89/356 (25%), Positives = 171/356 (48%), Gaps = 59/356 (16%)
Query: 17 NDKRIRVLLEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEA 76
++K++R+L ++ E+ LLR + + G ++ + + + F SV++DEA
Sbjct: 529 DEKKLRIL---VAAAEK------ELLRAAHVICCTCVGAGDRRISKYK---FRSVLIDEA 576
Query: 77 AKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMF 136
+A+ E ++ + L ++++LVGD +QL + + KK+ S L S+F
Sbjct: 577 TQASEPECMIPLVLGAKQVVLVGDHQQLGPVV---MNKKVALAS----------LSQSLF 623
Query: 137 KKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKP--HNESFESPLKGKHLE 194
++L + G F L +QY MHP L E S+ FY+ N S +H++
Sbjct: 624 ERLI--------ILGNSPF-RLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVD 674
Query: 195 EKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDE--PDFT 252
P+ + + PL + +E + S+ +E + ++ + F++ P+
Sbjct: 675 F-PW-----IQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPE-Q 727
Query: 253 FGVITFFSEQKRLLEQALKG--------YANLEIGTVDSFQGKEFDVVFLSSVRTRHTEG 304
G++T + Q+ + Q ++ Y +E+ +VD+FQG+E D + LS VR+ +G
Sbjct: 728 IGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQG 787
Query: 305 FGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEGKIL 360
GF+ L VAL+R K +IV G+ P+ K + + F+ CK++G ++
Sbjct: 788 IGFVNDPRRLNVALTRAKYGVIVLGN------PKVLAKHALWYHFVLHCKEKGYLV 837
>gb|AAC51140.1| (U59323) type 1 RNA helicase pNORF1 [Homo sapiens]
Length = 1118
Score = 89.0 bits (219), Expect = 8e-17
Identities = 85/303 (28%), Positives = 140/303 (46%), Gaps = 44/303 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F S+++DE+ +A E ++ + L +++ILVGD QL +
Sbjct: 630 FRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV-----------------MC 672
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA K + + L ER L I L +QY MHP L S++FY+ S ++
Sbjct: 673 KKAAKAGLSQSLFERLVVLGIRP-----IRLQVQYRMHPALSAFPSNIFYEG---SLQNG 724
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKD 247
+ +K F D KP+ + + +E ++ SY +E +++ +K
Sbjct: 725 VTAADRVKKGFDFQWPQPD-KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 783
Query: 248 --EPDFTFGVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSSV 297
+PD G+IT + Q+ L Q + K Y +EI +VD+FQG+E D + LS V
Sbjct: 784 GAKPD-QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV 842
Query: 298 RTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEG 357
R +G GFL L VAL+R + +I+ G+ P++ K L+ L + KE
Sbjct: 843 RANEHQGIGFLNDPRRLNVALTRARYGVIIVGN------PKALSK-QPLWNHLLNYYKEQ 895
Query: 358 KIL 360
K+L
Sbjct: 896 KVL 898
>ref|NP_002902.2| (NM_002911) regulator of nonsense transcripts 1; up-frameshift
mutation 1 homolog (S. cerevisiae); nonsense mRNA
reducing factor 1; yeast Upf1p homolog; up-frameshift
suppressor 1 homolog (S. cerevisiae) [Homo sapiens]
gb|AAB94785.1| (AC003972) pNORF1 [Homo sapiens]
gb|AAC26788.1| (AF074016) nonsense-mediated mRNA decay trans-acting factor [Homo
sapiens]
Length = 1118
Score = 89.0 bits (219), Expect = 8e-17
Identities = 85/303 (28%), Positives = 140/303 (46%), Gaps = 44/303 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F S+++DE+ +A E ++ + L +++ILVGD QL +
Sbjct: 630 FRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV-----------------MC 672
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA K + + L ER L I L +QY MHP L S++FY+ S ++
Sbjct: 673 KKAAKAGLSQSLFERLVVLGIRP-----IRLQVQYRMHPALSAFPSNIFYEG---SLQNG 724
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKD 247
+ +K F D KP+ + + +E ++ SY +E +++ +K
Sbjct: 725 VTAADRVKKGFDFQWPQPD-KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 783
Query: 248 --EPDFTFGVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSSV 297
+PD G+IT + Q+ L Q + K Y +EI +VD+FQG+E D + LS V
Sbjct: 784 GAKPD-QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV 842
Query: 298 RTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEG 357
R +G GFL L VAL+R + +I+ G+ P++ K L+ L + KE
Sbjct: 843 RANEHQGIGFLNDPRRLNVALTRARYGVIIVGN------PKALSK-QPLWNHLLNYYKEQ 895
Query: 358 KIL 360
K+L
Sbjct: 896 KVL 898
>ref|XP_125045.1| (XM_125045) similar to Regulator of nonsense transcripts 1
(Nonsense mRNA reducing factor 1) (NORF1) (Up-frameshift
suppressor 1 homolog) [Mus musculus]
sp|Q9EPU0|RNT1_MOUSE Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor
1) (NORF1) (Up-frameshift suppressor 1 homolog)
gb|AAG42830.1|AF322655_1 (AF322655) regulator of nonsense transcripts 1 [Mus musculus]
Length = 1113
Score = 88.6 bits (218), Expect = 1e-16
Identities = 86/303 (28%), Positives = 139/303 (45%), Gaps = 44/303 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F S+++DE+ +A E ++ + L +++ILVGD QL +
Sbjct: 625 FRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV-----------------MC 667
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA K + + L ER L I L +QY MHP L S++FY+ S ++
Sbjct: 668 KKAAKAGLSQSLFERLVVLGIRP-----IRLQVQYRMHPALSAFPSNIFYEG---SLQNG 719
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKD 247
+ +K F D KP+ + + +E ++ SY +E +++ +K
Sbjct: 720 VTAADRVKKGFDFQWPQPD-KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 778
Query: 248 --EPDFTFGVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSSV 297
+PD G+IT + Q+ L Q + K Y +EI +VD+FQG+E D + LS V
Sbjct: 779 GAKPD-QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV 837
Query: 298 RTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEG 357
R +G GFL L VAL+R + +I+ G+ P++ K L+ L S KE
Sbjct: 838 RANEHQGIGFLNDPRRLNVALTRARYGVIIVGN------PKALSK-QPLWNHLLSYYKEQ 890
Query: 358 KIL 360
K L
Sbjct: 891 KAL 893
>ref|NP_109605.1| (NM_030680) regulator of nonsense transcripts 1; nonsense mRNA
reducing factor 1 [Mus musculus]
gb|AAK08652.1|AF182947_1 (AF182947) nonsense mRNA reducing factor 1 NORF1 [Mus musculus]
Length = 1113
Score = 88.6 bits (218), Expect = 1e-16
Identities = 86/303 (28%), Positives = 139/303 (45%), Gaps = 44/303 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F S+++DE+ +A E ++ + L +++ILVGD QL +
Sbjct: 625 FRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV-----------------MC 667
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA K + + L ER L I L +QY MHP L S++FY+ S ++
Sbjct: 668 KKAAKAGLSQSLFERLVVLGIRP-----IRLQVQYRMHPALSAFPSNIFYEG---SLQNG 719
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKD 247
+ +K F D KP+ + + +E ++ SY +E +++ +K
Sbjct: 720 VTAADRVKKGFDFQWPQPD-KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 778
Query: 248 --EPDFTFGVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSSV 297
+PD G+IT + Q+ L Q + K Y +EI +VD+FQG+E D + LS V
Sbjct: 779 GAKPD-QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV 837
Query: 298 RTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEG 357
R +G GFL L VAL+R + +I+ G+ P++ K L+ L S KE
Sbjct: 838 RANEHQGIGFLNDPRRLNVALTRARYGVIIVGN------PKALSK-QPLWNHLLSYYKEQ 890
Query: 358 KIL 360
K L
Sbjct: 891 KAL 893
>gb|AAH30916.1| (BC030916) Unknown (protein for IMAGE:4511355) [Mus musculus]
Length = 543
Score = 88.6 bits (218), Expect = 1e-16
Identities = 86/303 (28%), Positives = 139/303 (45%), Gaps = 44/303 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F S+++DE+ +A E ++ + L +++ILVGD QL +
Sbjct: 55 FRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV-----------------MC 97
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA K + + L ER L I L +QY MHP L S++FY+ S ++
Sbjct: 98 KKAAKAGLSQSLFERLVVLGIRP-----IRLQVQYRMHPALSAFPSNIFYEG---SLQNG 149
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKD 247
+ +K F D KP+ + + +E ++ SY +E +++ +K
Sbjct: 150 VTAADRVKKGFDFQWPQPD-KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 208
Query: 248 --EPDFTFGVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSSV 297
+PD G+IT + Q+ L Q + K Y +EI +VD+FQG+E D + LS V
Sbjct: 209 GAKPD-QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV 267
Query: 298 RTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEG 357
R +G GFL L VAL+R + +I+ G+ P++ K L+ L S KE
Sbjct: 268 RANEHQGIGFLNDPRRLNVALTRARYGVIIVGN------PKALSK-QPLWNHLLSYYKEQ 320
Query: 358 KIL 360
K L
Sbjct: 321 KAL 323
>ref|NP_173124.1| (NM_101541) hypothetical protein [Arabidopsis thaliana]
Length = 1939
Score = 88.2 bits (217), Expect = 1e-16
Identities = 87/290 (30%), Positives = 127/290 (43%), Gaps = 54/290 (18%)
Query: 64 ETPYFDSVIVDEAAKANPLELLMVMALAKER---IILVGDDRQLPHYLDDEIGKKLEDES 120
E FD+V++DEAA+A L+ + L K R I+VGD +QLP + + K E
Sbjct: 1425 EDNLFDAVVIDEAAQALEPATLIPLQLLKSRGTKCIMVGDPKQLPATVLSNVASKFLYEC 1484
Query: 121 QDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPH 180
SMF++L+ + + L QY MHP + S FY
Sbjct: 1485 -------------SMFERLQRAGYPI---------LMLTQQYRMHPEICRFPSMHFYD-- 1520
Query: 181 NESFESPLKGKHLEEK--PFKHNLRVLDNKPLAWIDVKESKEKRNADGSYY-RESEITAI 237
L G + K PF N + P + D+ + +E R+ D S E E A
Sbjct: 1521 ----NKLLNGVDMSSKSAPFHENHHL---GPYVFYDIVDGQEHRSGDSSSVCNEQEAEAA 1573
Query: 238 KECLDLFMKDEP-DFT---FGVITFFSEQKRLLEQALKGY------ANLEIGTVDSFQGK 287
+ L F K P +F G+IT + Q +L G A++E+ TVD FQGK
Sbjct: 1574 VQLLRFFKKRYPSEFVAGRIGIITPYKRQLAVLRSRFTGAFGAQVTADMEMNTVDGFQGK 1633
Query: 288 EFDVVFLSSVRTRHT-------EGFGFLKISSCLCVALSRQKRALIVAGD 330
E D++ LS+VR H+ GF+ + VAL+R K +L V G+
Sbjct: 1634 EVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRAKLSLWVLGN 1683
>gb|AAG09081.1|AC026237_2 (AC026237) Similar to tRNA-splicing endonuclease positive effector
SEN1 [Arabidopsis thaliana]
Length = 2142
Score = 88.2 bits (217), Expect = 1e-16
Identities = 87/290 (30%), Positives = 127/290 (43%), Gaps = 54/290 (18%)
Query: 64 ETPYFDSVIVDEAAKANPLELLMVMALAKER---IILVGDDRQLPHYLDDEIGKKLEDES 120
E FD+V++DEAA+A L+ + L K R I+VGD +QLP + + K E
Sbjct: 1519 EDNLFDAVVIDEAAQALEPATLIPLQLLKSRGTKCIMVGDPKQLPATVLSNVASKFLYEC 1578
Query: 121 QDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPH 180
SMF++L+ + + L QY MHP + S FY
Sbjct: 1579 -------------SMFERLQRAGYPI---------LMLTQQYRMHPEICRFPSMHFYD-- 1614
Query: 181 NESFESPLKGKHLEEK--PFKHNLRVLDNKPLAWIDVKESKEKRNADGSYY-RESEITAI 237
L G + K PF N + P + D+ + +E R+ D S E E A
Sbjct: 1615 ----NKLLNGVDMSSKSAPFHENHHL---GPYVFYDIVDGQEHRSGDSSSVCNEQEAEAA 1667
Query: 238 KECLDLFMKDEP-DFT---FGVITFFSEQKRLLEQALKGY------ANLEIGTVDSFQGK 287
+ L F K P +F G+IT + Q +L G A++E+ TVD FQGK
Sbjct: 1668 VQLLRFFKKRYPSEFVAGRIGIITPYKRQLAVLRSRFTGAFGAQVTADMEMNTVDGFQGK 1727
Query: 288 EFDVVFLSSVRTRHT-------EGFGFLKISSCLCVALSRQKRALIVAGD 330
E D++ LS+VR H+ GF+ + VAL+R K +L V G+
Sbjct: 1728 EVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRAKLSLWVLGN 1777
>gb|AAC50771.1| (U65533) regulator of nonsense transcript stability [Homo sapiens]
Length = 1118
Score = 87.8 bits (216), Expect = 2e-16
Identities = 85/303 (28%), Positives = 139/303 (45%), Gaps = 44/303 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F S+++DE+ +A E ++ + L +++ILVGD QL +
Sbjct: 630 FRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV-----------------MC 672
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA K + + L ER L I L +QY MHP L S++FY+ S ++
Sbjct: 673 KKAAKAGLSQSLFERLVVLGIRP-----IRLQVQYRMHPALSAFPSNIFYEG---SLQNG 724
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKD 247
+ +K F D KP+ + + +E ++ SY +E +++ +K
Sbjct: 725 VTAADRVKKGFDFQWPQPD-KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 783
Query: 248 --EPDFTFGVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSSV 297
+PD G+IT + Q+ L Q + K Y +EI +VD+FQG+E D + LS V
Sbjct: 784 GAKPD-QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV 842
Query: 298 RTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEG 357
R +G GFL L VAL+R + +I+ G+ P++ K L+ L KE
Sbjct: 843 RANEHQGIGFLNDPRRLNVALTRARYGVIIVGN------PKALSK-QPLWNHLLIFYKEQ 895
Query: 358 KIL 360
K+L
Sbjct: 896 KVL 898
>gb|EAA01007.1| (AAAB01008987) ebiP4153 [Anopheles gambiae str. PEST]
Length = 1120
Score = 87.8 bits (216), Expect = 2e-16
Identities = 76/274 (27%), Positives = 132/274 (47%), Gaps = 40/274 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F+S+++DE+ ++ E ++ + L +++ILVGD QL +
Sbjct: 641 FNSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVV-----------------MC 683
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA K + + L ER L G F L +QY MHP L + S+ FY+ ++
Sbjct: 684 KKAAKAGLSQSLFERLVAL----GIRPF-RLEVQYRMHPELSQFPSNFFYEGSLQN---- 734
Query: 188 LKGKHLEEKPFKHNLR-VLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMK 246
G +E+ K + + P+ ++ + +E + SY +E + +++ F+K
Sbjct: 735 --GVCADERKLKVDFPWPSPDCPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLK 792
Query: 247 D--EPDFTFGVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSS 296
+PD G+IT + Q+ L Q + K Y +EI +VD+FQG+E D++ +S
Sbjct: 793 AGIKPD-QIGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSC 851
Query: 297 VRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
VR +G GFL L VAL+R K +I+ G+
Sbjct: 852 VRANEHQGIGFLNDPRRLNVALTRAKYGIIIVGN 885
>gb|AAL31652.1|AC079179_7 (AC079179) Putative DNA2-NAM7 helicase family protein [Oryza sativa]
Length = 1468
Score = 87.0 bits (214), Expect = 3e-16
Identities = 87/304 (28%), Positives = 141/304 (45%), Gaps = 44/304 (14%)
Query: 40 SLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVG 99
S + VF+ T + L + + FD V++DEAA+A+ + +L ++L R +LVG
Sbjct: 963 SFANEAEIVFT-TVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVG 1021
Query: 100 DDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMF-KKLKERAQKLKELDGKECFITL 158
D +QLP + I KA M+ + L ER Q L G I L
Sbjct: 1022 DPQQLPATV------------------ISKAAGTLMYSRSLFERFQ----LSGCPT-ILL 1058
Query: 159 NMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKES 218
++QY MHP + E S FY+ ES +K L ++ + + + P + D+
Sbjct: 1059 SVQYRMHPQIREFPSRHFYQGRLTDSESVVK---LPDEAYYRDALM---APYIFYDISHG 1112
Query: 219 KEKRNADGSYYRESE----ITAIKECLDLFMKDE--PDFTFGVITFFSEQKRLLEQALKG 272
+E S Y+ + + E L F++ + G+IT + Q + L++ +
Sbjct: 1113 RESHRGGSSSYQNVHEAQFVLRLYENLQKFLRANGGKKASVGIITPYKLQLKCLQREFEE 1172
Query: 273 YANLE------IGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALI 326
+ E I TVD+FQG+E DV+ +S VR + G GF+ + VAL+R +RAL
Sbjct: 1173 VMSTEDGKDIYINTVDAFQGQERDVIIMSCVRASN-HGVGFVADIRRMNVALTRARRALW 1231
Query: 327 VAGD 330
V G+
Sbjct: 1232 VVGN 1235
>ref|NP_247068.1| (NC_000909) DNA-binding protein, probably DNA helicase
[Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
sp|Q57568|Y104_METJA Hypothetical ATP-binding protein MJ0104
pir||H64312 probable DNA helicase MJ0104 - Methanococcus jannaschii
gb|AAB98084.1| (U67467) DNA-binding protein, probably DNA helicase [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
Length = 663
Score = 85.5 bits (210), Expect = 9e-16
Identities = 79/297 (26%), Positives = 145/297 (48%), Gaps = 40/297 (13%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD +++DE ++A L+ + + ++I+ GD +QLP + E +E+
Sbjct: 395 FDVIVIDEGSQAMEPSCLIPIVKGR-KLIMAGDHKQLPPTVLSE------------NEEL 441
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFES- 186
+K L + + KK E + L +QY M+ + E + +FY ++ ES
Sbjct: 442 KKTLFERLIKKYPEFSS------------ILEIQYRMNEKIMEFPNKMFYNNKLKADESV 489
Query: 187 ---PLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDL 243
L EE+ + + +++ P+ +I+V+ + K SYY E + E +
Sbjct: 490 KNITLLDLVKEEEIDEVDRDIINEIPVQFINVEGIERKDKESPSYYNIEEAEKVLEIVKK 549
Query: 244 FMKDEPDFTFGVITFFSEQKRLLEQALKGY-ANLEIGTVDSFQGKEFDVVFLSSVRTRHT 302
+K + VIT + Q R L + + + ++E+ TVD FQG+E + + +S VRT++
Sbjct: 550 LVKYK--IPTNVITPYDAQVRYLRRLFEEHNIDIEVNTVDGFQGRENEAIVISFVRTKN- 606
Query: 303 EGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKV-SGLFEFLQSCKKEGK 358
FGFLK L VA++R KR LI+ G+ +DKV + + ++ +S ++E K
Sbjct: 607 --FGFLKDLRRLNVAITRAKRKLILIGNENLL----KQDKVYNEMIKWAKSVEEEHK 657
>ref|NP_227821.1| (NC_000853) DNA helicase, putative [Thermotoga maritima]
pir||G72429 hypothetical protein TM0005 - Thermotoga maritima (strain MSB8)
gb|AAD35099.1|AE001689_5 (AE001689) DNA helicase, putative [Thermotoga maritima]
Length = 650
Score = 84.7 bits (208), Expect = 1e-15
Identities = 87/302 (28%), Positives = 147/302 (47%), Gaps = 42/302 (13%)
Query: 41 LLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGD 100
++R+ V S + + ALE FD V+VDEA++A +L+ ++ K + +L GD
Sbjct: 353 IVREAQVVLSTNS---SAALEILSGIVFDVVVVDEASQATIPSILIPISKGK-KFVLAGD 408
Query: 101 DRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNM 160
+QLP + S+DA+D L ++F++L R + L L+
Sbjct: 409 HKQLPPTI----------LSEDAKD-----LSRTLFEELITRYPEKSSL--------LDT 445
Query: 161 QYGMHPLLGELVSDVFYKPHNESFESPLK------GKHLEEKPFKHNLRVLDNKPLAWID 214
QY M+ LL E S+ FY ++ E G + ++ + L +ID
Sbjct: 446 QYRMNELLMEFPSEEFYDGKLKAAEKVRNITLFDLGVEIPNFGKFWDVVLSPKNVLVFID 505
Query: 215 VKESKEK--RNADGSYYRESEITA--IKECLD--LFMKDEPDFTFGVITFFSEQKRLLEQ 268
K ++ R S RE+ + A +KE ++ L M + D+ G+IT + +Q L+ +
Sbjct: 506 TKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDW-IGIITPYDDQVNLIRE 564
Query: 269 ALKGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVA 328
++ A +E+ +VD FQG+E +V+ +S VR+ GFL+ L V+L+R KR LI
Sbjct: 565 LIE--AKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLTRAKRKLIAT 622
Query: 329 GD 330
GD
Sbjct: 623 GD 624
>ref|NP_613357.1| (NC_003551) Superfamily I DNA/RNA helicase [Methanopyrus kandleri
AV19]
gb|AAM01287.1| (AE010306) Superfamily I DNA/RNA helicase [Methanopyrus kandleri
AV19]
Length = 698
Score = 84.3 bits (207), Expect = 2e-15
Identities = 85/296 (28%), Positives = 136/296 (45%), Gaps = 44/296 (14%)
Query: 53 TGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEI 112
T + LE E FD +VDE ++A L+ ++ AK R I+ GD +QLP +
Sbjct: 381 TTNASAGLEFLEDIEFDVAVVDEGSQATEPSALIPISRAK-RFIMAGDHKQLPPTI---- 435
Query: 113 GKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELV 172
S++AQ E+ + L F++L E+ KL + L +QY MH + E
Sbjct: 436 ------LSEEAQPELSRTL----FERLIEKHPKLSRM--------LRVQYRMHENIMEFP 477
Query: 173 SDVFYKPHNESFESPLKGKHLEE---------KPFKHNLRVLDNKPLAWIDVKESKEK-- 221
+ FY E+ S ++ LE+ +P+ L +PL ++D E+
Sbjct: 478 NREFYNGKLEAHSS-VRRHTLEDLGVGDPEVGRPWADVLH--PKEPLGFVDTSRLPERLR 534
Query: 222 --RNADGSYYRESEITAIKECL---DLFMKDEPDFTFGVITFFSEQKRLLEQALK--GYA 274
R GS RE+ + A L + VI+ + +Q L+ ++L G
Sbjct: 535 RERRRPGSKSRENPMEAAIVAFLSEQLVRQGLSQEDLAVISPYDDQVDLISKSLDELGLG 594
Query: 275 NLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
++E+ TVD FQG+E + V +S VR+ GFL+ L VA++R +R LI GD
Sbjct: 595 DVEVNTVDGFQGREKEAVIVSFVRSNPKGEVGFLRDMRRLNVAITRPRRKLICIGD 650
>dbj|BAA31600.1| (AB014525) KIAA0625 protein [Homo sapiens]
Length = 791
Score = 84.0 bits (206), Expect = 3e-15
Identities = 80/279 (28%), Positives = 126/279 (44%), Gaps = 47/279 (16%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F VIVDEA ++ +E L + ++ILVGD +QLP + I K ++ D
Sbjct: 289 FSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTV---ISMKAQEYGYD----- 340
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+++ + L+E + + + + L +QY MHP D+ P N +
Sbjct: 341 -QSMMARFCRLLEENVE--HNMISRLPILQLTVQYRMHP-------DICLFPSNYVYNRN 390
Query: 188 LKGKHLEEK-------PFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKEC 240
LK E PF +P DV + E+R+ D SY EI + E
Sbjct: 391 LKTNRQTEAIRCSSDWPF---------QPYLVFDVGDGSERRDND-SYINVQEIKLVMEI 440
Query: 241 LDLFMKDEPDFTF---GVITFFSEQKRLLEQAL------KGYANLEIGTVDSFQGKEFDV 291
+ L D +F G+IT + QK ++++ L KG A E+ TVD+FQG++ D
Sbjct: 441 IKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPA--EVDTVDAFQGRQKDC 498
Query: 292 VFLSSVRTRHTEG-FGFLKISSCLCVALSRQKRALIVAG 329
V ++ VR +G GFL L V ++R K +L + G
Sbjct: 499 VIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILG 537
>ref|NP_055861.1| (NM_015046) KIAA0625 protein [Homo sapiens]
dbj|BAA91701.1| (AK001456) unnamed protein product [Homo sapiens]
gb|AAH32600.1| (BC032600) KIAA0625 protein [Homo sapiens]
Length = 828
Score = 84.0 bits (206), Expect = 3e-15
Identities = 80/279 (28%), Positives = 126/279 (44%), Gaps = 47/279 (16%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F VIVDEA ++ +E L + ++ILVGD +QLP + I K ++ D
Sbjct: 326 FSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTV---ISMKAQEYGYD----- 377
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+++ + L+E + + + + L +QY MHP D+ P N +
Sbjct: 378 -QSMMARFCRLLEENVE--HNMISRLPILQLTVQYRMHP-------DICLFPSNYVYNRN 427
Query: 188 LKGKHLEEK-------PFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKEC 240
LK E PF +P DV + E+R+ D SY EI + E
Sbjct: 428 LKTNRQTEAIRCSSDWPF---------QPYLVFDVGDGSERRDND-SYINVQEIKLVMEI 477
Query: 241 LDLFMKDEPDFTF---GVITFFSEQKRLLEQAL------KGYANLEIGTVDSFQGKEFDV 291
+ L D +F G+IT + QK ++++ L KG A E+ TVD+FQG++ D
Sbjct: 478 IKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPA--EVDTVDAFQGRQKDC 535
Query: 292 VFLSSVRTRHTEG-FGFLKISSCLCVALSRQKRALIVAG 329
V ++ VR +G GFL L V ++R K +L + G
Sbjct: 536 VIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILG 574
>emb|CAD13341.1| (AL159997) bA479K20.2 (KIAA0625 protein) [Homo sapiens]
Length = 915
Score = 84.0 bits (206), Expect = 3e-15
Identities = 80/279 (28%), Positives = 126/279 (44%), Gaps = 47/279 (16%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F VIVDEA ++ +E L + ++ILVGD +QLP + I K ++ D
Sbjct: 413 FSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTV---ISMKAQEYGYD----- 464
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+++ + L+E + + + + L +QY MHP D+ P N +
Sbjct: 465 -QSMMARFCRLLEENVE--HNMISRLPILQLTVQYRMHP-------DICLFPSNYVYNRN 514
Query: 188 LKGKHLEEK-------PFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKEC 240
LK E PF +P DV + E+R+ D SY EI + E
Sbjct: 515 LKTNRQTEAIRCSSDWPF---------QPYLVFDVGDGSERRDND-SYINVQEIKLVMEI 564
Query: 241 LDLFMKDEPDFTF---GVITFFSEQKRLLEQAL------KGYANLEIGTVDSFQGKEFDV 291
+ L D +F G+IT + QK ++++ L KG A E+ TVD+FQG++ D
Sbjct: 565 IKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPA--EVDTVDAFQGRQKDC 622
Query: 292 VFLSSVRTRHTEG-FGFLKISSCLCVALSRQKRALIVAG 329
V ++ VR +G GFL L V ++R K +L + G
Sbjct: 623 VIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILG 661
>gb|AAF50482.1| (AE003556) CG7504 gene product [Drosophila melanogaster]
Length = 1417
Score = 84.0 bits (206), Expect = 3e-15
Identities = 80/286 (27%), Positives = 123/286 (42%), Gaps = 49/286 (17%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDE 126
+FD IVDEA + L+ M ++LVGD +QLP + + KK
Sbjct: 1125 FFDICIVDEATQCTEPWTLLPMRFGLTHMVLVGDMQQLPAVV---LSKKA---------- 1171
Query: 127 IEKALKDSMFKKLKERAQKLKELDGKECFI-----TLNMQYGMHPLLGELVSDVFYKPH- 180
I+ L +SMF +++ Q + G + L+ QY MHP + + FY+
Sbjct: 1172 IDFGLSNSMFDRIQRSLQTQLDKPGSYHLMHTKLFKLSTQYRMHPEICRWPNQYFYEDQL 1231
Query: 181 -----NESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADG-SYYRESEI 234
F SPL P I++K + + A S E
Sbjct: 1232 INAECTARFASPLI-------------------PYCVINLKYTCDSNGAQNKSISNNEEA 1272
Query: 235 TAIKECLDLFMKDEPD--FTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVV 292
+ + L K P F++G+I+ + Q L Q + + N+ TVDS+QG E DV+
Sbjct: 1273 RFVAKLLTEMDKHMPSKRFSYGLISPYQNQCYALSQVIPSHMNITPQTVDSYQGLEKDVI 1332
Query: 293 FLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPE 338
+S+ RTR G GFL L VAL+R +R L++ G+ E + E
Sbjct: 1333 IISNARTR---GCGFLTNYQRLNVALTRPRRCLVICGNFEDLKSVE 1375
>ref|NP_578301.1| (NC_003413) dna2-nam7 helicase family protein [Pyrococcus furiosus
DSM 3638]
gb|AAL80696.1| (AE010180) dna2-nam7 helicase family protein [Pyrococcus furiosus
DSM 3638]
Length = 655
Score = 83.6 bits (205), Expect = 3e-15
Identities = 90/301 (29%), Positives = 145/301 (47%), Gaps = 44/301 (14%)
Query: 53 TGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEI 112
T + AL+ + +D I+DEA +A +L+ + +R IL GD +QLP +
Sbjct: 363 TTNSSAALDVVDATDYDVAIIDEATQATIPSILIPLNKV-DRFILAGDHKQLPPTI---- 417
Query: 113 GKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELV 172
L E+Q+ L ++F+ L E+ E+ L +QY M+ + E
Sbjct: 418 ---LSLEAQE--------LSHTLFEGLIEKYPWKSEM--------LTIQYRMNERIMEFP 458
Query: 173 SDVFYKPHNESFESPLKGKHLEEKPFKHNLR-----VLD-NKPLAWID--VKESKEKRNA 224
S FY + ES +K L + K N +LD N L +ID + E++ +R
Sbjct: 459 SREFYDGRIVADES-VKNITLADLGIKVNASGIWRDILDPNNVLVFIDTCMLENRFERQR 517
Query: 225 DGSYYRESEITA------IKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANLEI 278
GS RE+ + A +++ L+ +K E GVIT + +Q+ L+ +L +E+
Sbjct: 518 RGSESRENPLEAKIVSKIVEKLLESGVKAE---MMGVITPYDDQRDLI--SLNVPEEVEV 572
Query: 279 GTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPE 338
TVD +QG+E +V+ LS VR+ GFLK L V+L+R KR LI+ GD + E
Sbjct: 573 KTVDGYQGREKEVIILSFVRSNKAGEIGFLKDLRRLNVSLTRAKRKLIMIGDSSTLSSHE 632
Query: 339 S 339
+
Sbjct: 633 T 633
>ref|NP_126913.1| (NC_000868) DNA helicase, putative [Pyrococcus abyssi]
pir||B75105 probable DNA helicas PAB1561 - Pyrococcus abyssi (strain Orsay)
emb|CAB50143.1| (AJ248286) DNA helicase, putative [Pyrococcus abyssi]
Length = 653
Score = 83.6 bits (205), Expect = 3e-15
Identities = 91/310 (29%), Positives = 149/310 (47%), Gaps = 44/310 (14%)
Query: 53 TGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEI 112
T + ALE + +D I+DEA ++ +L+ + ER +L GD +QLP +
Sbjct: 363 TTNSSAALEVVDYDTYDVAIIDEATQSTIPSILIPLNKV-ERFVLAGDHKQLPPTI---- 417
Query: 113 GKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELV 172
L E+Q+ L ++F+ L ER E+ L +QY M+ + E
Sbjct: 418 ---LSLEAQE--------LSRTLFEGLIERYPWKSEM--------LVVQYRMNERIMEFP 458
Query: 173 SDVFYKPHNESFESPLKGKHLEE-----KPFKHNLRVLD-NKPLAWIDVK--ESKEKRNA 224
S FY + ES ++G L + P ++L+ + +ID E+K +R
Sbjct: 459 SKEFYGGKIIADES-VRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQR 517
Query: 225 DGSYYRESEITA------IKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANLEI 278
GS RE+ + A + + L + +K E GVIT + +Q+ L+ ++K ++E+
Sbjct: 518 RGSESRENPLEAEIVAKIVDKLLSIGVKPE---WIGVITPYDDQRDLI--SMKVPEDVEV 572
Query: 279 GTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPE 338
TVD +QG+E +V+ LS VR+ GFLK L V+L+R KR LIV GD + E
Sbjct: 573 KTVDGYQGREKEVIILSLVRSNKLGEIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHE 632
Query: 339 SKDKVSGLFE 348
+ K+ F+
Sbjct: 633 TYKKMIEFFK 642
>ref|NP_572767.1| (NM_132539) CG1559 gene product [Drosophila melanogaster]
gb|AAL28927.1| (AY061379) LD30316p [Drosophila melanogaster]
Length = 1180
Score = 82.4 bits (202), Expect = 7e-15
Identities = 72/274 (26%), Positives = 131/274 (47%), Gaps = 40/274 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F S+++DE+ ++ E ++ + L +++ILVGD QL +
Sbjct: 611 FTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVV-----------------MC 653
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA + + + L ER L G F L +QY MHP L + S+ FY+ ++
Sbjct: 654 KKAARAGLSQSLFERLVVL----GIRPF-RLEVQYRMHPELSQFPSNFFYEGSLQN---- 704
Query: 188 LKGKHLEEKPFKHNLR-VLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMK 246
G E++ K + +P+ ++ + +E + S+ +E +++ F+K
Sbjct: 705 --GVCAEDRRLKLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLK 762
Query: 247 D--EPDFTFGVITFFSEQKRLLEQALKG--------YANLEIGTVDSFQGKEFDVVFLSS 296
+P+ G+IT + Q+ L Q ++ Y +EI +VD+FQG+E D++ +S
Sbjct: 763 AGIKPE-QIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSC 821
Query: 297 VRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
VR+ +G GFL L VAL+R K +I+ G+
Sbjct: 822 VRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGN 855
>ref|NP_013797.1| (NC_001145) Involved in mRNA degradation; Nam7p [Saccharomyces
cerevisiae]
sp|P30771|NAM7_YEAST NAM7 protein ((Nuclear accomodation of mitochondria 7 protein)
Nonsense-mediated mRNA decay protein 1) (Up-frameshift
suppressor 1)
pir||S23408 prematurely terminated mRNA decay factor NAM7 - yeast
(Saccharomyces cerevisiae)
emb|CAA44266.1| (X62394) helicase [Saccharomyces cerevisiae]
gb|AAA35197.1| (M76659) zinc finger protein [Saccharomyces cerevisiae]
emb|CAA89226.1| (Z49259) Nam7p [Saccharomyces cerevisiae]
Length = 971
Score = 81.6 bits (200), Expect = 1e-14
Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 37/298 (12%)
Query: 41 LLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGD 100
+L + V G ++ L+ K F +V++DE+ +A+ E L+ + +++ILVGD
Sbjct: 543 ILNKADVVCCTCVGAGDKRLDTK----FRTVLIDESTQASEPECLIPIVKGAKQVILVGD 598
Query: 101 DRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNM 160
+QL + LE ++ DA LK S+F++L + I L +
Sbjct: 599 HQQLGPVI-------LERKAADA------GLKQSLFERL---------ISLGHVPIRLEV 636
Query: 161 QYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKE 220
QY M+P L E S++FY+ ++ + ++ + + F +R + + W + +
Sbjct: 637 QYRMNPYLSEFPSNMFYEGSLQNGVT-IEQRTVPNSKFPWPIRGIPM--MFWANYGREEI 693
Query: 221 KRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKG-------- 272
N R + + LF GVIT + Q+ + Q ++
Sbjct: 694 SANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDL 753
Query: 273 YANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
Y +E+ +VD+FQG+E D + LS VR + GFL+ L V L+R K L++ G+
Sbjct: 754 YIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGN 811
>ref|NP_194739.1| (NM_119156) putative protein [Arabidopsis thaliana]
pir||T08986 hypothetical protein F6G3.130 - Arabidopsis thaliana
emb|CAB43845.1| (AL078464) putative protein [Arabidopsis thaliana]
emb|CAB81003.1| (AL161576) putative protein [Arabidopsis thaliana]
Length = 1311
Score = 81.3 bits (199), Expect = 2e-14
Identities = 89/315 (28%), Positives = 139/315 (43%), Gaps = 47/315 (14%)
Query: 31 LERTPWDLESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMAL 90
LE LE+ + + T + L + T FD V++DEAA+A+ + +L +AL
Sbjct: 901 LEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLAL 960
Query: 91 AKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMF-KKLKERAQKLKEL 149
R +LVGD +QLP + I KA ++ + L ER Q L
Sbjct: 961 GAARCVLVGDPQQLPATV------------------ISKAAGTLLYSRSLFERFQ----L 998
Query: 150 DGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKP 209
G + L +QY MHP + + S FY+ ES +E +K ++ KP
Sbjct: 999 AGCPTLL-LTVQYRMHPQIRDFPSRYFYQGRLTDSESVSTAP--DEIYYKDSVL----KP 1051
Query: 210 LAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDEPDF--------TFGVITFFSE 261
+ D+ +E Y I + C+ +++ + + GVIT +
Sbjct: 1052 YLFFDISHGRESHRGGSVSY--ENIDEARFCVGVYLHLQRTLKSLGGGKVSVGVITPYKL 1109
Query: 262 QKRLLE----QALK--GYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLC 315
Q + L+ AL + I TVD+FQG+E DV+ +S VR + G GF+ +
Sbjct: 1110 QLKCLKIEFGNALSQDELQEIYINTVDAFQGQERDVIIMSCVRASN-HGVGFVADIRRMN 1168
Query: 316 VALSRQKRALIVAGD 330
VAL+R KRAL V G+
Sbjct: 1169 VALTRAKRALWVMGN 1183
>ref|NP_142832.1| (NC_000961) DNA-binding protein [Pyrococcus horikoshii]
pir||E71080 probable DNA-binding protein - Pyrococcus horikoshii
dbj|BAA30003.1| (AP000004) 656aa long hypothetical DNA-binding protein [Pyrococcus
horikoshii]
Length = 656
Score = 80.9 bits (198), Expect = 2e-14
Identities = 89/301 (29%), Positives = 144/301 (47%), Gaps = 44/301 (14%)
Query: 53 TGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEI 112
T + ALE + +D I+DEA +A +L+ + +R IL GD +QLP +
Sbjct: 363 TTNSSAALEVVDATDYDVAIIDEATQATIPSILIPLNKV-DRFILAGDHKQLPPTI---- 417
Query: 113 GKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELV 172
L E+Q+ L ++F+ L ER E+ L +QY M+ + E
Sbjct: 418 ---LSLEAQE--------LSHTLFEGLIERYPWKSEM--------LTIQYRMNERIMEFP 458
Query: 173 SDVFYKPHNESFESPLKGKHLEEKPFKHNLR-----VLD-NKPLAWID--VKESKEKRNA 224
S FY + E +K L + K N +LD + L +ID + +++ +R
Sbjct: 459 SKEFYDGRIVADER-VKNITLGDLGIKVNATGIWRDILDPSNVLVFIDTCMLDNRFERQR 517
Query: 225 DGSYYRESEITA------IKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANLEI 278
GS RE+ + A +++ L+ +K E GVIT + +Q+ L+ +L +E+
Sbjct: 518 RGSESRENPLEAKIVSKIVEKLLESGVKAE---MIGVITPYDDQRDLI--SLNVPEEVEV 572
Query: 279 GTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPE 338
TVD +QG+E +V+ LS VR+ GFLK L V+L+R KR LI+ GD + E
Sbjct: 573 KTVDGYQGREKEVIILSFVRSNKVGEIGFLKDLRRLNVSLTRAKRKLIMIGDSSTLSSHE 632
Query: 339 S 339
+
Sbjct: 633 T 633
>ref|NP_199512.1| (NM_124072) prematurely terminated mRNA decay factor-like protein
[Arabidopsis thaliana]
sp|Q9FJR0|RNT1_ARATH Regulator of nonsense transcripts 1 homolog
dbj|BAB10240.1| (AB013394) prematurely terminated mRNA decay factor-like protein
[Arabidopsis thaliana]
Length = 1235
Score = 80.9 bits (198), Expect = 2e-14
Identities = 75/274 (27%), Positives = 132/274 (47%), Gaps = 39/274 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F V++DE+ +A E L+ + L ++++LVGD QL +
Sbjct: 647 FRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVI-----------------MC 689
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA + + + L ER L L K I L +QY MHP L E S+ FY+ ++ +
Sbjct: 690 KKAARAGLAQSLFER---LVTLGIKP--IRLQVQYRMHPALSEFPSNSFYEGTLQNGVTI 744
Query: 188 LKGKHLE-EKPFKHNLRVLDNKPLAWIDVKESKEKRNADG-SYYRESEITAIKECLDLFM 245
++ + + P+ + N+P+ + V+ +E+ +A G SY +E +++ + F+
Sbjct: 745 IERQTTGIDFPWP-----VPNRPMFFY-VQLGQEEISASGTSYLNRTEAANVEKLVTAFL 798
Query: 246 KDEP-DFTFGVITFFSEQKRLLEQALKG--------YANLEIGTVDSFQGKEFDVVFLSS 296
K GVIT + Q+ + + Y +E+ +VDSFQG+E D + LS
Sbjct: 799 KSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSC 858
Query: 297 VRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
VR+ +G GFL L VAL+R + +++ G+
Sbjct: 859 VRSNEHQGIGFLNDPRRLNVALTRARYGIVILGN 892
>gb|AAL92018.1| (AF484122) UPF1 [Arabidopsis thaliana]
Length = 1243
Score = 80.9 bits (198), Expect = 2e-14
Identities = 75/274 (27%), Positives = 132/274 (47%), Gaps = 39/274 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F V++DE+ +A E L+ + L ++++LVGD QL +
Sbjct: 639 FRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVI-----------------MC 681
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+KA + + + L ER L L K I L +QY MHP L E S+ FY+ ++ +
Sbjct: 682 KKAARAGLAQSLFER---LVTLGIKP--IRLQVQYRMHPALSEFPSNSFYEGTLQNGVTI 736
Query: 188 LKGKHLE-EKPFKHNLRVLDNKPLAWIDVKESKEKRNADG-SYYRESEITAIKECLDLFM 245
++ + + P+ + N+P+ + V+ +E+ +A G SY +E +++ + F+
Sbjct: 737 IERQTTGIDFPWP-----VPNRPMFFY-VQLGQEEISASGTSYLNRTEAANVEKLVTAFL 790
Query: 246 KDEP-DFTFGVITFFSEQKRLLEQALKG--------YANLEIGTVDSFQGKEFDVVFLSS 296
K GVIT + Q+ + + Y +E+ +VDSFQG+E D + LS
Sbjct: 791 KSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSC 850
Query: 297 VRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
VR+ +G GFL L VAL+R + +++ G+
Sbjct: 851 VRSNEHQGIGFLNDPRRLNVALTRARYGIVILGN 884
>ref|NP_565299.1| (NM_126378) putative helicase [Arabidopsis thaliana]
gb|AAK76494.1| (AY045820) putative helicase [Arabidopsis thaliana]
gb|AAM15033.1| (AC005313) putative helicase [Arabidopsis thaliana]
gb|AAD17447.2| (AC006284) putative helicase [Arabidopsis thaliana]
gb|AAM14300.1| (AY091361) putative helicase [Arabidopsis thaliana]
Length = 639
Score = 80.5 bits (197), Expect = 3e-14
Identities = 102/375 (27%), Positives = 162/375 (43%), Gaps = 67/375 (17%)
Query: 3 LANDLLE--------ILSSQSPNDKR-IRVLLEYISVLERTPWDL--ESLLRDYNFVFSN 51
LAND+ + +L ++ N +R I+ L + ER L ++++ + + +
Sbjct: 290 LANDIRKEMKALNGKLLKAKDKNTRRLIQKELRTLGKEERKRQQLAVSDVIKNADVILTT 349
Query: 52 TTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAK-ERIILVGDDRQLPHYLDD 110
TG + L+ + FD VI+DE A+A LE+ +AL K R IL GD QLP +
Sbjct: 350 LTGALTRKLDNRT---FDLVIIDEGAQA--LEVACWIALLKGSRCILAGDHLQLPPTI-- 402
Query: 111 EIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGE 170
Q A+ E K L ++F ++L +L G E L +QY MH L+
Sbjct: 403 ----------QSAEAE-RKGLGRTLF-------ERLADLYGDEIKSMLTVQYRMHELIMN 444
Query: 171 LVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDN--------KPLAWIDVK--ESKE 220
S Y + S H L L+N L +D + +E
Sbjct: 445 WSSKELYDNKITAHSSVAS----------HMLFDLENVTKSSSTEATLLLVDTAGCDMEE 494
Query: 221 KRNADGSYYRESEI-TAIKECLDLFMKDEPDFTFGVITFFSEQKRLL------EQALKGY 273
K++ + S Y E E A+ L G+IT ++ Q LL E+ LK
Sbjct: 495 KKDEEESTYNEGEAEVAMAHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKLK-- 552
Query: 274 ANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREK 333
++EI TVD FQG+E + + +S VR+ + GFLK + VA++R +R + D E
Sbjct: 553 -DMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSRRQCCIVCDTET 611
Query: 334 FDTPESKDKVSGLFE 348
+ ++ FE
Sbjct: 612 VSSDAFLKRMIEYFE 626
>gb|AAB67523.1| (U21094) Sen1p [Saccharomyces cerevisiae]
Length = 757
Score = 80.5 bits (197), Expect = 3e-14
Identities = 75/275 (27%), Positives = 128/275 (46%), Gaps = 42/275 (15%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD+VI+DEA + L ++ + +R I+VGD QLP + +
Sbjct: 110 FDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSGAASNFK---------- 159
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
S+F ++++ + L++QY MHP + + S FY+ + + P
Sbjct: 160 ---YNQSLFVRMEKNSSPY----------LLDVQYRMHPSISKFPSSEFYQGRLK--DGP 204
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADG-SYYRESEITAIKECLD-LFM 245
G + K H L L P + D+ ++++NA SY EI E +D LF
Sbjct: 205 --GMDILNKRPWHQLEPL--APYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFR 260
Query: 246 K--DEPDFT--FGVITFFSEQKRLLEQALKGY------ANLEIGTVDSFQGKEFDVVFLS 295
K ++ DFT G+I+ + EQ + + + Y +++ T+D FQG+E +++ +S
Sbjct: 261 KFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILIS 320
Query: 296 SVRTRHTE-GFGFLKISSCLCVALSRQKRALIVAG 329
VR T+ GFLK + VAL+R K ++ V G
Sbjct: 321 CVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLG 355
>gb|AAB63976.1| (M74589) SEN1 [Saccharomyces cerevisiae]
Length = 2112
Score = 80.5 bits (197), Expect = 3e-14
Identities = 75/275 (27%), Positives = 128/275 (46%), Gaps = 42/275 (15%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD+VI+DEA + L ++ + +R I+VGD QLP + +
Sbjct: 1465 FDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSGAASNFK---------- 1514
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
S+F ++++ + L++QY MHP + + S FY+ + + P
Sbjct: 1515 ---YNQSLFVRMEKNSSPY----------LLDVQYRMHPSISKFPSSEFYQGRLK--DGP 1559
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADG-SYYRESEITAIKECLD-LFM 245
G + K H L L P + D+ ++++NA SY EI E +D LF
Sbjct: 1560 --GMDILNKRPWHQLEPL--APYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFR 1615
Query: 246 K--DEPDFT--FGVITFFSEQKRLLEQALKGY------ANLEIGTVDSFQGKEFDVVFLS 295
K ++ DFT G+I+ + EQ + + + Y +++ T+D FQG+E +++ +S
Sbjct: 1616 KFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILIS 1675
Query: 296 SVRTRHTE-GFGFLKISSCLCVALSRQKRALIVAG 329
VR T+ GFLK + VAL+R K ++ V G
Sbjct: 1676 CVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLG 1710
>pir||T02699 hypothetical protein T18E12.6 - Arabidopsis thaliana
Length = 635
Score = 80.5 bits (197), Expect = 3e-14
Identities = 102/375 (27%), Positives = 162/375 (43%), Gaps = 67/375 (17%)
Query: 3 LANDLLE--------ILSSQSPNDKR-IRVLLEYISVLERTPWDL--ESLLRDYNFVFSN 51
LAND+ + +L ++ N +R I+ L + ER L ++++ + + +
Sbjct: 286 LANDIRKEMKALNGKLLKAKDKNTRRLIQKELRTLGKEERKRQQLAVSDVIKNADVILTT 345
Query: 52 TTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAK-ERIILVGDDRQLPHYLDD 110
TG + L+ + FD VI+DE A+A LE+ +AL K R IL GD QLP +
Sbjct: 346 LTGALTRKLDNRT---FDLVIIDEGAQA--LEVACWIALLKGSRCILAGDHLQLPPTI-- 398
Query: 111 EIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGE 170
Q A+ E K L ++F ++L +L G E L +QY MH L+
Sbjct: 399 ----------QSAEAE-RKGLGRTLF-------ERLADLYGDEIKSMLTVQYRMHELIMN 440
Query: 171 LVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDN--------KPLAWIDVK--ESKE 220
S Y + S H L L+N L +D + +E
Sbjct: 441 WSSKELYDNKITAHSSVAS----------HMLFDLENVTKSSSTEATLLLVDTAGCDMEE 490
Query: 221 KRNADGSYYRESEI-TAIKECLDLFMKDEPDFTFGVITFFSEQKRLL------EQALKGY 273
K++ + S Y E E A+ L G+IT ++ Q LL E+ LK
Sbjct: 491 KKDEEESTYNEGEAEVAMAHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKLK-- 548
Query: 274 ANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREK 333
++EI TVD FQG+E + + +S VR+ + GFLK + VA++R +R + D E
Sbjct: 549 -DMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSRRQCCIVCDTET 607
Query: 334 FDTPESKDKVSGLFE 348
+ ++ FE
Sbjct: 608 VSSDAFLKRMIEYFE 622
>ref|NP_013534.1| (NC_001144) component of a nuclear-localized tRNA splicing complex;
Sen1p [Saccharomyces cerevisiae]
sp|Q00416|SEN1_YEAST TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR
pir||S53416 SEN1 protein - yeast (Saccharomyces cerevisiae)
gb|AAB67502.1| (U20939) Sen1p [Saccharomyces cerevisiae]
Length = 2231
Score = 80.5 bits (197), Expect = 3e-14
Identities = 75/275 (27%), Positives = 128/275 (46%), Gaps = 42/275 (15%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD+VI+DEA + L ++ + +R I+VGD QLP + +
Sbjct: 1584 FDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSGAASNFK---------- 1633
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
S+F ++++ + L++QY MHP + + S FY+ + + P
Sbjct: 1634 ---YNQSLFVRMEKNSSPY----------LLDVQYRMHPSISKFPSSEFYQGRLK--DGP 1678
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADG-SYYRESEITAIKECLD-LFM 245
G + K H L L P + D+ ++++NA SY EI E +D LF
Sbjct: 1679 --GMDILNKRPWHQLEPL--APYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFR 1734
Query: 246 K--DEPDFT--FGVITFFSEQKRLLEQALKGY------ANLEIGTVDSFQGKEFDVVFLS 295
K ++ DFT G+I+ + EQ + + + Y +++ T+D FQG+E +++ +S
Sbjct: 1735 KFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILIS 1794
Query: 296 SVRTRHTE-GFGFLKISSCLCVALSRQKRALIVAG 329
VR T+ GFLK + VAL+R K ++ V G
Sbjct: 1795 CVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLG 1829
>emb|CAC16347.1| (AJ300306) putative helicase [Arabidopsis thaliana]
Length = 635
Score = 80.5 bits (197), Expect = 3e-14
Identities = 102/375 (27%), Positives = 162/375 (43%), Gaps = 67/375 (17%)
Query: 3 LANDLLE--------ILSSQSPNDKR-IRVLLEYISVLERTPWDL--ESLLRDYNFVFSN 51
LAND+ + +L ++ N +R I+ L + ER L ++++ + + +
Sbjct: 286 LANDIRKEMKALNGKLLKAKDKNTRRLIQKELRTLGKEERKRQQLAVSDVIKNADVILTT 345
Query: 52 TTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAK-ERIILVGDDRQLPHYLDD 110
TG + L+ + FD VI+DE A+A LE+ +AL K R IL GD QLP +
Sbjct: 346 LTGALTRKLDNRT---FDLVIIDEGAQA--LEVACWIALLKGSRCILAGDHLQLPPTI-- 398
Query: 111 EIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGE 170
Q A+ E K L ++F ++L +L G E L +QY MH L+
Sbjct: 399 ----------QSAEAE-RKGLGRTLF-------ERLADLYGDEIKSMLTVQYRMHELIMN 440
Query: 171 LVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDN--------KPLAWIDVK--ESKE 220
S Y + S H L L+N L +D + +E
Sbjct: 441 WSSKELYDNKITAHSSVAS----------HMLFDLENVTKSSSTEATLLLVDTAGCDMEE 490
Query: 221 KRNADGSYYRESEI-TAIKECLDLFMKDEPDFTFGVITFFSEQKRLL------EQALKGY 273
K++ + S Y E E A+ L G+IT ++ Q LL E+ LK
Sbjct: 491 KKDEEESTYNEGEAEVAMAHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKLK-- 548
Query: 274 ANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREK 333
++EI TVD FQG+E + + +S VR+ + GFLK + VA++R +R + D E
Sbjct: 549 -DMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSRRQCCIVCDTET 607
Query: 334 FDTPESKDKVSGLFE 348
+ ++ FE
Sbjct: 608 VSSDAFLKRMIEYFE 622
>ref|NP_179502.1| (NM_127469) putative DNA2-NAM7 helicase family protein [Arabidopsis
thaliana]
pir||T00533 SEN1 protein homolog T20K24.14 - Arabidopsis thaliana
gb|AAD12029.1| (AC002392) putative DNA2-NAM7 helicase family protein [Arabidopsis
thaliana]
Length = 1090
Score = 78.6 bits (192), Expect = 1e-13
Identities = 83/315 (26%), Positives = 135/315 (42%), Gaps = 47/315 (14%)
Query: 31 LERTPWDLESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMAL 90
LE LE+ + + T + L + T FD V++DEAA+A+ + +L +AL
Sbjct: 738 LEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLAL 797
Query: 91 AKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMF-KKLKERAQKLKEL 149
R +LVGD +QLP + I KA ++ + L ER Q L
Sbjct: 798 GAARCVLVGDPQQLPATV------------------ISKAAGTLLYSRSLFERFQ----L 835
Query: 150 DGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKP 209
G + L +QY MHP + + S FY+ + ES + P + + +P
Sbjct: 836 AGCPTLL-LTVQYRMHPQIRDFPSRYFYQGRLKDSES------ISSAPDEIYYKDPVLRP 888
Query: 210 LAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDEPDF--------TFGVITFFSE 261
+ ++ +E Y + + C+ ++M + + GVIT +
Sbjct: 889 YLFFNISHGRESHRGGSVSY--ENVDEARFCVGVYMHLQKTLKSLGAGKVSVGVITPYKL 946
Query: 262 QKRLLEQALKG------YANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLC 315
Q + L+ + I TVD+FQG+E DV+ +S VR G GF+ +
Sbjct: 947 QLKCLKHEFGNALGQDELKEIYINTVDAFQGQERDVIIMSCVRA-SGHGVGFVSDIRRMN 1005
Query: 316 VALSRQKRALIVAGD 330
VAL+R +RAL V G+
Sbjct: 1006 VALTRARRALWVMGN 1020
>emb|CAC10094.2| (AL442164) related to SEN1 protein [Neurospora crassa]
Length = 2126
Score = 78.2 bits (191), Expect = 1e-13
Identities = 72/276 (26%), Positives = 125/276 (45%), Gaps = 43/276 (15%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F++VI+DEAA+ L L+ + + ILVGD +QLP + +Q
Sbjct: 1561 FETVIIDEAAQCVELSALIPLKYGCSKCILVGDPKQLP-------------PTVLSQSAA 1607
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
S+F ++++ +K L L+ QY MHP + FY+ + +
Sbjct: 1608 RYGYDQSLFVRMQKNHEKDVHL--------LDTQYRMHPEISSFPRAAFYEGLLQDGDDM 1659
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKD 247
K + +P+ H +L P + DV+ S+E+ + S E E+ K + L+ +
Sbjct: 1660 AKSRL---QPW-HRSTLLG--PYRFFDVRGSQERGPKNQSLVNEEEL---KVAMQLYRRF 1710
Query: 248 EPDF-------TFGVITFFSEQK-RLLEQALKGYAN-----LEIGTVDSFQGKEFDVVFL 294
+ D+ G+IT + Q RL Q + + + +E T D+FQG+E +++
Sbjct: 1711 KADYGNVDLKGKIGIITPYKAQLYRLRSQFAQRFGDAITDEIEFNTTDAFQGRECEIIIF 1770
Query: 295 SSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
S VR T G GF+ + V L+R + +L + GD
Sbjct: 1771 SCVRASPTGGIGFMTDIRRMNVGLTRARSSLWILGD 1806
>ref|NP_596499.1| (NC_003423) dna replication helicase [Schizosaccharomyces pombe]
sp|Q9URU2|DNA2_SCHPO DNA replication helicase dna2
pir||T39568 hypothetical helicase - fission yeast (Schizosaccharomyces pombe)
emb|CAB38508.1| (AL035637) dna replication helicase [Schizosaccharomyces pombe]
Length = 1398
Score = 77.0 bits (188), Expect = 3e-13
Identities = 88/362 (24%), Positives = 152/362 (41%), Gaps = 61/362 (16%)
Query: 20 RIRVLLEYISVLERTPWD----LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDE 75
+I L++ + E T +D L+ D V ++ G ++ +++ FD I+DE
Sbjct: 1011 KIHPLVKEFCLTEGTTFDDLASLKHFYEDPQIVACSSLGVYHSIFNKRK---FDYCIIDE 1067
Query: 76 AAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSM 135
A++ PL + + E+ +LVGD QLP L S+ ++D L S+
Sbjct: 1068 ASQI-PLPICLGPLQLAEKFVLVGDHYQLP---------PLVKNSRTSKD----GLSLSL 1113
Query: 136 FKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFY------------------ 177
FK L E+ E TL +QY M+ + L S++ Y
Sbjct: 1114 FKLLSEKHP--------EAVTTLRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLIL 1165
Query: 178 -KPH-NESFESPLKGKHLEEKPFK--HNLRVLDNKPLAWIDVKESKEKRNADGSYYRESE 233
K H ++ H K H++ + + ++ K + N ++ E
Sbjct: 1166 PKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDILGVESKTNNILENHTEAFLIEQA 1225
Query: 234 ITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVF 293
+++ E + + G+I+ + Q LL + LK + +EI TVD +QG++ D++
Sbjct: 1226 VSSFLE------RGVKQSSIGIISIYKSQVELLSKNLKSFTEIEINTVDRYQGRDKDIIL 1279
Query: 294 LSSVRTRHTEGFG-FLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQS 352
+S VR+ G L+ L VALSR K I+ G T S + VS L + L+
Sbjct: 1280 ISFVRSNSKNLVGELLRDWHRLNVALSRAKVKCIMFG---SLSTLSSSNIVSHLLKLLEK 1336
Query: 353 CK 354
K
Sbjct: 1337 NK 1338
>pir||T51292 Dna2p - fission yeast (Schizosaccharomyces pombe)
gb|AAD38528.1|AF144384_1 (AF144384) Dna2p [Schizosaccharomyces pombe]
Length = 1397
Score = 77.0 bits (188), Expect = 3e-13
Identities = 88/362 (24%), Positives = 152/362 (41%), Gaps = 61/362 (16%)
Query: 20 RIRVLLEYISVLERTPWD----LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDE 75
+I L++ + E T +D L+ D V ++ G ++ +++ FD I+DE
Sbjct: 1010 KIHPLVKEFCLTEGTTFDDLASLKHFYEDPQIVACSSLGVYHSIFNKRK---FDYCIIDE 1066
Query: 76 AAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSM 135
A++ PL + + E+ +LVGD QLP L S+ ++D L S+
Sbjct: 1067 ASQI-PLPICLGPLQLAEKFVLVGDHYQLP---------PLVKNSRTSKD----GLSLSL 1112
Query: 136 FKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFY------------------ 177
FK L E+ E TL +QY M+ + L S++ Y
Sbjct: 1113 FKLLSEKHP--------EAVTTLRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLIL 1164
Query: 178 -KPH-NESFESPLKGKHLEEKPFK--HNLRVLDNKPLAWIDVKESKEKRNADGSYYRESE 233
K H ++ H K H++ + + ++ K + N ++ E
Sbjct: 1165 PKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDILGVESKTNNILENHTEAFLIEQA 1224
Query: 234 ITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVF 293
+++ E + + G+I+ + Q LL + LK + +EI TVD +QG++ D++
Sbjct: 1225 VSSFLE------RGVKQSSIGIISIYKSQVELLSKNLKSFTEIEINTVDRYQGRDKDIIL 1278
Query: 294 LSSVRTRHTEGFG-FLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQS 352
+S VR+ G L+ L VALSR K I+ G T S + VS L + L+
Sbjct: 1279 ISFVRSNSKNLVGELLRDWHRLNVALSRAKVKCIMFG---SLSTLSSSNIVSHLLKLLEK 1335
Query: 353 CK 354
K
Sbjct: 1336 NK 1337
>ref|NP_496141.1| (NM_063740) NAM7 protein [Caenorhabditis elegans]
emb|CAC42246.1| (Z48178) similar to NAM7 protein~cDNA EST yk43d4.3 comes from this
gene~cDNA EST yk323b3.3 comes from this gene
[Caenorhabditis elegans]
Length = 1553
Score = 76.6 bits (187), Expect = 4e-13
Identities = 71/265 (26%), Positives = 125/265 (46%), Gaps = 32/265 (12%)
Query: 70 SVIVDEAAKANPLELL-MVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIE 128
+V +DEA++ LL ++ + L+GD QLP Y ++ + KL+D + +E
Sbjct: 1205 AVQIDEASQLAECTLLGLLKSFNNASFGLIGDIHQLPPYCEEGLEGKLKDFG--IGNTME 1262
Query: 129 KALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPL 188
+A+K+ MF TL Y HP EL+S++FY S S L
Sbjct: 1263 RAIKEKMFP-----------------VCTLRNVYRCHPKTTELLSELFYDGALVSGVSEL 1305
Query: 189 KGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDE 248
K + + P+ +++ + K S SE + + E + + D
Sbjct: 1306 ARSDFMTK--RDDFWPNPKFPMMFVNNTGASTKMGTSTS--NSSEKSIVGEIVQNLINDP 1361
Query: 249 PD----FTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEG 304
+ GVI+F+S Q +L + L+G + ++ GTVD+FQG E +++ + S R ++
Sbjct: 1362 RNPVNPSDIGVISFYSAQTSILTEHLRG-SGVKCGTVDAFQGSEKEIIIMCSTNERISD- 1419
Query: 305 FGFLKISSCLCVALSRQKRALIVAG 329
F+++S+ L VA+SR K+ I+ G
Sbjct: 1420 --FMQLSNRLNVAMSRAKQVTIIIG 1442
>ref|NP_496142.1| (NM_063741) NAM7 protein [Caenorhabditis elegans]
sp|Q09449|YQ12_CAEEL HYPOTHETICAL 175.7 KD PROTEIN C05C10.2 IN CHROMOSOME II
pir||T18941 hypothetical protein C05C10.2 - Caenorhabditis elegans
emb|CAA88201.1| (Z48178) similarity with yeast NAM7 protein (Swiss Prot accession
number P30771) and may possibly interact with DNA or
RNA~cDNA EST yk7f5.5 comes from this gene~cDNA EST
yk43d4.3 comes from this gene~cDNA EST yk68h2.5 comes
from this gene~cDNA EST yk13>
Length = 1551
Score = 76.6 bits (187), Expect = 4e-13
Identities = 71/265 (26%), Positives = 125/265 (46%), Gaps = 32/265 (12%)
Query: 70 SVIVDEAAKANPLELL-MVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIE 128
+V +DEA++ LL ++ + L+GD QLP Y ++ + KL+D + +E
Sbjct: 1205 AVQIDEASQLAECTLLGLLKSFNNASFGLIGDIHQLPPYCEEGLEGKLKDFG--IGNTME 1262
Query: 129 KALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPL 188
+A+K+ MF TL Y HP EL+S++FY S S L
Sbjct: 1263 RAIKEKMFP-----------------VCTLRNVYRCHPKTTELLSELFYDGALVSGVSEL 1305
Query: 189 KGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDE 248
K + + P+ +++ + K S SE + + E + + D
Sbjct: 1306 ARSDFMTK--RDDFWPNPKFPMMFVNNTGASTKMGTSTS--NSSEKSIVGEIVQNLINDP 1361
Query: 249 PD----FTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEG 304
+ GVI+F+S Q +L + L+G + ++ GTVD+FQG E +++ + S R ++
Sbjct: 1362 RNPVNPSDIGVISFYSAQTSILTEHLRG-SGVKCGTVDAFQGSEKEIIIMCSTNERISD- 1419
Query: 305 FGFLKISSCLCVALSRQKRALIVAG 329
F+++S+ L VA+SR K+ I+ G
Sbjct: 1420 --FMQLSNRLNVAMSRAKQVTIIIG 1442
>ref|XP_030494.1| (XM_030494) KIAA1404 protein [Homo sapiens]
emb|CAC33877.1| (AL049766) dJ686N3.2.1 (KIAA1404 protein, isoform 1) [Homo sapiens]
Length = 1918
Score = 76.3 bits (186), Expect = 5e-13
Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 38/296 (12%)
Query: 41 LLRDYNFVFSNTTG--QHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILV 98
+L+D V TTG ++ Q L++ E VIV+EAA+ + ++ A + +IL+
Sbjct: 974 ILKDAQVVGMTTTGAAKYRQILQKVEPRI---VIVEEAAEVLEAHTIATLSKACQHLILI 1030
Query: 99 GDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITL 158
GD +QL + + + + A ++ L ER K+ F+ L
Sbjct: 1031 GDHQQL----------------RPSANVYDLAKNFNLEVSLFERLVKVNIP-----FVRL 1069
Query: 159 NMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKES 218
N Q+ M P + L++ Y+ E+ S LK + + K NL +++ +++E
Sbjct: 1070 NYQHRMCPEIARLLTPHIYQDL-ENHPSVLKYEKI--KGVSSNLFFVEHN-FPEQEIQEG 1125
Query: 219 KEKRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQAL--KGYANL 276
K +N +++ ++ C ++ ++T ++ Q L + + K +A +
Sbjct: 1126 KSHQNQHEAHF------VVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGV 1179
Query: 277 EIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDRE 332
+ VD +QG+E D++ LS VR+ GFL+IS+ +CVALSR K+ + G+ +
Sbjct: 1180 RVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQ 1235
>dbj|BAB14696.1| (AK023836) unnamed protein product [Homo sapiens]
Length = 1137
Score = 76.3 bits (186), Expect = 5e-13
Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 38/296 (12%)
Query: 41 LLRDYNFVFSNTTG--QHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILV 98
+L+D V TTG ++ Q L++ E VIV+EAA+ + ++ A + +IL+
Sbjct: 266 ILKDAQVVGMTTTGAAKYRQILQKVEPRI---VIVEEAAEVLEAHTIATLSKACQHLILI 322
Query: 99 GDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITL 158
GD +QL + + + + A ++ L ER K+ F+ L
Sbjct: 323 GDHQQL----------------RPSANVYDLAKNFNLEVSLFERLVKVNIP-----FVRL 361
Query: 159 NMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKES 218
N Q+ M P + L++ Y+ E+ S LK + + K NL +++ +++E
Sbjct: 362 NYQHRMCPEIARLLTPHIYQDL-ENHPSVLKYEKI--KGVSSNLFFVEHN-FPEQEIQEG 417
Query: 219 KEKRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQAL--KGYANL 276
K +N +++ ++ C ++ ++T ++ Q L + + K +A +
Sbjct: 418 KSHQNQHEAHF------VVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGV 471
Query: 277 EIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDRE 332
+ VD +QG+E D++ LS VR+ GFL+IS+ +CVALSR K+ + G+ +
Sbjct: 472 RVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQ 527
>dbj|BAA92642.1| (AB037825) KIAA1404 protein [Homo sapiens]
Length = 1925
Score = 76.3 bits (186), Expect = 5e-13
Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 38/296 (12%)
Query: 41 LLRDYNFVFSNTTG--QHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILV 98
+L+D V TTG ++ Q L++ E VIV+EAA+ + ++ A + +IL+
Sbjct: 981 ILKDAQVVGMTTTGAAKYRQILQKVEPRI---VIVEEAAEVLEAHTIATLSKACQHLILI 1037
Query: 99 GDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITL 158
GD +QL + + + + A ++ L ER K+ F+ L
Sbjct: 1038 GDHQQL----------------RPSANVYDLAKNFNLEVSLFERLVKVNIP-----FVRL 1076
Query: 159 NMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKES 218
N Q+ M P + L++ Y+ E+ S LK + + K NL +++ +++E
Sbjct: 1077 NYQHRMCPEIARLLTPHIYQDL-ENHPSVLKYEKI--KGVSSNLFFVEHN-FPEQEIQEG 1132
Query: 219 KEKRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQAL--KGYANL 276
K +N +++ ++ C ++ ++T ++ Q L + + K +A +
Sbjct: 1133 KSHQNQHEAHF------VVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGV 1186
Query: 277 EIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDRE 332
+ VD +QG+E D++ LS VR+ GFL+IS+ +CVALSR K+ + G+ +
Sbjct: 1187 RVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQ 1242
>sp|O76512|RNT1_CAEEL Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor
1) (Up-frameshift suppressor 1 homolog)
pir||T43280 nonsense-mediated mRNA decay trans-acting factor - Caenorhabditis
elegans
gb|AAC26789.1| (AF074017) nonsense-mediated mRNA decay trans-acting factor
[Caenorhabditis elegans]
Length = 1069
Score = 75.1 bits (183), Expect = 1e-12
Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 35/270 (12%)
Query: 70 SVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEK 129
+V++DE+ +A E+L+ + +++LVGD QL + I KK
Sbjct: 606 TVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVV---ICKKAAIAG--------- 653
Query: 130 ALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLK 189
L S+F++L L G F L +QY MHP+L E S+VFY ++ +
Sbjct: 654 -LSQSLFERLV--------LLGIRPF-RLQVQYRMHPVLSEFPSNVFYDGSLQNGVTE-N 702
Query: 190 GKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMK-DE 248
+H+ + NKP + S+E + S+ +E +++ + +K
Sbjct: 703 DRHMTGVDWHWPK---PNKPAFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAGV 759
Query: 249 PDFTFGVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSSVRTR 300
GVIT + Q+ + + K Y N+EI +VD+FQG+E D + ++ VR+
Sbjct: 760 QPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSN 819
Query: 301 HTEGFGFLKISSCLCVALSRQKRALIVAGD 330
G GFL L VA++R K L++ G+
Sbjct: 820 DILGIGFLSDPRRLNVAITRAKYGLVLVGN 849
>ref|NP_490829.1| (NM_058428) Y48G8AL.6.p [Caenorhabditis elegans]
gb|AAK29903.2| (AC025721) Hypothetical protein Y48G8AL.6 [Caenorhabditis elegans]
Length = 1069
Score = 74.3 bits (181), Expect = 2e-12
Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 35/270 (12%)
Query: 70 SVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEK 129
+V++DE+ +A E+L+ + +++LVGD QL + I KK
Sbjct: 606 TVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVV---ICKKAAIAG--------- 653
Query: 130 ALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLK 189
L S+F++L L G F L +QY MHP+L E S+VFY ++ +
Sbjct: 654 -LSQSLFERLV--------LLGIRPF-RLQVQYRMHPVLSEFPSNVFYDGSLQNGVTE-N 702
Query: 190 GKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMK-DE 248
+H+ + NKP + S+E + S+ +E +++ + +K
Sbjct: 703 DRHMTGVDWHWPK---PNKPAFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAGV 759
Query: 249 PDFTFGVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSSVRTR 300
GVIT + Q+ + + K Y N+EI +VD+FQG+E D + ++ VR+
Sbjct: 760 QPHQIGVITPYEGQRSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSN 819
Query: 301 HTEGFGFLKISSCLCVALSRQKRALIVAGD 330
G GFL L VA++R K L++ G+
Sbjct: 820 DILGIGFLSDPRRLNVAITRAKYGLVLVGN 849
>gb|EAA11070.1| (AAAB01008960) agCP6286 [Anopheles gambiae str. PEST]
Length = 612
Score = 73.9 bits (180), Expect = 3e-12
Identities = 68/264 (25%), Positives = 115/264 (42%), Gaps = 32/264 (12%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F I+DEA + L L+ + +++LVGD QLP + D Q I
Sbjct: 375 FSVCIIDEATQCTELCSLLPLQYHLSKMVLVGDINQLPATVLD-------------QQCI 421
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
+ + S+F +L + ++ L QY MHP + + FY
Sbjct: 422 DAGFRASLFSRLYQSYAGAGGQPPEDGLKMLKTQYRMHPKICHWPNRYFY---------- 471
Query: 188 LKGKHLEEKPFKHNLR-VLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMK 246
G L+ +R + KP I + +E A Y + EI + E + ++
Sbjct: 472 --GGQLKNATCTEAMRKTIPLKPYMVISLSYDQELTQAQYEIYNKDEILFVVELMKQVVR 529
Query: 247 D-EPDFTFGVITFFSEQKRLLEQALKG--YANLEIGTVDSFQGKEFDVVFLSSVRTRHTE 303
+ +F +IT ++ K + Q+L+ +E+ ++DS QGKEFDVV +S R +
Sbjct: 530 CCDKHASFAIITPYARHKEEMIQSLRSTQLKRVEVHSIDSVQGKEFDVVIISLAR---SN 586
Query: 304 GFGFLKISSCLCVALSRQKRALIV 327
G GFL + VAL+R ++ L++
Sbjct: 587 GAGFLNNPERINVALTRARQCLVL 610
>ref|NP_055692.1| (NM_014877) helicase KIAA0054 [Homo sapiens]
sp|P42694|Y054_HUMAN Hypothetical protein KIAA0054
dbj|BAA06147.1| (D29677) KIAA0054 [Homo sapiens]
Length = 1942
Score = 72.0 bits (175), Expect = 1e-11
Identities = 80/324 (24%), Positives = 135/324 (40%), Gaps = 65/324 (20%)
Query: 39 ESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKE--RII 96
E +L+ V + T Q+ L+ E +F +++DEAA+A E +M +ALA + RI+
Sbjct: 760 EDILKHRVVVVTLNTSQYLCQLDL-EPGFFTHILLDEAAQAMECETIMPLALATQNTRIV 818
Query: 97 LVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFI 156
L GD QL ++ E + E+ L S+ +L E C I
Sbjct: 819 LAGDHMQLSPFVYSEFAR-------------ERNLHVSLLDRLYEHYPA-----EFPCRI 860
Query: 157 TLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVK 216
L Y H + S++FY+ + GK K F PL + +
Sbjct: 861 LLCENYRSHEAIINYTSELFYEG-----KLMASGKQPAHKDFY---------PLTFFTAR 906
Query: 217 ESKEKRNADGSYYRESEITAIKECLDLFMKDEP-------DFTFGVITFFSEQKRLLEQA 269
+ ++Y +E+ + E ++ + P D + GV+T +++Q +
Sbjct: 907 GEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAE 966
Query: 270 L--KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHT---------------------EGFG 306
L K +++ + V + QGK+F V+FLS+VRTRHT +G
Sbjct: 967 LRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYG 1026
Query: 307 FLKISSCLCVALSRQKRALIVAGD 330
FL L A++R + + V GD
Sbjct: 1027 FLSNYKLLNTAITRAQSLVAVVGD 1050
>ref|NP_113505.1| (NC_002753) component of a tRNA splicing complex [Guillardia theta]
emb|CAC27074.1| (AJ010592) component of a tRNA splicing complex [Guillardia theta]
Length = 692
Score = 72.0 bits (175), Expect = 1e-11
Identities = 75/268 (27%), Positives = 115/268 (41%), Gaps = 38/268 (14%)
Query: 71 VIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKA 130
+I+DEAA++ L L+ + RIILVGD QLP A + A
Sbjct: 386 LIIDEAAQSIELSSLIPIKKYTHRIILVGDIHQLP-----------------ATVFSKSA 428
Query: 131 LKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKG 190
+ + L +R Q + + L +QY MHP + + FYK + + K
Sbjct: 429 IAFGYNRSLLKRFQL-----NRYPTLFLGIQYRMHPQISSFPARKFYKNNLKDSWKVSKI 483
Query: 191 KHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADG--SYYRESEITAIK---ECLDLFM 245
+ H LR PL + D+ + E + D S+ EI I + +
Sbjct: 484 SNF------HQLRCFS--PLIFFDIIDGVENYHTDNHFSWCNLDEIRFINLYFRSIICLI 535
Query: 246 KDEPDFTFGVITFFSEQKRLLEQAL---KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHT 302
+ + T G I+ +S Q + L K N +I T+DSFQGKE D++F S VR++
Sbjct: 536 SNLNELTIGFISGYSGQIEEMRDILSNSKIKLNEQISTIDSFQGKEKDILFFSCVRSKIE 595
Query: 303 EGFGFLKISSCLCVALSRQKRALIVAGD 330
G GFL + VA +R K + G+
Sbjct: 596 RGIGFLADGRRINVAFTRAKLGFWIFGN 623
>ref|NP_588369.1| (NC_003421) putative dna-binding protein [Schizosaccharomyces
pombe]
pir||T41580 probable dna-binding protein - fission yeast (Schizosaccharomyces
pombe)
emb|CAB11611.1| (Z98951) hypothetical protein [Schizosaccharomyces pombe]
emb|CAA20863.1| (AL031546) putative dna-binding protein [Schizosaccharomyces pombe]
Length = 660
Score = 70.9 bits (172), Expect = 2e-11
Identities = 80/279 (28%), Positives = 128/279 (45%), Gaps = 50/279 (17%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD+VI+DEA++A + + + L ++IL GD QL S + Q
Sbjct: 383 FDAVIIDEASQALEPQCWIPL-LGMNKVILAGDHMQL---------------SPNVQS-- 424
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
K SMF++L + + D +CF LN+QY MH L+ + SD FY E
Sbjct: 425 -KRPYISMFERLVK-----SQGDLVKCF--LNIQYRMHELISKFPSDTFYDSKLVPAEEV 476
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDV--KESKEKRNAD-GSYYRESE----------- 233
K ++ + + L + P+ + D ++ R+ D ++Y++S+
Sbjct: 477 KKRLLMDLENVEET--ELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSY 534
Query: 234 -ITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYA-NLEIGTVDSFQGKEFDV 291
I+ + E L KD V+T ++ Q L+ Q LK +E+G+VD QG+E +
Sbjct: 535 HISGLLEA-GLEAKD-----IAVVTPYNAQVALIRQLLKEKGIEVEMGSVDKVQGREKEA 588
Query: 292 VFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
+ S VR+ GFL L VA++R KR L V GD
Sbjct: 589 IIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGD 627
>emb|CAD31257.1| (AL672115) PUTATIVE HELICASE PROTEIN ATP-BINDING [Mesorhizobium loti]
Length = 1193
Score = 70.9 bits (172), Expect = 2e-11
Identities = 90/359 (25%), Positives = 149/359 (41%), Gaps = 71/359 (19%)
Query: 41 LLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGD 100
+L N VFS + + L ++ FD V+++EAAKA EL+ ++L+ R +L+GD
Sbjct: 783 VLESANVVFSTSNSFDVERL-CEDGAQFDWVLIEEAAKATGPELIAPLSLSGRR-LLIGD 840
Query: 101 DRQLPHYLDDEIGKKLEDES------------------QDAQDEIEKALKDSM------- 135
QLP + + + L + + + DE+ A++D
Sbjct: 841 HHQLPPFDAERLTSILSNNTAVRNALQQVEHVLGATFFESGLDELRSAVRDEAVLETTTQ 900
Query: 136 --------FKKLKERAQKLKELDG---KECFITLNMQYGMHPLLGELVSDVFYKPHNESF 184
F+ L E ++ + + G + L Q+ M P + ELVS FYK +
Sbjct: 901 LALRMLEPFRSLVEEEERKRTVAGGQRRTVSSELWCQHRMDPAIAELVSRCFYKNRLYTG 960
Query: 185 ESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNAD------GSYYRESEITAIK 238
+ ++ L PF + ++ + P+ +ID+ + A+ ++ SE +
Sbjct: 961 DDRIESAKL-PLPFTFDSKI-PSSPIVFIDMPFASRSGRAEPVEKGRPRWHNPSERKIVL 1018
Query: 239 ECL------DLFMKDEPDFTFGVITFFSEQKRLLEQAL-----KGYANLE---------- 277
E L DL T V++ + Q + + L G +++
Sbjct: 1019 EILRRLKVADLKPAPADLNTLAVLSPYRAQVERMARDLDVLRDSGASSIAQFSGFTHDSR 1078
Query: 278 -IGTVDSFQGKEFDVVFLSSVRTRHTEG---FGFLKISSCLCVALSRQKRALIVAGDRE 332
GTVDS QG E D+V +S VR H G GFL+ + V LSR K LIV G E
Sbjct: 1079 MHGTVDSSQGSEADLVIVSLVRNNHRNGVASLGFLRDPRRMNVLLSRAKMQLIVVGSLE 1137
>sp|Q98TR3|RNT1_FUGRU Putative regulator of nonsense transcripts 1
emb|CAC33025.1| (AJ301641) hypothetical protein [Takifugu rubripes]
Length = 1097
Score = 70.9 bits (172), Expect = 2e-11
Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 21/214 (9%)
Query: 156 ITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDV 215
I L +QY MHP L S++FY+ S ++ + +K F + KP+ +
Sbjct: 677 IRLQVQYRMHPALSAFPSNIFYEG---SLQNGVTAGDRIKKGFDFQWPQPE-KPMFFYVT 732
Query: 216 KESKEKRNADGSYYRESEITAIKECLDLFMKD--EPDFTFGVITFFSEQKRLLEQALKGY 273
+ +E ++ SY +E +++ +K +PD G+IT + Q+ L Q ++
Sbjct: 733 QGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPD-QIGIITPYEGQRSYLVQYMQFS 791
Query: 274 ANL-------EIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALI 326
+L EI +VD+FQG+E D + LS VR +G GFL L VAL+R K +I
Sbjct: 792 GSLHTKLYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVI 851
Query: 327 VAGDREKFDTPESKDKVSGLFEFLQSCKKEGKIL 360
+ G+ P++ K L+ L + KE K+L
Sbjct: 852 IVGN------PKALSK-QPLWNNLLNNYKEQKVL 878
>ref|NP_596055.1| (NC_003423) tRNA-splicing endonuclease positive effector
[Schizosaccharomyces pombe]
pir||T40065 tRNA-splicing endonuclease positive effector - fission yeast
(Schizosaccharomyces pombe)
emb|CAA22438.1| (AL034463) tRNA-splicing endonuclease positive effector
[Schizosaccharomyces pombe]
Length = 1944
Score = 70.1 bits (170), Expect = 4e-11
Identities = 69/272 (25%), Positives = 127/272 (46%), Gaps = 36/272 (13%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
F +VI+DEAA+A L ++ + E ++VGD QLP + + K
Sbjct: 1510 FRTVIIDEAAQAVELSSIIPLKYGCESCVMVGDPNQLPPTVLSKTSAKFG---------Y 1560
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
++L MFK+ E A L++QY M+P + S FY +++ + P
Sbjct: 1561 SQSLYVRMFKQHNESA------------CLLSIQYRMNPEISRFPSKFFY--NSKLLDGP 1606
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESE---ITAIKECLDLF 244
+ +P+ + ++ + + +V ++ N+ Y E + + + +
Sbjct: 1607 NMSA-VTSRPWHEDPQLGIYR---FFNVHGTEAFSNSKSLYNVEEASFILLLYERLIQCY 1662
Query: 245 MKDEPDFTFGVIT-FFSEQKRLLEQALKGYAN-----LEIGTVDSFQGKEFDVVFLSSVR 298
+ + + GV+T + S+ ++L Q + Y + L+I TVD FQG+E D++ S VR
Sbjct: 1663 LNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVR 1722
Query: 299 TRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
+ + G GFL+ L VAL+R K +L + G+
Sbjct: 1723 SSMSGGIGFLQDLRRLNVALTRAKSSLYIVGN 1754
>ref|NP_280823.1| (NC_002607) DNA binding protein eukaryotic-like; Dbp [Halobacterium
sp. NRC-1]
gb|AAG20303.1| (AE005104) DNA binding protein eukaryotic-like; Dbp [Halobacterium
sp. NRC-1]
Length = 751
Score = 70.1 bits (170), Expect = 4e-11
Identities = 75/282 (26%), Positives = 115/282 (40%), Gaps = 45/282 (15%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD +VDEA +A+ + + A + ++L GD RQLP Y E G
Sbjct: 474 FDLAVVDEATQASRAATAIAVNAA-DTLVLAGDHRQLPPYGVREGGAG------------ 520
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
++ S+F+ L +R G + + L QY MH + ++ FY
Sbjct: 521 --EMRPSLFETLIDRY-------GDDVAVLLARQYRMHDAIAGFPNEAFY---------- 561
Query: 188 LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKD 247
G LE + V P+A +DV + + S +E + + + +D +
Sbjct: 562 --GGRLETAAVAADRAVDGLPPVAVVDVAGQERRDERGASVRNAAEASVVADRVDTIRRA 619
Query: 248 --EPDFTFGVITFFSEQKRLLEQALKGYA----NLEIGTVDSFQGKEFDVVFLSSVRTRH 301
EP GVI +S+ + L L + TVDSFQG E D V +S R+
Sbjct: 620 GVEPG-DLGVIAAYSDHVSAIRGVLADRGLDRPALTVDTVDSFQGGERDAVVVSFARSND 678
Query: 302 TEGFGFLKISSC----LCVALSRQKRALIVAGDREKFDTPES 339
GFL+ + L VAL+R +R L + GD P S
Sbjct: 679 AHDAGFLEHPAAGPRRLNVALTRARRHLSLVGDWATLTDPAS 720
>ref|NP_588411.1| (NC_003421) hypothetical protein [Schizosaccharomyces pombe]
pir||T41111 hypothetical ATP binding protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAA20777.1| (AL031540) hypothetical protein [Schizosaccharomyces pombe]
Length = 1015
Score = 69.7 bits (169), Expect = 5e-11
Identities = 87/341 (25%), Positives = 141/341 (40%), Gaps = 60/341 (17%)
Query: 41 LLRDYNFVFSNTTG--QHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILV 98
LLR N + TTG ++ LER ++EAA ++ + + E+++L+
Sbjct: 679 LLRGANVIGMTTTGLNKYRDILERINPKI---CFIEEAADVLEGPIIPAVFPSLEQLVLI 735
Query: 99 GDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITL 158
GD +QL G QD + L SMF++L E + + L
Sbjct: 736 GDHKQL------RPGCSTYALRQDPFN-----LSISMFERLVENDME---------YTRL 775
Query: 159 NMQYGMHPLLGELVSDVFYKPHN---ESFESPLKGKHLEEKPFKHNLRVLDNKPLAW-ID 214
MQ MHP + LVS V+ + + + G + F + R+ DN A I+
Sbjct: 776 TMQRRMHPQIRRLVSSVYEDLSDYEITKYWPSIPGMGEIRRFFLTHSRIEDNDGFASKIN 835
Query: 215 VKESKEKRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYA 274
+ E++ ++ + L +TF++ QK L+E+ L
Sbjct: 836 LFEAQ---------------MLVQFAVYLINNGVEPQKITCLTFYAAQKDLIERLLSESL 880
Query: 275 NLE-----IGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAG 329
N E + TVD +QG+E DVV LS VR GFL +CV+LSR +R L + G
Sbjct: 881 NREKHFIKVATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARRGLFIFG 940
Query: 330 DR-----------EKFDTPESKDKVSGLFEFLQSCKKEGKI 359
+ + +T + + + GL + L K+G I
Sbjct: 941 NAQLVAESNPLWWDAINTLMNDETIQGLGDHLPLFTKDGTI 981
>dbj|BAB11370.1| (AB017068) contains similarity to nonsense-mediated mRNA decay
trans-acting factors~gene_id:MJG14.20 [Arabidopsis
thaliana]
Length = 701
Score = 68.9 bits (167), Expect = 8e-11
Identities = 77/305 (25%), Positives = 131/305 (42%), Gaps = 49/305 (16%)
Query: 42 LRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKER-IILVGD 100
L++ + +F +G + R T D ++VDEAA+ E + + L+ R +L+GD
Sbjct: 366 LQNADIIFCTASGAADMNPIR--TGSVDLLVVDEAAQLKECESVAALQLSGLRHAVLIGD 423
Query: 101 DRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNM 160
+ QLP + +EI +K + S+F++L K L LN+
Sbjct: 424 ELQLPAMVHNEICEKAK-------------FGRSLFERLVLLGHN-KHL--------LNV 461
Query: 161 QYGMHPLLGELVSDVFY----KPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVK 216
QY MHP + + FY K ES + + L+ F ++I+V
Sbjct: 462 QYRMHPSISRFPNKEFYGGRIKDAANVQESIYQKRFLQGNMFGS---------FSFINVG 512
Query: 217 ESKEKRNADGSYYRESEITAIKECLDLFMKDEPD----FTFGVITFFSEQKRLLEQ---- 268
+E+ S E+ I E + K + + GV++ + Q R +++
Sbjct: 513 RGEEEFGDGHSPKNMVEVAVISEIISNLFKVSSERRIKMSVGVVSPYKGQVRAIQERTTN 572
Query: 269 ---ALKGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRAL 325
+L G L + +VD FQG E D++ +S+VR+ GFL VAL+R + L
Sbjct: 573 KYSSLSGLFTLNVRSVDGFQGGEEDIIIISTVRSNGNGKVGFLNNRQRANVALTRARHCL 632
Query: 326 IVAGD 330
V G+
Sbjct: 633 WVIGN 637
>ref|NP_567301.1| (NM_116792) contains similarity to nonsense-mediated mRNA decay
trans-acting factors [Arabidopsis thaliana]
gb|AAD48967.1|AF147263_9 (AF147263) contains similarity to nonsense-mediated mRNA decay
trans-acting factors [Arabidopsis thaliana]
emb|CAB81096.1| (AL161503) contains similarity to nonsense-mediated mRNA decay
trans-acting factors~similarity to~Contains Prokaryotic
membrane lipoprotein lipid attachment site AA120-130
[Arabidopsis thaliana]
Length = 660
Score = 68.6 bits (166), Expect = 1e-10
Identities = 74/302 (24%), Positives = 128/302 (41%), Gaps = 42/302 (13%)
Query: 42 LRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMAL-AKERIILVGD 100
L++ + +F +G ER + D ++VDEAA+ E + + L +L+GD
Sbjct: 378 LQNAHIIFCTASGAAEMTAERAGS--IDMLVVDEAAQLKECESVAALQLQGLHHAVLIGD 435
Query: 101 DRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNM 160
+ QLP + E+ +K + S+F++L K K L LN+
Sbjct: 436 ELQLPAMVQSEVCEKAK-------------FVRSLFERLDSLGHK-KHL--------LNV 473
Query: 161 QYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKE 220
QY MHP + + FY E +K +++ + N+ ++I+V KE
Sbjct: 474 QYRMHPSISLFPNMEFYGGKISDAEI-VKESTYQKRFLQGNMF----GSFSFINVGLGKE 528
Query: 221 KRNADGSYYRESEITAIKECLDLFMKDEPD----FTFGVITFFSEQKRLLEQAL------ 270
+ S EI + E L +K + + GVI+ + Q +++ +
Sbjct: 529 EFGDGHSPKNMVEIAVVSEILTNLLKVSSETKTKMSVGVISPYKAQVSAIQERIGDKYTS 588
Query: 271 --KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVA 328
L + +VD FQG E D++ +S+VR+ GFL VAL+R + L V
Sbjct: 589 VSDNLFTLNVRSVDGFQGGEEDIIIISTVRSNCNGNIGFLSNRQRANVALTRARHCLWVI 648
Query: 329 GD 330
G+
Sbjct: 649 GN 650
>gb|EAA05697.1| (AAAB01008834) agCP13018 [Anopheles gambiae str. PEST]
Length = 1652
Score = 67.8 bits (164), Expect = 2e-10
Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 58/290 (20%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKER--IILVGDDRQLPHYLDDEIGKKLEDESQDAQ 124
+F + +DEAA+A E +M +ALA ER I+L GD Q+ L K
Sbjct: 1099 HFTHIFLDEAAQAMECEAIMPLALAGERTRIVLAGDHMQMSPELFSNFAK---------- 1148
Query: 125 DEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESF 184
E+ L S+ ++L + + C I L Y H + S++FY+
Sbjct: 1149 ---ERKLHVSLLERLYDHYP-----NDFPCKILLCENYRAHDAIIRFTSELFYEQ----- 1195
Query: 185 ESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLF 244
+ GK + F PL + + + ++Y SE+ + E +
Sbjct: 1196 KLIASGKQPRHEKFY---------PLTFFTTRGEDVQDKNSTAFYNNSEVYEVVERVCEL 1246
Query: 245 MKDEP-------DFTFGVITFFSEQKRLLEQALKG--YANLEIGTVDSFQGKEFDVVFLS 295
K P D + G++T +++Q + L+ + + V + QGK+F +FLS
Sbjct: 1247 RKKWPSAWGKINDQSIGIMTPYADQVFRIRSELRKRRMGGISVERVANVQGKQFRAIFLS 1306
Query: 296 SVRTRHT------EG---------FGFLKISSCLCVALSRQKRALIVAGD 330
+VRTR T EG +GFL S L A++R + + V GD
Sbjct: 1307 TVRTRRTCNANASEGAGTSSEEVDYGFLSNSKLLNTAITRAQSLVAVVGD 1356
>ref|NP_176757.1| (NM_105254) hypothetical protein [Arabidopsis thaliana]
Length = 1050
Score = 66.6 bits (161), Expect = 4e-10
Identities = 85/343 (24%), Positives = 148/343 (42%), Gaps = 56/343 (16%)
Query: 2 SLANDLLEILSSQSPNDKRIRVLLEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQALE 61
S D LE+L+S S + K L ++IS E L+ L D ++ T + A
Sbjct: 499 SRTQDCLEMLTSISMSIK----LPDFISKFE-----LQKLCLDNAYLLFCTAS--SSARL 547
Query: 62 RKETPYFDSVIVDEAAKANPLELLMVMAL-AKERIILVGDDRQLPHYLDDEIGKKLEDES 120
+P +++DEAA+ E + + L + IL+GD++QLP + I + +
Sbjct: 548 HMSSP-IQLLVIDEAAQLKECESAIPLQLRGLQHAILIGDEKQLPAMIKSNIASEAD--- 603
Query: 121 QDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPH 180
L S+F++L K+L LNMQY MHP + + FY
Sbjct: 604 ----------LGRSLFERLVLLGHN-KQL--------LNMQYRMHPSISIFPNREFYDM- 643
Query: 181 NESFESPLKGKHLEEKPFKHNLRVLDNK---PLAWIDVKESKEKRNADGSYYRESEITAI 237
+ ++P EK F L K P ++I++ +E+ S E++ +
Sbjct: 644 -KILDAPSVRLRSYEKKF------LPEKMYGPYSFINIAYGREQFGEGYSSKNLVEVSVV 696
Query: 238 KECLD----LFMKDEPDFTFGVITFFSEQKRLLEQAL------KGYANLEIGTVDSFQGK 287
E + + K + GVI+ + Q +++ + +G + + +VD FQG
Sbjct: 697 AEIVSKLYSVSRKTGRTISVGVISPYKAQVFAIQERIGEKYNTEGTFTVSVRSVDGFQGG 756
Query: 288 EFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
E D++ +S+VR+ GFL VAL+R + L + G+
Sbjct: 757 EEDIIIISTVRSNGNGAIGFLSNQQRTNVALTRARYCLWILGN 799
>gb|AAF23836.1|AC007234_8 (AC007234) F1E22.16 [Arabidopsis thaliana]
Length = 1075
Score = 65.9 bits (159), Expect = 7e-10
Identities = 86/354 (24%), Positives = 148/354 (41%), Gaps = 53/354 (14%)
Query: 2 SLANDLLEILSSQSPNDKRIRVLLEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQALE 61
S D LE+L+S S + K L ++IS E L+ L D ++ T + A
Sbjct: 499 SRTQDCLEMLTSISMSIK----LPDFISKFE-----LQKLCLDNAYLLFCTAS--SSARL 547
Query: 62 RKETPYFDSVIVDEAAKANPLELLMVMAL-AKERIILVGDDRQLPHYLDDEIGKKLEDES 120
+P +++DEAA+ E + + L + IL+GD++QLP + +G +
Sbjct: 548 HMSSP-IQLLVIDEAAQLKECESAIPLQLRGLQHAILIGDEKQLPAMIKSNVGSLILTNY 606
Query: 121 QDAQDEIEKALKDSMFKKLKERAQKLKELD-GKECFITL----------NMQYGMHPLLG 169
+ +F L Q E D G+ F L NMQY MHP +
Sbjct: 607 TH--------IHSLLFAYLISYVQIASEADLGRSLFERLVLLGHNKQLLNMQYRMHPSIS 658
Query: 170 ELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNK---PLAWIDVKESKEKRNADG 226
+ FY + ++P EK F L K P ++I++ +E+
Sbjct: 659 IFPNREFYDM--KILDAPSVRLRSYEKKF------LPEKMYGPYSFINIAYGREQFGEGY 710
Query: 227 SYYRESEITAIKECLD----LFMKDEPDFTFGVITFFSEQKRLLEQAL------KGYANL 276
S E++ + E + + K + GVI+ + Q +++ + +G +
Sbjct: 711 SSKNLVEVSVVAEIVSKLYSVSRKTGRTISVGVISPYKAQVFAIQERIGEKYNTEGTFTV 770
Query: 277 EIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
+ +VD FQG E D++ +S+VR+ GFL VAL+R + L + G+
Sbjct: 771 SVRSVDGFQGGEEDIIIISTVRSNGNGAIGFLSNQQRTNVALTRARYCLWILGN 824
>ref|NP_200022.1| (NM_124588) putative protein [Arabidopsis thaliana]
dbj|BAB11057.1| (AB015478) contains similarity to nonsense-mediated mRNA decay
trans-acting factor~gene_id:MSG15.19 [Arabidopsis
thaliana]
Length = 676
Score = 65.5 bits (158), Expect = 9e-10
Identities = 75/302 (24%), Positives = 133/302 (43%), Gaps = 42/302 (13%)
Query: 42 LRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKER-IILVGD 100
L++ + + +G +ER T + ++VDEAA+ E + + L R IL+GD
Sbjct: 340 LQNADIILCTASGAAEMNVER--TGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGD 397
Query: 101 DRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNM 160
+ QLP + +E+ +K + S+F++L LD +
Sbjct: 398 EFQLPAMVHNEMCEKAK-------------FGRSLFERLVLLGHNKHLLD---------V 435
Query: 161 QYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKE 220
QY MHP + + FY + E+ +K +++ K N+ D+ ++I+V KE
Sbjct: 436 QYRMHPSISRFPNKEFYGGRIKDAEN-VKESIYQKRFLKGNM--FDS--FSFINVGRGKE 490
Query: 221 KRNADGSYYRESEITAIKECLDLFMKDEPD----FTFGVITFFSEQKRLLEQ-------A 269
+ S E+ I E + K + + GV++ + Q R +++ +
Sbjct: 491 EFGDGHSPKNMVEVAVISEIISNLYKVSCERRMKVSVGVVSPYKGQMRAIQEKIGDKYSS 550
Query: 270 LKGYA-NLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVA 328
L G L + +VD FQG E D++ +S+VR+ GFL VAL+R + L V
Sbjct: 551 LSGQQFTLNVRSVDGFQGGEEDIIIISTVRSNGNGKVGFLNNRQRANVALTRARHCLWVI 610
Query: 329 GD 330
G+
Sbjct: 611 GN 612
>gb|AAA70430.1| (L24544) DNA helicase [Homo sapiens]
Length = 993
Score = 65.1 bits (157), Expect = 1e-09
Identities = 86/305 (28%), Positives = 126/305 (41%), Gaps = 42/305 (13%)
Query: 38 LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKER-II 96
LESL + +NT + L+ YFD V++DE A+A LE + L K R I
Sbjct: 339 LESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQA--LEASCWIPLLKARKCI 396
Query: 97 LVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFI 156
L GD +QLP KA + L ER L E G
Sbjct: 397 LAGDHKQLP-----------------PTTVSHKAALAGLSLSLMER---LAEEYGARVVR 436
Query: 157 TLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHL----------EEKPFKHNLRVLD 206
TL +QY MH + SD Y + S +HL EE L ++D
Sbjct: 437 TLTVQYRMHQAIMRWASDTMYLGQLTAHSSV--ARHLLRDLPGVAATEETGVP--LLLVD 492
Query: 207 NKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLL 266
+++E E+ + R + I+ +D + P V++ ++ Q LL
Sbjct: 493 TAGCGLFELEEEDEQSKGNPGEVRLVSLH-IQALVDAGV---PARDIAVVSPYNLQVDLL 548
Query: 267 EQAL-KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRAL 325
Q+L + LEI +VD FQG+E + V LS VR+ GFL + VA++R +R +
Sbjct: 549 RQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHV 608
Query: 326 IVAGD 330
V D
Sbjct: 609 AVICD 613
>ref|XP_165600.1| (XM_165600) immunoglobulin mu binding protein 2 [Homo sapiens]
Length = 993
Score = 65.1 bits (157), Expect = 1e-09
Identities = 86/305 (28%), Positives = 126/305 (41%), Gaps = 42/305 (13%)
Query: 38 LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKER-II 96
LESL + +NT + L+ YFD V++DE A+A LE + L K R I
Sbjct: 339 LESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQA--LEASCWIPLLKARKCI 396
Query: 97 LVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFI 156
L GD +QLP KA + L ER L E G
Sbjct: 397 LAGDHKQLP-----------------PTTVSHKAALAGLSLSLMER---LAEEYGARVVR 436
Query: 157 TLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHL----------EEKPFKHNLRVLD 206
TL +QY MH + SD Y + S +HL EE L ++D
Sbjct: 437 TLTVQYRMHQAIMRWASDTMYLGQLTAHSSV--ARHLLRDLPGVAATEETGVP--LLLVD 492
Query: 207 NKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLL 266
+++E E+ + R + I+ +D + P V++ ++ Q LL
Sbjct: 493 TAGCGLFELEEEDEQSKGNPGEVRLVSLH-IQALVDAGV---PARDIAVVSPYNLQVDLL 548
Query: 267 EQAL-KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRAL 325
Q+L + LEI +VD FQG+E + V LS VR+ GFL + VA++R +R +
Sbjct: 549 RQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHV 608
Query: 326 IVAGD 330
V D
Sbjct: 609 AVICD 613
>dbj|BAB08973.1| (AB024026) gb|AAD48967.1~gene_id:K15O15.6~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 536
Score = 65.1 bits (157), Expect = 1e-09
Identities = 74/289 (25%), Positives = 122/289 (41%), Gaps = 50/289 (17%)
Query: 60 LERKETPYFDSVIVDEAAKANPLELLMVMALAKER-IILVGDDRQLPHYLDDEIGKKLED 118
+ + T + ++VDEAA+ E + + L R IL+GD+ QLP + +
Sbjct: 238 INEERTGNIEVLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAMVHN-------- 289
Query: 119 ESQDAQDEIEKA-LKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFY 177
D+ EKA S+F++L K LD +QY MHP + FY
Sbjct: 290 ------DQCEKAKFGRSLFERLVLLGHKKHLLD---------VQYRMHPSISRFPYKEFY 334
Query: 178 ----KPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESE 233
K ES + + L+ F ++I+V KE+ S E
Sbjct: 335 GGRIKDAANVQESIYQKRFLQGNMFGS---------FSFINVGRGKEEFGDGDSPKNMVE 385
Query: 234 ITAIKECLDLFMKDEPD----FTFGVITFFSEQKRLLEQALKG-YANLE-------IGTV 281
+ + E + K + + GVIT + Q R +++ ++ Y++L + +V
Sbjct: 386 VAVVSEIISNLFKVSRERKMKMSVGVITPYKGQVRAIQERIRDKYSSLSGELFTVNVRSV 445
Query: 282 DSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
D FQG E D++ +S+VR+ GFL VAL+R + L V G+
Sbjct: 446 DGFQGGEEDIIIISTVRSNSNGKVGFLSNRQRANVALTRARHCLWVIGN 494
>ref|NP_198446.1| (NM_122988) DNA helicase-like [Arabidopsis thaliana]
dbj|BAB09253.1| (AB026643) DNA helicase-like [Arabidopsis thaliana]
Length = 750
Score = 65.1 bits (157), Expect = 1e-09
Identities = 86/328 (26%), Positives = 137/328 (41%), Gaps = 45/328 (13%)
Query: 21 IRVLLEYI--SVLERTPWDLESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAK 78
IR LL+ + ++ ++ ++ +L + VF+ G + + R ET FD V++DEA +
Sbjct: 404 IRQLLKQLGKTLKKKEKETVKEILSNAQVVFATNIGAADPLIRRLET--FDLVVIDEAGQ 461
Query: 79 ANPLELLMVMALAKERIILVGDDRQL-PHYLDDEIGKKLEDESQDAQDEIEKALKDSMFK 137
+ + L +R IL GD QL P L KAL+ +
Sbjct: 462 SIEPSC-WIPILQGKRCILSGDPCQLAPVVLS------------------RKALEGGLGV 502
Query: 138 KLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLE-EK 196
L ERA L DG L QY M+ ++ S Y +S +P HL +
Sbjct: 503 SLLERAASLH--DGVLA-TKLTTQYRMNDVIAGWASKEMYGGWLKS--APSVASHLLIDS 557
Query: 197 PFKHNLRVLDNKPLAWIDVK----------ESKEKRNADGSYYRESEIT-AIKECLDLFM 245
PF + PL +D + E + GS Y E E + + L
Sbjct: 558 PFV-KATWITQCPLVLLDTRMPYGSLSVGCEERLDPAGTGSLYNEGEADIVVNHVISLIY 616
Query: 246 KDEPDFTFGVITFFSEQKRLLEQALKGYA---NLEIGTVDSFQGKEFDVVFLSSVRTRHT 302
V + + Q +LL + L + +E+ T+DSFQG+E D V +S VR+ +
Sbjct: 617 AGVSPMAIAVQSPYVAQVQLLRERLDDFPVADGVEVATIDSFQGREADAVIISMVRSNNL 676
Query: 303 EGFGFLKISSCLCVALSRQKRALIVAGD 330
GFL S + VA++R ++ + V D
Sbjct: 677 GAVGFLGDSRRMNVAITRARKHVAVVCD 704
>ref|NP_002171.1| (NM_002180) immunoglobulin mu binding protein 2 [Homo sapiens]
sp|P38935|SMB2_HUMAN DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2)
(SMUBP-2) (Glial factor-1) (GF-1)
gb|AAA53082.1| (L14754) DNA-binding protein [Homo sapiens]
Length = 993
Score = 65.1 bits (157), Expect = 1e-09
Identities = 86/305 (28%), Positives = 126/305 (41%), Gaps = 42/305 (13%)
Query: 38 LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKER-II 96
LESL + +NT + L+ YFD V++DE A+A LE + L K R I
Sbjct: 339 LESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQA--LEASCWIPLLKARKCI 396
Query: 97 LVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFI 156
L GD +QLP KA + L ER L E G
Sbjct: 397 LAGDHKQLP-----------------PTTVSHKAALAGLSLSLMER---LAEEYGARVVR 436
Query: 157 TLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHL----------EEKPFKHNLRVLD 206
TL +QY MH + SD Y + S +HL EE L ++D
Sbjct: 437 TLTVQYRMHQAIMRWASDTMYLGQVTAHSSV--ARHLLRDLPGVAATEETGVP--LLLVD 492
Query: 207 NKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLL 266
+++E E+ + R + I+ +D + P V++ ++ Q LL
Sbjct: 493 TAGCGLFELEEEDEQSKGNPGEVRLVSLH-IQALVDAGV---PARDIAVVSPYNLQVDLL 548
Query: 267 EQAL-KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRAL 325
Q+L + LEI +VD FQG+E + V LS VR+ GFL + VA++R +R +
Sbjct: 549 RQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHV 608
Query: 326 IVAGD 330
V D
Sbjct: 609 AVICD 613
>pir||A47500 Ig mu chain switch region binding protein 2 - human
Length = 993
Score = 65.1 bits (157), Expect = 1e-09
Identities = 86/305 (28%), Positives = 126/305 (41%), Gaps = 42/305 (13%)
Query: 38 LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKER-II 96
LESL + +NT + L+ YFD V++DE A+A LE + L K R I
Sbjct: 339 LESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQA--LEASCWIPLLKARKCI 396
Query: 97 LVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFI 156
L GD +QLP KA + L ER L E G
Sbjct: 397 LAGDHKQLP-----------------PTTVSHKAALAGLSLSLMER---LAEEYGARVVR 436
Query: 157 TLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHL----------EEKPFKHNLRVLD 206
TL +QY MH + SD Y + S +HL EE L ++D
Sbjct: 437 TLTVQYRMHQAIMRWASDTMYLGQVTAHSSV--ARHLLRDLPGVAATEETGVP--LLLVD 492
Query: 207 NKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLL 266
+++E E+ + R + I+ +D + P V++ ++ Q LL
Sbjct: 493 TAGCGLFELEEEDEQSKGNPGEVRLVSLH-IQALVDAGV---PARDIAVVSPYNLQVDLL 548
Query: 267 EQAL-KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRAL 325
Q+L + LEI +VD FQG+E + V LS VR+ GFL + VA++R +R +
Sbjct: 549 RQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHV 608
Query: 326 IVAGD 330
V D
Sbjct: 609 AVICD 613
>ref|NP_597454.1| (NC_003232) similarity to HYPOTHETICAL ZINC FINGER PROTEINS
YDRD_SCHPO [Encephalitozoon cuniculi]
emb|CAD26631.1| (AL590445) similarity to HYPOTHETICAL ZINC FINGER PROTEINS
YDRD_SCHPO [Encephalitozoon cuniculi]
Length = 563
Score = 64.7 bits (156), Expect = 2e-09
Identities = 76/293 (25%), Positives = 120/293 (40%), Gaps = 71/293 (24%)
Query: 63 KETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQD 122
KE FD V+VDEA +A+ E + + + ILVGD QL +
Sbjct: 317 KEKRKFDWVLVDEACQASEAESFLAVVKGRA-FILVGDPMQL---------------CPE 360
Query: 123 AQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNE 182
E +M LN QY M L ++VFY+ +
Sbjct: 361 TSSLYESLALPTML---------------------LNEQYRMPSDLLRFSNEVFYRGQVK 399
Query: 183 SFE---SPLKGKHLEEKPFKHNLRVLDNKPLAWIDVK--ESKEKRNADGSYYRESEITAI 237
S +P+ GK + ++D + E E S E+EI +
Sbjct: 400 SATRECTPVFGKSF----------------ILFVDTQYFELYESGGVSKSNIGEAEI--V 441
Query: 238 KECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVFLSSV 297
+ + + +++ G+I ++ Q LL + + ++E+ TVD FQG+E D + L+ V
Sbjct: 442 RSIVGILKEEQ----VGIIAPYTSQVLLLREMV----DVEVSTVDGFQGQERDYIILTLV 493
Query: 298 RTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFL 350
R + FGFL L VAL+R ++ L++ GD F E+ K LF FL
Sbjct: 494 RCNDRDDFGFLDNGKRLNVALTRCRKGLVIVGDSRTFRRSETFRK---LFRFL 543
>ref|NP_198519.1| (NM_123061) SEN1-like protein [Arabidopsis thaliana]
Length = 638
Score = 64.3 bits (155), Expect = 2e-09
Identities = 74/285 (25%), Positives = 121/285 (41%), Gaps = 50/285 (17%)
Query: 64 ETPYFDSVIVDEAAKANPLELLMVMALAKER-IILVGDDRQLPHYLDDEIGKKLEDESQD 122
+T + ++VDEAA+ E + + L R IL+GD+ QLP + +
Sbjct: 344 KTGNIEVLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAMVHN------------ 391
Query: 123 AQDEIEKA-LKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFY---- 177
D+ EKA S+F++L K LD +QY MHP + FY
Sbjct: 392 --DQCEKAKFGRSLFERLVLLGHKKHLLD---------VQYRMHPSISRFPYKEFYGGRI 440
Query: 178 KPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAI 237
K ES + + L+ F ++I+V KE+ S E+ +
Sbjct: 441 KDAANVQESIYQKRFLQGNMFGS---------FSFINVGRGKEEFGDGDSPKNMVEVAVV 491
Query: 238 KECLDLFMKDEPD----FTFGVITFFSEQKRLLEQALKG-YANLE-------IGTVDSFQ 285
E + K + + GVIT + Q R +++ ++ Y++L + +VD FQ
Sbjct: 492 SEIISNLFKVSRERKMKMSVGVITPYKGQVRAIQERIRDKYSSLSGELFTVNVRSVDGFQ 551
Query: 286 GKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
G E D++ +S+VR+ GFL VAL+R + L V G+
Sbjct: 552 GGEEDIIIISTVRSNSNGKVGFLSNRQRANVALTRARHCLWVIGN 596
>gb|AAK40099.1|AF339908_1 (AF339908) RNA helicase SDE3 [Arabidopsis thaliana]
Length = 1002
Score = 64.3 bits (155), Expect = 2e-09
Identities = 76/310 (24%), Positives = 140/310 (44%), Gaps = 41/310 (13%)
Query: 38 LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMA---LAKER 94
L++L R Y V S E + +F +++DEA +A+ E ++ ++ L +
Sbjct: 510 LKALTR-YKLVVSTYMSASLLNAEGVKRGHFTHILLDEAGQASEPENMIAVSNLCLTETV 568
Query: 95 IILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKEC 154
++L GD RQL + S+DA+ L S ++L E +G E
Sbjct: 569 VVLAGDPRQLGPVI----------YSRDAES---LGLGKSYLERLFECDYYC---EGDEN 612
Query: 155 FIT-LNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNK--PLA 211
++T L Y HP + +L S +FY + L E +L L NK P+
Sbjct: 613 YVTKLVKNYRCHPEILDLPSKLFY-------DGELVASKEETDSVLASLNFLPNKEFPMV 665
Query: 212 WIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDE--PDFTFGVITFFSEQKRLLEQA 269
+ ++ E+ + S++ EI+ + E + ++ + GVIT + +Q +++
Sbjct: 666 FYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEV 725
Query: 270 LK--GYANLEIGTVDSFQGKEFDVVFLSSVRT--RHTE-----GFGFLKISSCLCVALSR 320
L +++G+V+ FQG+E V+ +S+VR+ +H E GFL VA++R
Sbjct: 726 LDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITR 785
Query: 321 QKRALIVAGD 330
L++ G+
Sbjct: 786 AISLLVIIGN 795
>ref|NP_198530.1| (NM_123073) sen1-like protein [Arabidopsis thaliana]
Length = 692
Score = 63.9 bits (154), Expect = 3e-09
Identities = 75/305 (24%), Positives = 127/305 (41%), Gaps = 53/305 (17%)
Query: 42 LRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKER-IILVGD 100
L++ + +F +G + R T D ++VDEAA+ E + + L+ R +L+GD
Sbjct: 361 LQNADIIFCTASGAADMNPIR--TGSVDLLVVDEAAQLKECESVAALQLSGLRHAVLIGD 418
Query: 101 DRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNM 160
+ QLP + +E S+F++L K L LN+
Sbjct: 419 ELQLPAMVHNEA-----------------KFGRSLFERLVLLGHN-KHL--------LNV 452
Query: 161 QYGMHPLLGELVSDVFY----KPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVK 216
QY MHP + + FY K ES + + L+ F ++I+V
Sbjct: 453 QYRMHPSISRFPNKEFYGGRIKDAANVQESIYQKRFLQGNMFGS---------FSFINVG 503
Query: 217 ESKEKRNADGSYYRESEITAIKECLDLFMKDEPD----FTFGVITFFSEQKRLLEQ---- 268
+E+ S E+ I E + K + + GV++ + Q R +++
Sbjct: 504 RGEEEFGDGHSPKNMVEVAVISEIISNLFKVSSERRIKMSVGVVSPYKGQVRAIQERTTN 563
Query: 269 ---ALKGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRAL 325
+L G L + +VD FQG E D++ +S+VR+ GFL VAL+R + L
Sbjct: 564 KYSSLSGLFTLNVRSVDGFQGGEEDIIIISTVRSNGNGKVGFLNNRQRANVALTRARHCL 623
Query: 326 IVAGD 330
V G+
Sbjct: 624 WVIGN 628
>ref|NP_506213.1| (NM_073812) NAM7 like protein [Caenorhabditis elegans]
pir||T19948 hypothetical protein C44H9.4 - Caenorhabditis elegans
emb|CAA99786.1| (Z75529) Similarity to C.elegans NAM7 protein (WP:C05C10.2)~cDNA EST
yk239g7.3 comes from this gene~cDNA EST yk239g7.5 comes
from this gene [Caenorhabditis elegans]
Length = 1106
Score = 63.5 bits (153), Expect = 4e-09
Identities = 70/305 (22%), Positives = 128/305 (41%), Gaps = 34/305 (11%)
Query: 46 NFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVM-ALAKERIILVGDDRQL 104
+ + S HN LE ++ DEA++ L+ ++ LVGD QL
Sbjct: 726 DIIVSTADSIHN-LLENNVLRDVSNIQFDEASQVPEHTLISLLHKFPNASFGLVGDINQL 784
Query: 105 PHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGM 164
P Y DD++ L+D + +A +D MF + L + Y
Sbjct: 785 PAYCDDDLQGLLKD--YGIGKTMARASRDKMFPQ-----------------SILRLVYRC 825
Query: 165 HPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNA 224
HP +++SD+FY N S ++ K+ ++ + + N + + K+
Sbjct: 826 HPTTTKILSDLFY---NGQLISGVE-KNQRDEFMRMRPDIWPNSSFPILVLNHEKDGYRM 881
Query: 225 DGSYYRESEITAIKECLDLFMKDEPDF-----TFGVITFFSEQKRLLEQALKGYANLEIG 279
S SE + + L K + G+I+F+ Q LL ALK +++ G
Sbjct: 882 GTSVANNSEKDQVVRIVSLLTKKVKGYGLSESDIGIISFYKAQTSLLADALK-KTDVKCG 940
Query: 280 TVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPES 339
T+D+FQG E +V+ + + F++ + + VA+SR ++A I+ G+ K +
Sbjct: 941 TIDAFQGTEREVMIVCCTNKNPSL---FMQEGTRVNVAMSRARQATIIIGNIAKLKKAKH 997
Query: 340 KDKVS 344
D ++
Sbjct: 998 WDTIA 1002
>ref|NP_198531.1| (NM_123074) sen1-like protein [Arabidopsis thaliana]
Length = 839
Score = 63.5 bits (153), Expect = 4e-09
Identities = 72/302 (23%), Positives = 131/302 (42%), Gaps = 42/302 (13%)
Query: 42 LRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKER-IILVGD 100
L++ + + +G +ER T + ++VDEAA+ E + + L R IL+GD
Sbjct: 503 LQNADIILCTASGAAEMNVER--TGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGD 560
Query: 101 DRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNM 160
+ QLP + +E+ +K + S+F++L LD +
Sbjct: 561 EFQLPAMVHNEMCEKAK-------------FGRSLFERLVLLGHNKHLLD---------V 598
Query: 161 QYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKE 220
QY MHP + + FY + E+ +K +++ + N+ ++I+V KE
Sbjct: 599 QYRMHPSISRFPNKEFYGGRIKDAEN-VKESIYQKRFLQGNMF----GSFSFINVGRGKE 653
Query: 221 KRNADGSYYRESEITAIKECLDLFMKDEPD----FTFGVITFFSEQKRLLEQ-------A 269
+ S E+ + E + K + + GV++ + Q R +++ +
Sbjct: 654 EFGDGHSPKNMVEVAVVSEIISNLFKVSCERRMKVSVGVVSPYKGQMRAIQEKIGDKYSS 713
Query: 270 LKGYA-NLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVA 328
L G L + +VD FQG E D++ +S+VR+ GFL VAL+R + L V
Sbjct: 714 LSGQQFTLNVRSVDGFQGGEEDIIIISTVRSNSNGKVGFLNNRQRANVALTRARHCLWVI 773
Query: 329 GD 330
G+
Sbjct: 774 GN 775
>ref|NP_495964.1| (NM_063563) ZK1067.2.p [Caenorhabditis elegans]
pir||T27684 hypothetical protein ZK1067.2 - Caenorhabditis elegans
emb|CAA93884.1| (Z70038) cDNA EST yk19a4.3 comes from this gene~cDNA EST yk19a4.5
comes from this gene~cDNA EST yk224b3.5 comes from this
gene~cDNA EST yk357f10.5 comes from this gene~cDNA EST
yk518c10.5 comes from this gene [Caenorhabditis elegans]
Length = 2219
Score = 63.2 bits (152), Expect = 5e-09
Identities = 69/291 (23%), Positives = 123/291 (41%), Gaps = 82/291 (28%)
Query: 71 VIVDEAAKANPLELLMVMALAKERIILVGDDRQL-PHYLDDEIGKKLEDESQDAQDEIEK 129
+IV+EAA+ ++ M E ++++GD +QL P+ E+G +
Sbjct: 1233 LIVEEAAEVLEAHIISAMISTVEHVVMIGDHKQLRPNPAVHELG-------------VAY 1279
Query: 130 ALKDSMFKKLKERAQKLKELDGKECF----------------ITLNMQYGMHPLLGELVS 173
L+ SMF++L ER +L + +T G++P + + +
Sbjct: 1280 GLRISMFERLVERGLPFSQLRQQHRMNLTISDKIVKLSFYDNVTDAENVGLYPDVQGMAT 1339
Query: 174 DVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESE 233
++F+ H ESP + L KH + + + + + K+N Y ++
Sbjct: 1340 NLFFWSHTSMEESPDEVSWLN----KHEISMT-------VALVKHLLKQN-----YTTND 1383
Query: 234 ITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYAN----------LEIGTVDS 283
I V+ +S QK L+ + YAN + + TVDS
Sbjct: 1384 IV-------------------VLATYSAQKNLM---YREYANVFGSTPDSNVIPVETVDS 1421
Query: 284 FQGKEFDVVFLSSVRT----RHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
FQGKE +V +S VR+ R G GFL +++ +CVAL+R + + + G+
Sbjct: 1422 FQGKERKIVIVSLVRSHRGGRENTGIGFLAVANRICVALTRAQHGMYIIGN 1472
>ref|NP_586281.1| (NC_003236) INVOLVED IN mRNA DECAY CONTROL (DNA2/NAM7 HELICASE
FAMILY) [Encephalitozoon cuniculi]
emb|CAD25885.1| (AL590449) INVOLVED IN mRNA DECAY CONTROL (DNA2/NAM7 HELICASE
FAMILY) [Encephalitozoon cuniculi]
Length = 782
Score = 63.2 bits (152), Expect = 5e-09
Identities = 69/268 (25%), Positives = 121/268 (44%), Gaps = 41/268 (15%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQL-PHYLDDEIGKKLEDESQDAQDE 126
F V++DEA ++ L+ + ++++LVGD +QL P L ++
Sbjct: 496 FHCVLIDEAVQSTEPLSLIPLVYGCKKLVLVGDHKQLGPTILCKKVA------------- 542
Query: 127 IEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFES 186
+ K S+F++L + L++QY M L E S++FY E
Sbjct: 543 -QAGFKQSLFERL---------ISIGVVPYMLSVQYRMDADLCEWPSEMFYNG-----EL 587
Query: 187 PLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADG-SYYRESEITAIKECL-DLF 244
GK+ + +L + P+ + V +E+ +A G S+ ++E + + LF
Sbjct: 588 LTGGKNF----CRFDLGI----PVNFFYVCYGREEVSASGTSFVNQAEALYCESIIRHLF 639
Query: 245 MKDEPDFTFGVITFFSEQKRLLEQALKGY--ANLEIGTVDSFQGKEFDVVFLSSVRTRHT 302
+ GVIT + Q+ + + G NLEI VD FQG+E D + +S VR+
Sbjct: 640 KCGVTESQIGVITPYEGQRSYILNRIFGAEPGNLEISNVDGFQGREKDFIIVSLVRSNLY 699
Query: 303 EGFGFLKISSCLCVALSRQKRALIVAGD 330
+G GF+ + V L+R K L++ G+
Sbjct: 700 QGIGFVGDKRRMNVTLTRAKHGLVIIGN 727
>ref|NP_172037.1| (NM_100425) hypothetical protein [Arabidopsis thaliana]
Length = 1002
Score = 62.8 bits (151), Expect = 6e-09
Identities = 75/310 (24%), Positives = 139/310 (44%), Gaps = 41/310 (13%)
Query: 38 LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMA---LAKER 94
L++L R Y V S E +F +++DEA +A+ E ++ ++ L +
Sbjct: 510 LKALTR-YKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETV 568
Query: 95 IILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKEC 154
++L GD RQL + S+DA+ L S ++L E +G E
Sbjct: 569 VVLAGDPRQLGPVI----------YSRDAES---LGLGKSYLERLFECDYYC---EGDEN 612
Query: 155 FIT-LNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNK--PLA 211
++T L Y HP + +L S +FY + L + +L L NK P+
Sbjct: 613 YVTKLVKNYRCHPEILDLPSKLFY-------DGELVASKEDTDSVLASLNFLPNKEFPMV 665
Query: 212 WIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDE--PDFTFGVITFFSEQKRLLEQA 269
+ ++ E+ + S++ EI+ + E + ++ + GVIT + +Q +++
Sbjct: 666 FYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEV 725
Query: 270 LK--GYANLEIGTVDSFQGKEFDVVFLSSVRT--RHTE-----GFGFLKISSCLCVALSR 320
L +++G+V+ FQG+E V+ +S+VR+ +H E GFL VA++R
Sbjct: 726 LDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITR 785
Query: 321 QKRALIVAGD 330
L++ G+
Sbjct: 786 AISLLVIIGN 795
>gb|AAF79736.1|AC005106_17 (AC005106) T25N20.11 [Arabidopsis thaliana]
Length = 1048
Score = 62.8 bits (151), Expect = 6e-09
Identities = 75/310 (24%), Positives = 139/310 (44%), Gaps = 41/310 (13%)
Query: 38 LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMA---LAKER 94
L++L R Y V S E +F +++DEA +A+ E ++ ++ L +
Sbjct: 556 LKALTR-YKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETV 614
Query: 95 IILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKEC 154
++L GD RQL + S+DA+ L S ++L E +G E
Sbjct: 615 VVLAGDPRQLGPVI----------YSRDAES---LGLGKSYLERLFECDYYC---EGDEN 658
Query: 155 FIT-LNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNK--PLA 211
++T L Y HP + +L S +FY + L + +L L NK P+
Sbjct: 659 YVTKLVKNYRCHPEILDLPSKLFY-------DGELVASKEDTDSVLASLNFLPNKEFPMV 711
Query: 212 WIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDE--PDFTFGVITFFSEQKRLLEQA 269
+ ++ E+ + S++ EI+ + E + ++ + GVIT + +Q +++
Sbjct: 712 FYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEV 771
Query: 270 LK--GYANLEIGTVDSFQGKEFDVVFLSSVRT--RHTE-----GFGFLKISSCLCVALSR 320
L +++G+V+ FQG+E V+ +S+VR+ +H E GFL VA++R
Sbjct: 772 LDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITR 831
Query: 321 QKRALIVAGD 330
L++ G+
Sbjct: 832 AISLLVIIGN 841
>ref|NP_113774.1| (NM_031586) immunoglobulin S mu binding protein 2 [Rattus
norvegicus]
gb|AAG28561.1|AF199411_1 (AF199411) antifreeze-enhancer binding protein AEP [Rattus
norvegicus]
Length = 988
Score = 62.0 bits (149), Expect = 1e-08
Identities = 77/291 (26%), Positives = 120/291 (40%), Gaps = 38/291 (13%)
Query: 50 SNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKE-RIILVGDDRQLPHYL 108
+NT + L+ YFD V+VDE A+A LE + L K + IL GD +QLP
Sbjct: 350 TNTGASTDGPLKLLPEDYFDVVVVDECAQA--LEASCWIPLLKAPKCILAGDHKQLP--- 404
Query: 109 DDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLL 168
KA + + L ER L E G L +QY MH +
Sbjct: 405 --------------PTTVSHKAALAGLSRSLMER---LAEKHGAAVVRMLAVQYRMHQAI 447
Query: 169 GELVSDVFYKPHNESFESPLKGKHL--------EEKPFKHNLRVLDNKPLAWIDVKESKE 220
S+ Y H + P HL + + L ++D ++++E
Sbjct: 448 TRWASEAMY--HGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDTAGCGLLELEEEDS 505
Query: 221 KRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKG-YANLEIG 279
+ + R + I+ +D ++ VI ++ Q LL Q+L + LEI
Sbjct: 506 QSKGNPGEVRLVTLH-IQALVDAGVQAGD---IAVIAPYNLQVDLLRQSLSNKHPELEIK 561
Query: 280 TVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
+VD FQG+E + V L+ VR+ GFL + VA++R +R + V D
Sbjct: 562 SVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICD 612
>ref|XP_123344.1| (XM_123344) similar to immunoglobulin S mu binding protein 2;
antifreeze enhancer-binding protein [Mus musculus]
Length = 993
Score = 62.0 bits (149), Expect = 1e-08
Identities = 77/291 (26%), Positives = 121/291 (41%), Gaps = 38/291 (13%)
Query: 50 SNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKE-RIILVGDDRQLPHYL 108
+NT + L+ YFD V+VDE A+A LE + L K + IL GD RQLP
Sbjct: 350 TNTGASSDGPLKLLPEDYFDVVVVDECAQA--LEASCWIPLLKAPKCILAGDHRQLP--- 404
Query: 109 DDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLL 168
+A + + L ER L E G L +QY MH +
Sbjct: 405 --------------PTTVSHRAALAGLSRSLMER---LAEKHGAGVVRMLTVQYRMHQAI 447
Query: 169 GELVSDVFYKPHNESFESPLKGKHL--------EEKPFKHNLRVLDNKPLAWIDVKESKE 220
S+ Y H + P HL + + + L ++D ++++E
Sbjct: 448 MCWASEAMY--HGQLTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDTAGCGLLELEEEDS 505
Query: 221 KRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKG-YANLEIG 279
+ + R + I+ +D ++ VI ++ Q LL Q+L + LEI
Sbjct: 506 QSKGNPGEVRLVTLH-IQALVDAGVQAGD---IAVIAPYNLQVDLLRQSLSNKHPELEIK 561
Query: 280 TVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
+VD FQG+E + V L+ VR+ GFL + VA++R +R + V D
Sbjct: 562 SVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICD 612
>ref|NP_033238.1| (NM_009212) immunoglobulin S mu binding protein 2; antifreeze
enhancer-binding protein [Mus musculus]
sp|P40694|SMB2_MOUSE DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2)
(SMUBP-2) (Cardiac transcription factor 1) (CATF1)
pir||S35633 DNA-binding protein - mouse
gb|AAA40143.1| (L10075) DNA-binding protein [Mus musculus]
Length = 993
Score = 62.0 bits (149), Expect = 1e-08
Identities = 77/291 (26%), Positives = 121/291 (41%), Gaps = 38/291 (13%)
Query: 50 SNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKE-RIILVGDDRQLPHYL 108
+NT + L+ YFD V+VDE A+A LE + L K + IL GD RQLP
Sbjct: 350 TNTGASSDGPLKLLPEDYFDVVVVDECAQA--LEASCWIPLLKAPKCILAGDHRQLP--- 404
Query: 109 DDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLL 168
+A + + L ER L E G L +QY MH +
Sbjct: 405 --------------PTTVSHRAALAGLSRSLMER---LAEKHGAGVVRMLTVQYRMHQAI 447
Query: 169 GELVSDVFYKPHNESFESPLKGKHL--------EEKPFKHNLRVLDNKPLAWIDVKESKE 220
S+ Y H + P HL + + + L ++D ++++E
Sbjct: 448 MCWASEAMY--HGQFTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDTAGCGLLELEEEDS 505
Query: 221 KRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKG-YANLEIG 279
+ + R + I+ +D ++ VI ++ Q LL Q+L + LEI
Sbjct: 506 QSKGNPGEVRLVTLH-IQALVDAGVQAGD---IAVIAPYNLQVDLLRQSLSNKHPELEIK 561
Query: 280 TVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
+VD FQG+E + V L+ VR+ GFL + VA++R +R + V D
Sbjct: 562 SVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICD 612
>ref|NP_492670.1| (NM_060269) Y106G6D.5.p [Caenorhabditis elegans]
pir||T26415 hypothetical protein Y106G6D.5 - Caenorhabditis elegans
emb|CAA20978.1| (AL031629) cDNA EST EMBL:T00167 comes from this gene~cDNA EST
yk384f3.3 comes from this gene~cDNA EST yk287a1.5 comes
from this gene~cDNA EST yk384f3.5 comes from this gene
[Caenorhabditis elegans]
Length = 693
Score = 61.6 bits (148), Expect = 1e-08
Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 39/274 (14%)
Query: 69 DSVIVDEAAKAN-PLELLMVMALAK-ERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDE 126
D +IVDEAA+ P + V+ +++ILVGD +QLP + L D++
Sbjct: 401 DVMIVDEAAQCTEPATWVPVLTTPSCKKLILVGDQKQLPAVV-------LSDKAMKGN-- 451
Query: 127 IEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYK----PHNE 182
K S+ +KL E E I LN QY M+ + ++VFY+ H+
Sbjct: 452 ----FKLSLMEKLAE------EFSSNNINILLNEQYRMNKKIMNWSNEVFYENQLTAHST 501
Query: 183 SFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNAD---GSYYRESEITAIKE 239
+ L+ P H L N P+ I+++ K++ + + S+ E+ + E
Sbjct: 502 VSDITLRDI-CPNLPEDHVL----NNPIMMINMENVKDRSHEEFESHSFTNTDELNLVTE 556
Query: 240 CLDLFMKD---EPDFTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVFLSS 296
++ + D P VI+ + Q L +++ +++ TVD+FQG E VV
Sbjct: 557 YVNRLVVDLGINPK-AIAVISPYYAQIEKLRRSIP--FRVDVNTVDAFQGHERQVVIFCL 613
Query: 297 VRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
VR GFL + L VA++R +R ++ G+
Sbjct: 614 VRDNDEGQIGFLNETRRLNVAVTRARRQFVLIGN 647
>ref|NP_619643.1| (NM_138698) prematurely terminated mRNA decay factor-like [Homo
sapiens]
pir||T46441 hypothetical protein DKFZp434C0927.1 - human
emb|CAB70881.1| (AL137700) hypothetical protein [Homo sapiens]
Length = 239
Score = 60.8 bits (146), Expect = 2e-08
Identities = 57/188 (30%), Positives = 82/188 (43%), Gaps = 32/188 (17%)
Query: 156 ITLNMQYGMHPLLGELVSDVFYKPH-----NESFESPLKGKHLEEKPFKHNLRVLDNKPL 210
I L QY HP + + +D+FYK E SPL LE P L
Sbjct: 6 ILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPL----LEWLP-----------TL 50
Query: 211 AWIDVKESKEKRNADGSYYRESEIT-AIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQA 269
+ +VK E+ D S++ +E T +K L GVIT + Q L
Sbjct: 51 CFYNVK-GLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHL 109
Query: 270 LKGY-------ANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQK 322
L +++ TVD+FQG E +++ LS VRTR GF+ + VAL+R K
Sbjct: 110 LSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQV---GFIDSEKRMNVALTRGK 166
Query: 323 RALIVAGD 330
R L++ G+
Sbjct: 167 RHLLIVGN 174
>sp|Q60560|SMB2_MESAU DNA-BINDING PROTEIN SMUBP-2 (IMMUNOGLOBULIN MU BINDING PROTEIN 2)
(SMUBP-2) (INSULIN II GENE ENHANCER-BINDING PROTEIN)
(RIPE3B-BINDING COMPLEX 3B2 P110 SUBUNIT) (RIP-1)
pir||T48845 insulin II gene enhancer-binding protein rip1 [validated] - golden
hamster
gb|AAB00104.1| (L15625) insulin II gene enhancer-binding protein [Mesocricetus
auratus]
Length = 989
Score = 60.8 bits (146), Expect = 2e-08
Identities = 81/293 (27%), Positives = 120/293 (40%), Gaps = 42/293 (14%)
Query: 50 SNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKE-RIILVGDDRQLPHYL 108
+NT + L+ +FD V+VDE A+A LE + L K + IL GD RQLP
Sbjct: 350 TNTGASSDGPLKLLPENHFDVVVVDECAQA--LEASCWIPLLKAPKCILAGDHRQLPPTT 407
Query: 109 DDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLL 168
KA + + L ER L E G L +QY MH +
Sbjct: 408 ISH-----------------KAALAGLSRSLMER---LVEKHGAGAVRMLTVQYRMHQAI 447
Query: 169 GELVSDVFYKPHNESFESPLKGKHL--------EEKPFKHNLRVLDNKP--LAWIDVKES 218
S+ Y H + P HL + + L ++D L +D ++S
Sbjct: 448 TRWASEAMY--HGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDTAGCGLLELDEEDS 505
Query: 219 KEKRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKG-YANLE 277
+ K N I A+ + + D VI ++ Q LL Q+L + LE
Sbjct: 506 QSKGNPGEVRLVTLHIQALVDA-GVHAGD-----IAVIAPYNLQVDLLRQSLSNKHPELE 559
Query: 278 IGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
I +VD FQG+E + V L+ VR+ GFL + VA++R +R + V D
Sbjct: 560 IKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICD 612
>ref|NP_229212.1| (NC_000853) helicase-related protein [Thermotoga maritima]
pir||D72258 helicase-related protein - Thermotoga maritima (strain MSB8)
gb|AAD36482.1|AE001793_12 (AE001793) helicase-related protein [Thermotoga maritima]
Length = 245
Score = 60.1 bits (144), Expect = 4e-08
Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 9/127 (7%)
Query: 210 LAWIDVKESKEK--RNADGSYYRESEITA--IKECLD--LFMKDEPDFTFGVITFFSEQK 263
L +ID K ++ R S RE+ + A +KE ++ L M + D+ G+IT + +Q
Sbjct: 96 LVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDW-IGIITPYDDQV 154
Query: 264 RLLEQALKGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKR 323
L+ + ++ A +E+ +VD FQG+E +V+ +S VR+ GFL+ L V+L+R KR
Sbjct: 155 NLIRELIE--AKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLTRAKR 212
Query: 324 ALIVAGD 330
LI GD
Sbjct: 213 KLIATGD 219
>gb|AAF47775.1| (AE003478) CG11513 gene product [Drosophila melanogaster]
Length = 1274
Score = 59.7 bits (143), Expect = 5e-08
Identities = 67/287 (23%), Positives = 125/287 (43%), Gaps = 33/287 (11%)
Query: 67 YFDSVIVDEAAKAN-PLELLMVMALAKER--IILVGDDRQLPHYLDDEIGKKLEDESQDA 123
+F V+ DEA + P ++ ++ L K+R ++L GD RQL + I K+
Sbjct: 941 HFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISF- 999
Query: 124 QDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMH--PLLGELVSDVFYKPHN 181
+E+ L+ S ++K Q+ E G + + Y P + + S +FY +
Sbjct: 1000 ---LERLLERSPYRK---DLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFY---D 1050
Query: 182 ESFESPLKGKHLEEKPFKHNLRVLDNK----PLA----WIDVKESKEKRNADGSYYRESE 233
+ L K E LR + P A + + + N S++ E
Sbjct: 1051 DELIPVLSEKDSRESRLLSKLRCVFESEKDIPQAHGTFFYGIIGENRQNNDSPSWFNPQE 1110
Query: 234 ITAI-KECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYANL--EIGTVDSFQGKEFD 290
+ + + L+ + G+IT + +Q ++L G + +IG+V+ FQG+E D
Sbjct: 1111 VREVFLMTIALYRANVTADQIGIITPYQKQVKMLRSMFIGTDVVMPKIGSVEEFQGQERD 1170
Query: 291 VVFLSSVRTRH-------TEGFGFLKISSCLCVALSRQKRALIVAGD 330
++ +S+VR+ GF++ S L VA+SR + +I+ G+
Sbjct: 1171 IILISTVRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGN 1217
>ref|NP_012034.1| (NC_001140) DNA replication helicase; Dna2p [Saccharomyces
cerevisiae]
sp|P38859|DNA2_YEAST DNA replication helicase DNA2
pir||S48904 probable purine nucleotide-binding protein YHR164c - yeast
(Saccharomyces cerevisiae)
gb|AAB68010.1| (U00027) Dna2p: DNA replication helicase [Saccharomyces cerevisiae]
Length = 1522
Score = 59.7 bits (143), Expect = 5e-08
Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 52/307 (16%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAK----ERIILVGDDRQLPHYLDDEIGKKLEDESQDA 123
FD VI+DEA+ ++ M +AL R I+VGD QLP + ++ +
Sbjct: 1180 FDYVILDEAS-----QISMPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARL-------- 1226
Query: 124 QDEIEKALKDSMFKKLKER-AQKLKEL--DGKEC--FITLN--------MQYGMHPLLGE 170
L++S+FK E+ + + EL + C +TL+ ++ G + + +
Sbjct: 1227 -----GGLEESLFKTFCEKHPESVAELTLQYRMCGDIVTLSNFLIYDNKLKCGNNEVFAQ 1281
Query: 171 LVS----DVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADG 226
+ + + NES S + + E K DN P D+ E EK N
Sbjct: 1282 SLELPMPEALSRYRNESANSKQWLEDILEPTRKVVFLNYDNCP----DIIEQSEKDNITN 1337
Query: 227 SYYRESEITAIKECLD-LFMKDEPDFTFGVITFFSEQKRLLEQALKG--YANLEIGTVDS 283
+ E+E+T +C++ + + P GV+T + Q RLL++ Y LEI T D
Sbjct: 1338 --HGEAELTL--QCVEGMLLSGVPCEDIGVMTLYRAQLRLLKKIFNKNVYDGLEILTADQ 1393
Query: 284 FQGKEFDVVFLSSV-RTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKF-DTPESKD 341
FQG++ + +S V R G LK + VA++R K LI+ G + PE K
Sbjct: 1394 FQGRDKKCIIISMVRRNSQLNGGALLKELRRVNVAMTRAKSKLIIIGSKSTIGSVPEIKS 1453
Query: 342 KVSGLFE 348
V+ L E
Sbjct: 1454 FVNLLEE 1460
>dbj|BAB11372.1| (AB017068) contains similarity to nonsense-mediated mRNA decay
trans-acting factors~gene_id:MJG14.22 [Arabidopsis
thaliana]
Length = 880
Score = 59.7 bits (143), Expect = 5e-08
Identities = 74/303 (24%), Positives = 130/303 (42%), Gaps = 35/303 (11%)
Query: 42 LRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKER-IILVGD 100
L++ + + +G +ER T + ++VDEAA+ E + + L R IL+GD
Sbjct: 535 LQNADIILCTASGAAEMNVER--TGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGD 592
Query: 101 DRQLPHYLDDEIGKKLEDESQDAQDEIEKA-LKDSMFKKLKERAQKLKELDGKECFITLN 159
+ QLP + +E EKA S+F++L LD
Sbjct: 593 EFQLPAMVHNEY-----CNMGIMWQMCEKAKFGRSLFERLVLLGHNKHLLD--------- 638
Query: 160 MQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESK 219
+QY MHP + + FY + E+ +K +++ + N+ ++I+V K
Sbjct: 639 VQYRMHPSISRFPNKEFYGGRIKDAEN-VKESIYQKRFLQGNM----FGSFSFINVGRGK 693
Query: 220 EKRNADGSYYRESEITAIKECLDLFMKDEPD----FTFGVITFFSEQKRLLEQ------- 268
E+ S E+ + E + K + + GV++ + Q R +++
Sbjct: 694 EEFGDGHSPKNMVEVAVVSEIISNLFKVSCERRMKVSVGVVSPYKGQMRAIQEKIGDKYS 753
Query: 269 ALKGYA-NLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIV 327
+L G L + +VD FQG E D++ +S+VR+ GFL VAL+R + L V
Sbjct: 754 SLSGQQFTLNVRSVDGFQGGEEDIIIISTVRSNSNGKVGFLNNRQRANVALTRARHCLWV 813
Query: 328 AGD 330
G+
Sbjct: 814 IGN 816
>ref|NP_112550.1| (NM_031260) Moloney leukemia virus 10-like 1 [Mus musculus]
gb|AAK31966.1|AF285587_1 (AF285587) MOV10-like 1 [Mus musculus]
Length = 1187
Score = 59.3 bits (142), Expect = 7e-08
Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 52/293 (17%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKE---RIILVGDDRQLPHYLDDEIGKKLEDESQDA 123
YF V VDEA +A+ E L+ + L + +I+L GD QL + +
Sbjct: 881 YFTHVFVDEAGQASEPECLIPLGLISDINGQIVLAGDPMQLGPVIKSRLA---------- 930
Query: 124 QDEIEKALKDSMFKKLKERAQKLKELDG-------KECFIT-LNMQYGMHPLLGELVSDV 175
+ L SM ++L R L++ + +T L Y H L L S +
Sbjct: 931 ---MAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVTKLVKNYRSHSALLALPSRL 987
Query: 176 FYKPHNESFESP------LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYY 229
FY E P L + L K F PL + V+ ++ + S++
Sbjct: 988 FYHRELEVCADPKVVTSLLGWEKLPRKGF----------PLIFHGVRGNEAREGRSPSWF 1037
Query: 230 RESEITAIKECLDLFMKDEPDFT----FGVITFFSEQKRLLEQALKGY--ANLEIGTVDS 283
+E + L + GVIT + +Q ++ L+ ++++G+V+
Sbjct: 1038 SPAEAVQVMRYCCLLARSVSSQVSSKDIGVITPYRKQVEKIKILLRNVDLTDIKVGSVEE 1097
Query: 284 FQGKEFDVVFLSSVRTRHTE------GFGFLKISSCLCVALSRQKRALIVAGD 330
FQG+E+ V+ +S+VR+ GFL S VA++R K LI+ G+
Sbjct: 1098 FQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIILGN 1150
>gb|AAK77049.1|AF340211_1 (AF340211) cardiac-specific RNA helicase [Mus musculus]
Length = 550
Score = 59.3 bits (142), Expect = 7e-08
Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 52/293 (17%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKE---RIILVGDDRQLPHYLDDEIGKKLEDESQDA 123
YF V VDEA +A+ E L+ + L + +I+L GD QL + +
Sbjct: 244 YFTHVFVDEAGQASEPECLIPLGLISDINGQIVLAGDPMQLGPVIKSRLA---------- 293
Query: 124 QDEIEKALKDSMFKKLKERAQKLKELDG-------KECFIT-LNMQYGMHPLLGELVSDV 175
+ L SM ++L R L++ + +T L Y H L L S +
Sbjct: 294 ---MAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVTKLVKNYRSHSALLALPSRL 350
Query: 176 FYKPHNESFESP------LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYY 229
FY E P L + L K F PL + V+ ++ + S++
Sbjct: 351 FYHRELEVCADPKVVTSLLGWEKLPRKGF----------PLIFHGVRGNEAREGRSPSWF 400
Query: 230 RESEITAIKECLDLFMKDEPDFT----FGVITFFSEQKRLLEQALKGY--ANLEIGTVDS 283
+E + L + GVIT + +Q ++ L+ ++++G+V+
Sbjct: 401 SPAEAVQVMRYCCLLARSVSSQVSSKDIGVITPYRKQVEKIKILLRNVDLTDIKVGSVEE 460
Query: 284 FQGKEFDVVFLSSVRTRHTE------GFGFLKISSCLCVALSRQKRALIVAGD 330
FQG+E+ V+ +S+VR+ GFL S VA++R K LI+ G+
Sbjct: 461 FQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIILGN 513
>ref|XP_122853.1| (XM_122853) Moloney leukemia virus 10-like 1 [Mus musculus]
Length = 1187
Score = 59.3 bits (142), Expect = 7e-08
Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 52/293 (17%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKE---RIILVGDDRQLPHYLDDEIGKKLEDESQDA 123
YF V VDEA +A+ E L+ + L + +I+L GD QL + +
Sbjct: 881 YFTHVFVDEAGQASEPECLIPLGLISDINGQIVLAGDPMQLGPVIKSRLA---------- 930
Query: 124 QDEIEKALKDSMFKKLKERAQKLKELDG-------KECFIT-LNMQYGMHPLLGELVSDV 175
+ L SM ++L R L++ + +T L Y H L L S +
Sbjct: 931 ---MAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVTKLVKNYRSHSALLALPSRL 987
Query: 176 FYKPHNESFESP------LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYY 229
FY E P L + L K F PL + V+ ++ + S++
Sbjct: 988 FYHRELEVCADPKVVTSLLGWEKLPRKGF----------PLIFHGVRGNEAREGRSPSWF 1037
Query: 230 RESEITAIKECLDLFMKDEPDFT----FGVITFFSEQKRLLEQALKGY--ANLEIGTVDS 283
+E + L + GVIT + +Q ++ L+ ++++G+V+
Sbjct: 1038 SPAEAVQVMRYCCLLARSVSSQVSSKDIGVITPYRKQVEKIKILLRNVDLTDIKVGSVEE 1097
Query: 284 FQGKEFDVVFLSSVRTRHTE------GFGFLKISSCLCVALSRQKRALIVAGD 330
FQG+E+ V+ +S+VR+ GFL S VA++R K LI+ G+
Sbjct: 1098 FQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIILGN 1150
>ref|NP_463348.1| (NC_003197) putative superfamily I DNA helicases [Salmonella
typhimurium LT2]
gb|AAL23307.1| (AE008910) putative superfamily I DNA helicases [Salmonella
typhimurium LT2]
Length = 1171
Score = 58.5 bits (140), Expect = 1e-07
Identities = 73/316 (23%), Positives = 132/316 (41%), Gaps = 39/316 (12%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDD----EIGKKLEDESQD 122
+ D +IVDEA + P ALAK+ ++ +GD Q+P +IG L ++
Sbjct: 690 FADLLIVDEAGQVLPEVAAASFALAKKALV-IGDTEQIPPIWSITPAIDIGNMLAEKILS 748
Query: 123 AQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNE 182
+ E K + +L + A + +C +Y P EL ++ H
Sbjct: 749 GSTQEEITEKYTAIAELGKSAASGSVMKIAQCA----SRYQYDP---ELARGMYLYEHRR 801
Query: 183 SFESPL--------KGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEI 234
F++ + GK L ++ + + + + ++ + + K + + GS Y E
Sbjct: 802 CFDNIIGYCNTLCYHGKLLPKRGCEESNLM---PAMGYLHI-DGKGELASSGSRYNLLEA 857
Query: 235 TAI-------KECLDLFMKDEPDFTFGVITFFSEQKRLLEQALK--------GYANLEIG 279
I ++ ++ G++T FS Q ++QAL +L +G
Sbjct: 858 ETIAAWLTDNQQSIEAHYGKSLHEVVGIVTPFSAQVPTIKQALDKQGISAGTNETSLTVG 917
Query: 280 TVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPES 339
TV S QG E +V S V ++H +G +S L VA+SR K + +V GD + F+ +
Sbjct: 918 TVHSLQGAERAIVIFSPVYSKHEDGAFIDSDNSMLNVAVSRAKDSFLVFGDMDLFEIQPA 977
Query: 340 KDKVSGLFEFLQSCKK 355
L ++L +K
Sbjct: 978 SSPRGLLAKYLFESEK 993
>gb|AAF80211.1|AF282853_19 (AF282853) Cag-omega [Helicobacter pylori]
Length = 127
Score = 58.5 bits (140), Expect = 1e-07
Identities = 41/109 (37%), Positives = 59/109 (53%), Gaps = 10/109 (9%)
Query: 252 TFGVITFFSEQKRLLEQALKGYA-----NLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFG 306
T G+IT ++ QKR L ++ Y L+I TVD+FQG+E D++ S+V+T
Sbjct: 23 TIGIITPYNAQKRRLRSEVEKYGFKNFDELKIDTVDAFQGEEADIIIYSTVKT--CGNLS 80
Query: 307 FLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFE-FLQSCK 354
FL S L VA+SR K LI G + F+ S +K +F LQ C+
Sbjct: 81 FLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDEK--NIFSAILQVCR 127
>gb|AAH28188.1| (BC028188) Unknown (protein for IMAGE:4385301) [Homo sapiens]
Length = 378
Score = 58.5 bits (140), Expect = 1e-07
Identities = 71/313 (22%), Positives = 130/313 (40%), Gaps = 47/313 (15%)
Query: 38 LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIIL 97
LE L V + G ++ RK FD IVDEA++ + L + ++ R +L
Sbjct: 54 LEELYNSQLIVATTCMGINHPIFSRK---IFDFCIVDEASQISQPICLGPLFFSR-RFVL 109
Query: 98 VGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFIT 157
VGD +QLP + + + L + +S+FK+L++ K +
Sbjct: 110 VGDHQQLPPLVLNREARAL-------------GMSESLFKRLEQN---------KSAVVQ 147
Query: 158 LNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLD----------- 206
L +QY M+ + L + + Y+ E + + + FK L+
Sbjct: 148 LTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWL 207
Query: 207 ------NKPLAWIDVKESKEKRNAD-GSYYRESEITAIKECLDLFMKDE-PDFTFGVITF 258
N P+ +++ + + G +E I +F+K G+I
Sbjct: 208 MGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAP 267
Query: 259 FSEQKRLLEQAL-KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFG-FLKISSCLCV 316
+ +Q +++ L + +E+ TVD +QG++ +V +S VR+ + G LK L V
Sbjct: 268 YRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNNDGTVGELLKDWRRLNV 327
Query: 317 ALSRQKRALIVAG 329
A++R K LI+ G
Sbjct: 328 AITRAKHKLILLG 340
>ref|XP_166103.1| (XM_166103) DNA2 DNA replication helicase 2-like (yeast) [Homo
sapiens]
Length = 1060
Score = 57.8 bits (138), Expect = 2e-07
Identities = 71/313 (22%), Positives = 129/313 (40%), Gaps = 47/313 (15%)
Query: 38 LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIIL 97
LE L V + G ++ RK FD IVDEA++ + L + ++ R +L
Sbjct: 729 LEELYNSQLIVATTCMGINHPIFSRK---IFDFCIVDEASQISQPICLGPLFFSR-RFVL 784
Query: 98 VGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFIT 157
VGD +QLP + + + L + +S+FK+L++ K +
Sbjct: 785 VGDHQQLPPLVLNREARAL-------------GMSESLFKRLEQN---------KSAVVQ 822
Query: 158 LNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLD----------- 206
L +QY M+ + L + + Y+ E + + + FK L+
Sbjct: 823 LTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWL 882
Query: 207 ------NKPLAWIDVKESKEKRNAD-GSYYRESEITAIKECLDLFMKDE-PDFTFGVITF 258
N P+ +++ + + G +E I +F+K G+I
Sbjct: 883 MGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAP 942
Query: 259 FSEQKRLLEQAL-KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFG-FLKISSCLCV 316
+ +Q +++ L + +E+ TVD +QG++ +V +S VR+ G LK L V
Sbjct: 943 YRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNV 1002
Query: 317 ALSRQKRALIVAG 329
A++R K LI+ G
Sbjct: 1003 AITRAKHKLILLG 1015
>sp|P51530|DN2L_HUMAN DNA2-like homolog (DNA replication helicase-like homolog)
pir||T50697 hypothetical protein KIAA0083 [imported] - human (fragment)
dbj|BAA07647.1| (D42046) The ha3631 gene product is related to S.cerevisiae protein
encoded in chromosome VIII. [Homo sapiens]
Length = 1077
Score = 57.8 bits (138), Expect = 2e-07
Identities = 71/313 (22%), Positives = 129/313 (40%), Gaps = 47/313 (15%)
Query: 38 LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIIL 97
LE L V + G ++ RK FD IVDEA++ + L + ++ R +L
Sbjct: 746 LEELYNSQLIVATTCMGINHPIFSRK---IFDFCIVDEASQISQPICLGPLFFSR-RFVL 801
Query: 98 VGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFIT 157
VGD +QLP + + + L + +S+FK+L++ K +
Sbjct: 802 VGDHQQLPPLVLNREARAL-------------GMSESLFKRLEQN---------KSAVVQ 839
Query: 158 LNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLD----------- 206
L +QY M+ + L + + Y+ E + + + FK L+
Sbjct: 840 LTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWL 899
Query: 207 ------NKPLAWIDVKESKEKRNAD-GSYYRESEITAIKECLDLFMKDE-PDFTFGVITF 258
N P+ +++ + + G +E I +F+K G+I
Sbjct: 900 MGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAP 959
Query: 259 FSEQKRLLEQAL-KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFG-FLKISSCLCV 316
+ +Q +++ L + +E+ TVD +QG++ +V +S VR+ G LK L V
Sbjct: 960 YRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNV 1019
Query: 317 ALSRQKRALIVAG 329
A++R K LI+ G
Sbjct: 1020 AITRAKHKLILLG 1032
>gb|AAF57908.1| (AE003804) CG6967-PA [Drosophila melanogaster]
gb|AAM68495.1| (AE003804) CG6967-PB [Drosophila melanogaster]
Length = 765
Score = 57.0 bits (136), Expect = 3e-07
Identities = 75/323 (23%), Positives = 142/323 (43%), Gaps = 47/323 (14%)
Query: 50 SNTTGQHNQALERKETPYFDSVIVDEA-AKANPLELLMVMALAKE---RIILVGDDRQLP 105
++T G++N +F + +DEA A P L+ +M + + +IL GD +QL
Sbjct: 402 TDTLGRYN---------FFTHIFIDEAGASTEPEALIGIMGIKQTADCHVILSGDHKQLG 452
Query: 106 HYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMH 165
+ L ++ +E+ L+ +K E + + C Y H
Sbjct: 453 AVIKSNRAASLGL----SRSLMERLLQSDCYKS-DENGNYDRNRQMRLC-----RNYRSH 502
Query: 166 PLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKE---SKEKR 222
P + L ++++Y ++ ++P +L N VL N I + ++
Sbjct: 503 PQIVRLFNELYYNGELKA-QAPAMDVNLAA-----NWSVLTNPQFPIIFQATHGVTNREQ 556
Query: 223 NADGSYYR-ESEITA--IKECLDLFMKDEPDFTFGVITFFSEQKRLLEQAL--KGYANLE 277
N+ SY E+E+ +K ++ + + D G++ ++ Q +L+ + L KGY N+E
Sbjct: 557 NSTSSYNNLEAEVICWYVKRLINDRVVGQEDV--GIVAPYTAQGKLVTKLLQSKGYPNVE 614
Query: 278 IGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTP 337
+G+V+++QG+E ++ S V++ GF+ + V LSR K LI+ G+ P
Sbjct: 615 VGSVETYQGREKTIIIASLVKS--FTNMGFMCNPRRVNVLLSRAKALLILVGN------P 666
Query: 338 ESKDKVSGLFEFLQSCKKEGKIL 360
+ S + CKK G L
Sbjct: 667 VTLRHHSDFKFVINECKKHGTYL 689
>gb|AAF56255.1| (AE003746) CG6204 gene product [Drosophila melanogaster]
Length = 903
Score = 57.0 bits (136), Expect = 3e-07
Identities = 65/263 (24%), Positives = 116/263 (43%), Gaps = 40/263 (15%)
Query: 71 VIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKA 130
V+ +EAA+ ++ + E +ILVGD +QL + K
Sbjct: 643 VLFEEAAEIQEAHIVACLTPHTEHVILVGDHKQLQPFSGSR-----------------KV 685
Query: 131 LKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKG 190
+ S+F++L F LN+QY M + EL+ Y +E S
Sbjct: 686 PQISLFERLIVAGLP---------FSRLNLQYRMRSCISELLVPSIY---DELLCSESVK 733
Query: 191 KHLEEKPFKHNLR-VLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDEP 249
++ + + NL V N+P E + G+ Y + + E L +
Sbjct: 734 EYEDIRLMSKNLYFVQHNQP-------EHCMSDMSIGNLYEAGVLAKLTEFL-IQKAQYK 785
Query: 250 DFTFGVITFFSEQKRLLEQAL-KGY-ANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGF 307
+++ ++ Q ++ AL + Y + +++ +VDSFQG E ++V LS VR+ + GF
Sbjct: 786 HSDIVILSPYNGQIECIKNALPQNYRSTVQVASVDSFQGLEANIVLLSLVRSNISGRIGF 845
Query: 308 LKISSCLCVALSRQKRALIVAGD 330
L+ ++ +CVALSR + AL + G+
Sbjct: 846 LRQANRVCVALSRARWALYIVGN 868
>gb|AAM50264.1| (AY119610) LD34829p [Drosophila melanogaster]
Length = 825
Score = 57.0 bits (136), Expect = 3e-07
Identities = 75/323 (23%), Positives = 142/323 (43%), Gaps = 47/323 (14%)
Query: 50 SNTTGQHNQALERKETPYFDSVIVDEA-AKANPLELLMVMALAKE---RIILVGDDRQLP 105
++T G++N +F + +DEA A P L+ +M + + +IL GD +QL
Sbjct: 462 TDTLGRYN---------FFTHIFIDEAGASTEPEALIGIMGIKQTADCHVILSGDHKQLG 512
Query: 106 HYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMH 165
+ L ++ +E+ L+ +K E + + C Y H
Sbjct: 513 AVIKSNRAASLGL----SRSLMERLLQSDCYKS-DENGNYDRNRQMRLC-----RNYRSH 562
Query: 166 PLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKE---SKEKR 222
P + L ++++Y ++ ++P +L N VL N I + ++
Sbjct: 563 PQIVRLFNELYYNGELKA-QAPAMDVNLAA-----NWSVLTNPQFPIIFQATHGVTNREQ 616
Query: 223 NADGSYYR-ESEITA--IKECLDLFMKDEPDFTFGVITFFSEQKRLLEQAL--KGYANLE 277
N+ SY E+E+ +K ++ + + D G++ ++ Q +L+ + L KGY N+E
Sbjct: 617 NSTSSYNNLEAEVICWYVKRLINDRVVGQEDV--GIVAPYTAQGKLVTKLLQSKGYPNVE 674
Query: 278 IGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTP 337
+G+V+++QG+E ++ S V++ GF+ + V LSR K LI+ G+ P
Sbjct: 675 VGSVETYQGREKTIIIASLVKS--FTNMGFMCNPRRVNVLLSRAKALLILVGN------P 726
Query: 338 ESKDKVSGLFEFLQSCKKEGKIL 360
+ S + CKK G L
Sbjct: 727 VTLRHHSDFKFVINECKKHGTYL 749
>ref|NP_176754.1| (NM_105251) hypothetical protein [Arabidopsis thaliana]
Length = 1065
Score = 56.6 bits (135), Expect = 4e-07
Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 56/282 (19%)
Query: 71 VIVDEAAKANPLELLMVMALAKER-IILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEK 129
+++DEAA+ E + M L R +ILVGD+RQLP ++ +I +E
Sbjct: 567 LVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMVESQIA-------------LEA 613
Query: 130 ALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLK 189
S+F++L K LN+QY MH + P+ E L
Sbjct: 614 GFGRSLFERLALLGHKK---------YMLNIQYRMHCSISSF-------PNKE-----LY 652
Query: 190 GKHLEEKPF----KHNLRVLDNK---PLAWIDVKESKEKRNADGSYYRESEITA------ 236
GK + + P + + L + P ++I++ +E+ ++ +
Sbjct: 653 GKKILDAPTVRQRNYTKQYLPGEMYGPYSFINIAYGREEYGEGEGRSLKNNVEVVVVAAI 712
Query: 237 IKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALK--------GYANLEIGTVDSFQGKE 288
I L + K + GVI+ + Q +++ ++ G +L I TVD FQG E
Sbjct: 713 IANLLQVSEKTKTRINVGVISPYKAQVIAIQEKIQETSIGDAGGLFSLRIRTVDGFQGGE 772
Query: 289 FDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
D++ +S+VR+ GFL V L+R + L + G+
Sbjct: 773 EDIIIVSTVRSNGVGRVGFLGNRRRTNVLLTRARFCLWILGN 814
>gb|AAF23837.1|AC007234_9 (AC007234) F1E22.14 [Arabidopsis thaliana]
Length = 1076
Score = 56.6 bits (135), Expect = 4e-07
Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 56/282 (19%)
Query: 71 VIVDEAAKANPLELLMVMALAKER-IILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEK 129
+++DEAA+ E + M L R +ILVGD+RQLP ++ +I +E
Sbjct: 567 LVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMVESQIA-------------LEA 613
Query: 130 ALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLK 189
S+F++L K LN+QY MH + P+ E L
Sbjct: 614 GFGRSLFERLALLGHKK---------YMLNIQYRMHCSISSF-------PNKE-----LY 652
Query: 190 GKHLEEKPF----KHNLRVLDNK---PLAWIDVKESKEKRNADGSYYRESEITA------ 236
GK + + P + + L + P ++I++ +E+ ++ +
Sbjct: 653 GKKILDAPTVRQRNYTKQYLPGEMYGPYSFINIAYGREEYGEGEGRSLKNNVEVVVVAAI 712
Query: 237 IKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALK--------GYANLEIGTVDSFQGKE 288
I L + K + GVI+ + Q +++ ++ G +L I TVD FQG E
Sbjct: 713 IANLLQVSEKTKTRINVGVISPYKAQVIAIQEKIQETSIGDAGGLFSLRIRTVDGFQGGE 772
Query: 289 FDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
D++ +S+VR+ GFL V L+R + L + G+
Sbjct: 773 EDIIIVSTVRSNGVGRVGFLGNRRRTNVLLTRARFCLWILGN 814
>ref|NP_198532.1| (NM_123075) sen1-like protein [Arabidopsis thaliana]
Length = 871
Score = 56.6 bits (135), Expect = 4e-07
Identities = 70/277 (25%), Positives = 115/277 (41%), Gaps = 43/277 (15%)
Query: 69 DSVIVDEAAKANPLELLMVMALAKE-RIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
D ++VDE A+ E + + L +L+GD+ QLP + +E E
Sbjct: 561 DLLVVDETAQLKECESVAALQLPGLCHALLIGDEYQLPAMVHNE--------------EC 606
Query: 128 EKA-LKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFES 186
+KA S+F++L L G + LN+QY MHP + + FY ++
Sbjct: 607 DKAKFGRSLFERLV--------LIGHSKHL-LNVQYRMHPSISRFPNKEFYG--GRITDA 655
Query: 187 PLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMK 246
+ + EK F ++I+V KE+ S E+ I + + K
Sbjct: 656 ANVQESIYEKRFLQGNMF---GTFSFINVGRGKEEFGDGHSPKNMVEVAVISKIISNLFK 712
Query: 247 ----DEPDFTFGVITFFSEQKRLLEQALKGYAN---------LEIGTVDSFQGKEFDVVF 293
+ + GVI+ + Q R +++ + N L + +VD FQG E DV+
Sbjct: 713 VSSQRKQKMSVGVISPYKGQVRAIQERVGDKYNSLSVDQLFTLNVQSVDGFQGGEVDVII 772
Query: 294 LSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
+S+VR GFL VAL+R + L V G+
Sbjct: 773 ISTVRCNVNGNVGFLSNRQRANVALTRARHCLWVIGN 809
>dbj|BAB11373.1| (AB017068) contains similarity to DNA helicase~gene_id:MJG14.23
[Arabidopsis thaliana]
Length = 834
Score = 56.6 bits (135), Expect = 4e-07
Identities = 70/277 (25%), Positives = 115/277 (41%), Gaps = 43/277 (15%)
Query: 69 DSVIVDEAAKANPLELLMVMALAKE-RIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
D ++VDE A+ E + + L +L+GD+ QLP + +E E
Sbjct: 524 DLLVVDETAQLKECESVAALQLPGLCHALLIGDEYQLPAMVHNE--------------EC 569
Query: 128 EKA-LKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFES 186
+KA S+F++L L G + LN+QY MHP + + FY ++
Sbjct: 570 DKAKFGRSLFERLV--------LIGHSKHL-LNVQYRMHPSISRFPNKEFYG--GRITDA 618
Query: 187 PLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMK 246
+ + EK F ++I+V KE+ S E+ I + + K
Sbjct: 619 ANVQESIYEKRFLQGNMF---GTFSFINVGRGKEEFGDGHSPKNMVEVAVISKIISNLFK 675
Query: 247 ----DEPDFTFGVITFFSEQKRLLEQALKGYAN---------LEIGTVDSFQGKEFDVVF 293
+ + GVI+ + Q R +++ + N L + +VD FQG E DV+
Sbjct: 676 VSSQRKQKMSVGVISPYKGQVRAIQERVGDKYNSLSVDQLFTLNVQSVDGFQGGEVDVII 735
Query: 294 LSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
+S+VR GFL VAL+R + L V G+
Sbjct: 736 ISTVRCNVNGNVGFLSNRQRANVALTRARHCLWVIGN 772
>ref|NP_651229.1| (NM_142972) CG6204 gene product [Drosophila melanogaster]
gb|AAL13650.1| (AY058421) GH20028p [Drosophila melanogaster]
Length = 903
Score = 56.2 bits (134), Expect = 6e-07
Identities = 65/263 (24%), Positives = 116/263 (43%), Gaps = 40/263 (15%)
Query: 71 VIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKA 130
V+ +EAA+ ++ + E +ILVGD +QL + K
Sbjct: 643 VLFEEAAEIQEAHIVACLTPHTEHVILVGDHKQLQPFSGSR-----------------KV 685
Query: 131 LKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKG 190
+ S+F++L F LN+QY M + EL+ Y +E S
Sbjct: 686 PQISLFERLIVAGLP---------FSRLNLQYRMRSCISELLVPSIY---DELLCSESVK 733
Query: 191 KHLEEKPFKHNLR-VLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDEP 249
++ + + NL V N+P E + G+ Y + + E L +
Sbjct: 734 EYEDIRLMSKNLYFVQHNQP-------EHCMSDMSIGNLYEAGVLAKLTEFL-IQKAQYK 785
Query: 250 DFTFGVITFFSEQKRLLEQAL-KGY-ANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGF 307
+++ ++ Q ++ AL + Y + +++ +VDSFQG E ++V LS VR+ + GF
Sbjct: 786 HSDIVILSPYNGQIECIKNALPQNYRSTVQVASVDSFQGLEANIVLLSLVRSYISGRIGF 845
Query: 308 LKISSCLCVALSRQKRALIVAGD 330
L+ ++ +CVALSR + AL + G+
Sbjct: 846 LRQANRVCVALSRARWALYIVGN 868
>gb|AAF58307.1| (AE003816) CG6701-PB [Drosophila melanogaster]
gb|AAM68567.1| (AE003816) CG6701-PA [Drosophila melanogaster]
Length = 1194
Score = 56.2 bits (134), Expect = 6e-07
Identities = 78/307 (25%), Positives = 132/307 (42%), Gaps = 50/307 (16%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKE---RIILVGDDRQLPHYLDDEIGKKLEDESQDAQ 124
+ V VDEAA + E+LM + +IL GD +QL L +SQ A
Sbjct: 620 YTHVFVDEAAASTEAEVLMGITCTLSPTLNLILSGDHKQLGPVL----------QSQRAN 669
Query: 125 DEIEKALKDSMFKKLKERAQKLKELDGK---ECFITLNMQYGMHPLLGELVSDVFYKPHN 181
E L ++F++L +R E DG L + HP + L ++++Y+ H
Sbjct: 670 ---EWGLGLTLFERLLQRKCYQVEEDGSYNASVQTRLIRNFRSHPEIVSLYNNMYYEGHL 726
Query: 182 ESFESPLKGKHLEEKPFKHNLRVLDNK--PLAWIDVKESKEKRNADGSYYRESEITAIKE 239
+ E+P+ E HN L N P+ + V + + S EI + +
Sbjct: 727 RT-EAPM-----EIVCRFHNWFYLPNATFPIMFHSVFGTTMNTKSSVSLCNNKEIDVVMD 780
Query: 240 CLDLFMKDEPDF----------TFGVITFFSEQKRLLEQAL--KGYANLEIGTVDSFQGK 287
++KD F G+I+ + Q + +++ L + ++ ++ G+V+ FQGK
Sbjct: 781 ----YVKDLMYFGLNGEKLLQTDIGIISPYKNQYQRIQEQLNMRNWSQIDCGSVELFQGK 836
Query: 288 EFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLF 347
E V+ +S VR+ T GFL L V LSR LI+ G+ P + + S
Sbjct: 837 EKHVIIVSFVRS-FTPKLGFLNNERRLNVLLSRPISLLILIGN------PRTLSQNSDFQ 889
Query: 348 EFLQSCK 354
++ C+
Sbjct: 890 HIIEMCR 896
>gb|AAL79550.1|AF474372_1 (AF474372) helicase [Xenopus laevis]
Length = 1053
Score = 55.8 bits (133), Expect = 7e-07
Identities = 76/319 (23%), Positives = 139/319 (42%), Gaps = 59/319 (18%)
Query: 38 LESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIIL 97
LE L V + G ++ R+ FD IVDEA++ + L + A +R +L
Sbjct: 730 LEELYNSQPVVATTCMGVNHPIFTRRR---FDFCIVDEASQISQPICLGPLFFA-DRFVL 785
Query: 98 VGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFIT 157
VGD +QLP + +S +A+ E + +S+FK+L+ +E +
Sbjct: 786 VGDHQQLPPLV----------KSAEAR---ELGMSESLFKRLERN---------QEAVVQ 823
Query: 158 LNMQYGMHPLLGELVSDVFYK-----------------PHNESFESPLKGKHLEEKPFKH 200
L +QY M+ + L + + Y+ PH ++ L+ + +E +
Sbjct: 824 LTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRESQESMWIK 883
Query: 201 NLRVLDNKPLAWIDVK-----ESKEKRNADGSYYRESEITAIKECLDLFMKD--EPDFTF 253
++ N P+ +++ + E++EK G E + L++K P
Sbjct: 884 DVLEPSN-PVCFLNTEKIPALETEEK----GGISNWIEAKLVFHLTKLYLKAGCRPS-DI 937
Query: 254 GVITFFSEQKRLLEQALKGYAN--LEIGTVDSFQGKEFDVVFLSSVRTRHTEGFG-FLKI 310
G+I + +Q +++ + +E+ TVD +QG++ V+ +S VR+ G LK
Sbjct: 938 GIIAPYRQQLKMISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLKD 997
Query: 311 SSCLCVALSRQKRALIVAG 329
L VAL+R K LI+ G
Sbjct: 998 WRRLNVALTRAKHKLIMLG 1016
>gb|EAA00145.1| (AAAB01008986) agCP9964 [Anopheles gambiae str. PEST]
Length = 387
Score = 55.5 bits (132), Expect = 1e-06
Identities = 36/114 (31%), Positives = 62/114 (53%), Gaps = 9/114 (7%)
Query: 227 SYYRESEITAIKECLDLFMKDEPDFTF------GVITFFSEQKRLLEQALK--GYANLEI 278
SY+ E + + + + MK+E + G++T +S+Q ++ L G N+E+
Sbjct: 225 SYWNVQEAQLVYQYVQILMKEEINGQIVRQEDIGIVTPYSKQVEFIKNGLSTLGLDNIEV 284
Query: 279 GTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDRE 332
G+V+ +QG+E V+ +S+VR+ T GFL L VAL+R + IV G+ E
Sbjct: 285 GSVNQYQGREKPVIIISAVRSNRTT-VGFLADPRRLNVALTRAQALTIVIGNPE 337
>emb|CAB63041.1| (AL022328) dJ402G11.8 (novel protein similar to mouse MOV10 (GB110)
and yeast and plant predicted proteins) [Homo sapiens]
Length = 417
Score = 54.7 bits (130), Expect = 2e-06
Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 52/293 (17%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKE---RIILVGDDRQLPHYLDDEIGKKLEDESQDA 123
+F V VDEA +A+ E L+ + L + +I+L GD QL + +
Sbjct: 85 HFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLA---------- 134
Query: 124 QDEIEKALKDSMFKKLKERAQKLKELDG-------KECFIT-LNMQYGMHPLLGELVSDV 175
+ L S ++L R ++ + +T L Y H L L S +
Sbjct: 135 ---MAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRL 191
Query: 176 FYKPHNESFESP------LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYY 229
FY E P L + L +K F PL + V+ S+ + S++
Sbjct: 192 FYHRELEVCADPTVVTSLLGWEKLPKKGF----------PLIFHGVRGSEAREGKSPSWF 241
Query: 230 RESE-ITAIKECLDLFMKDEPDFT---FGVITFFSEQKRLLEQALKGY--ANLEIGTVDS 283
+E + ++ C L + GVIT + +Q + L+ ++++G+V+
Sbjct: 242 NPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSVEE 301
Query: 284 FQGKEFDVVFLSSVRTRHTE------GFGFLKISSCLCVALSRQKRALIVAGD 330
FQG+E+ V+ +S+VR+ GFL S VA++R K LIV G+
Sbjct: 302 FQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGN 354
>ref|NP_061868.1| (NM_018995) MOV10-like 1; novel protein similar to mouse Mov10; Mov10
(mouse)-like 1 [Homo sapiens]
gb|AAK31983.1|AF285604_1 (AF285604) MOV10-like 1 [Homo sapiens]
Length = 1211
Score = 54.7 bits (130), Expect = 2e-06
Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 52/293 (17%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKE---RIILVGDDRQLPHYLDDEIGKKLEDESQDA 123
+F V VDEA +A+ E L+ + L + +I+L GD QL + +
Sbjct: 879 HFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLA---------- 928
Query: 124 QDEIEKALKDSMFKKLKERAQKLKELDG-------KECFIT-LNMQYGMHPLLGELVSDV 175
+ L S ++L R ++ + +T L Y H L L S +
Sbjct: 929 ---MAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRL 985
Query: 176 FYKPHNESFESP------LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYY 229
FY E P L + L +K F PL + V+ S+ + S++
Sbjct: 986 FYHRELEVCADPTVVTSLLGWEKLPKKGF----------PLIFHGVRGSEAREGKSPSWF 1035
Query: 230 RESE-ITAIKECLDLFMKDEPDFT---FGVITFFSEQKRLLEQALKGY--ANLEIGTVDS 283
+E + ++ C L + GVIT + +Q + L+ ++++G+V+
Sbjct: 1036 NPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSVEE 1095
Query: 284 FQGKEFDVVFLSSVRTRHTE------GFGFLKISSCLCVALSRQKRALIVAGD 330
FQG+E+ V+ +S+VR+ GFL S VA++R K LIV G+
Sbjct: 1096 FQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGN 1148
>ref|XP_131179.1| (XM_131179) similar to prematurely terminated mRNA decay
factor-like [Mus musculus]
Length = 237
Score = 54.7 bits (130), Expect = 2e-06
Identities = 48/182 (26%), Positives = 77/182 (41%), Gaps = 22/182 (12%)
Query: 156 ITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDV 215
+ L QY HP + + +D+FY+ G + + VL+ P
Sbjct: 6 VLLRTQYRCHPAISAIANDLFYE-----------GSLVNGISERERSPVLEWLPTLCFYN 54
Query: 216 KESKEKRNADGSYYRESEIT-AIKECLDLFMKDEPDFTFGVITFFSEQK----RLLEQAL 270
E+ + S+ +E T +K L GVIT + Q LL
Sbjct: 55 VTGAEQVERENSFVNVAEATFTLKLIQSLMASGVESCMIGVITLYKSQMYKICNLLSAVD 114
Query: 271 KGYANL---EIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIV 327
G+ ++ ++ TVD+FQG E ++ LS VRTR GF+ + VAL+R +R L++
Sbjct: 115 VGHPDVKAVQVSTVDAFQGAEKEITILSCVRTRQV---GFIDSEKRMNVALTRGRRHLLI 171
Query: 328 AG 329
G
Sbjct: 172 VG 173
>pir||T42668 hypothetical protein DKFZp434B0717.1 - human (fragment)
emb|CAB61391.1| (AL133068) hypothetical protein [Homo sapiens]
Length = 678
Score = 54.7 bits (130), Expect = 2e-06
Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 52/293 (17%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKE---RIILVGDDRQLPHYLDDEIGKKLEDESQDA 123
+F V VDEA +A+ E L+ + L + +I+L GD QL + +
Sbjct: 346 HFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLA---------- 395
Query: 124 QDEIEKALKDSMFKKLKERAQKLKELDG-------KECFIT-LNMQYGMHPLLGELVSDV 175
+ L S ++L R ++ + +T L Y H L L S +
Sbjct: 396 ---MAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRL 452
Query: 176 FYKPHNESFESP------LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYY 229
FY E P L + L +K F PL + V+ S+ + S++
Sbjct: 453 FYHRELEVCADPTVVTSLLGWEKLPKKGF----------PLIFHGVRGSEAREGKSPSWF 502
Query: 230 RESE-ITAIKECLDLFMKDEPDFT---FGVITFFSEQKRLLEQALKGY--ANLEIGTVDS 283
+E + ++ C L + GVIT + +Q + L+ ++++G+V+
Sbjct: 503 NPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSVEE 562
Query: 284 FQGKEFDVVFLSSVRTRHTE------GFGFLKISSCLCVALSRQKRALIVAGD 330
FQG+E+ V+ +S+VR+ GFL S VA++R K LIV G+
Sbjct: 563 FQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGN 615
>ref|NP_604339.1| (NC_003454) DNA helicase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gb|AAL95638.1| (AE010649) DNA helicase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 849
Score = 54.3 bits (129), Expect = 2e-06
Identities = 76/342 (22%), Positives = 141/342 (41%), Gaps = 60/342 (17%)
Query: 37 DLESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERII 96
D S+L +Y + S T N +D +I+DEA++ + + ++ A+ +I
Sbjct: 411 DPYSVLAEYPVILSTTFSSRNSL---NSDVVYDYLIMDEASQVDIATGALALSSARNAVI 467
Query: 97 LVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFI 156
VGD +QLP+ + ++I K A+ + ++ K Q + ++ +
Sbjct: 468 -VGDTKQLPNIVTNDIKNK-------AKGIFDTFNMSEGYQYTKSFLQSILDVIPNVTQV 519
Query: 157 TLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVK 216
L Y HP + + FY+ + KG + L+ + +
Sbjct: 520 LLREHYRCHPKIINFCNQKFYRGELIIMTTD-KG---------------EKDVLSVVKTR 563
Query: 217 ESKEKRNADGSYYRESEITAIK-ECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYAN 275
+RN +Y + +I IK E + ++ + + G+IT + Q +E K N
Sbjct: 564 VGNHERN----HYSQRQIDVIKNEIIPKYILNSKE--CGIITPYKNQ---VEALNKEITN 614
Query: 276 LEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALI--VAGDRE- 332
++ TV FQGKE + + +S+V ++ F + VA+SR K+ LI V G+ +
Sbjct: 615 IDASTVHKFQGKEKENIIISTVDDEISD---FADDPYLINVAVSRAKKKLILVVTGNEQT 671
Query: 333 ---------------KFDTPESKDKVSGLFEFLQSCKKEGKI 359
FD ES K+ +F++L E +I
Sbjct: 672 KEYNITDLMDYIQYNNFDVVES--KIYSIFDYLYKQYTEKRI 711
>gb|AAH30185.1| (BC030185) Unknown (protein for MGC:29401) [Mus musculus]
Length = 237
Score = 53.5 bits (127), Expect = 4e-06
Identities = 50/182 (27%), Positives = 79/182 (42%), Gaps = 22/182 (12%)
Query: 156 ITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDV 215
+ L QY HP + + +D+FY+ S + G E+ VL+ P
Sbjct: 6 VLLRTQYRCHPAISAIANDLFYEG------SLVNGISERERG-----PVLEWLPTLCFYN 54
Query: 216 KESKEKRNADGSYYRESEIT-AIKECLDLFMKDEPDFTFGVITFFSEQK----RLLEQAL 270
E+ + S+ +E T +K L GVIT + Q LL
Sbjct: 55 VTGAEQVERENSFVNVAEATFTLKLIQSLMASGIESCMIGVITLYKSQMYKICNLLSAVD 114
Query: 271 KGYANL---EIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIV 327
G+ ++ ++ TVD+FQG E ++ LS VRTR GF+ + VAL+R +R L++
Sbjct: 115 VGHPDVKAVQVSTVDAFQGAEKEITILSCVRTRQV---GFIDSEKRMNVALTRGRRHLLI 171
Query: 328 AG 329
G
Sbjct: 172 VG 173
>ref|NP_603846.1| (NC_003454) DNA helicase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gb|AAL95145.1| (AE010602) DNA helicase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 1425
Score = 53.5 bits (127), Expect = 4e-06
Identities = 82/317 (25%), Positives = 138/317 (42%), Gaps = 66/317 (20%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD VIVDEA++++ + L+++ +AK +II+VGDD+Q+ ++G ++
Sbjct: 1000 FDIVIVDEASQSD-ISSLILLYMAK-KIIVVGDDKQVS---PSDVGVNID---------- 1044
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPH-NESFES 186
K +MF++ K + G + + YG+ L +VS F E F S
Sbjct: 1045 ----KINMFRR--------KYIKGN---VANDDLYGVRASLYSIVSTTFQPISLREHFRS 1089
Query: 187 PLKGKHLEEK--------PFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIK 238
+ K P + + + + V ++++N E+ +T I+
Sbjct: 1090 VPEIIGYSNKTSYDNQILPLRDSNSSILKPAIVEYKVDGKRDEKNKVNKVEAETIVTLIE 1149
Query: 239 ECLDLFMKDEPDFTFGVITFFSEQKRLLEQAL--KGYANLEI-------GTVDSFQGKEF 289
CLD MK+ + +FGVI+ +++ L Q L K +EI G SFQG E
Sbjct: 1150 ACLD--MKEYKNSSFGVISLLGDEQAELIQNLIVKRIPAIEIENHKILCGNPASFQGDER 1207
Query: 290 DVVFLSSVRTRH-----------TEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPE 338
DV+F+S V + EG + + VA+SR K L + +K E
Sbjct: 1208 DVMFISLVDSSEENKNLRLVGEGVEGATRKRYN----VAISRAKDQLWLVHSIDKNSLKE 1263
Query: 339 SKDKVSGLFEFLQSCKK 355
D LFE++ S K+
Sbjct: 1264 G-DLRKELFEYINSVKE 1279
>ref|NP_011103.1| (NC_001137) DNA Helicase; identified as an ExtraCellular Mutant;
homology exists between ECM32 and two other identified
DNA helicases, DNA2 and NAM7; Ecm32p [Saccharomyces
cerevisiae]
sp|P32644|YE06_YEAST HYPOTHETICAL 127.0 KD PROTEIN IN RAD24-BMH1 INTERGENIC REGION
pir||S30862 DNA dependent ATPase/DNA helicase B - yeast (Saccharomyces
cerevisiae)
gb|AAB64703.1| (U18922) Yer176wp [Saccharomyces cerevisiae]
Length = 1121
Score = 52.8 bits (125), Expect = 6e-06
Identities = 82/338 (24%), Positives = 125/338 (36%), Gaps = 91/338 (26%)
Query: 63 KETPYFDSVIVDEAAKANPLELLMVMALAKER-IILVGDDRQLPHYLDDEIGKKLEDESQ 121
KE P VI+DEA +++ L+ ++L R + VGD++QL + + Q
Sbjct: 812 KECPV---VIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQLSSF---------SNIPQ 859
Query: 122 DAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHN 181
E+ L + +K + L+ QY MHP + E P
Sbjct: 860 LETSLFERVLSNGTYKNP----------------LMLDTQYRMHPKISEF-------PIK 896
Query: 182 ESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADG-------SYYRESEI 234
+ + LK +E+ ++ PL + E R +Y + E
Sbjct: 897 KIYNGELKDGVTDEQKAWPGVQ----HPLFFYQCDLGPESRVRSTQRDIVGFTYENKHEC 952
Query: 235 TAIKECLDLFMKDE--PDFTFGVITFFSEQKRLLEQAL---------------------- 270
I + + + M D+ P GVIT +S Q+ LL L
Sbjct: 953 VEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIEL 1012
Query: 271 ------KGYAN------------LEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISS 312
+G A L + TVDSFQG E + S VR GFL+
Sbjct: 1013 FNAAGSQGTAGSLQNNVINIINGLHVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKR 1072
Query: 313 CLCVALSRQKRALIVAGDRE--KFDTPESKDKVSGLFE 348
L VAL+R K LIV G++ + P KD ++ L E
Sbjct: 1073 RLNVALTRAKHGLIVVGNKNVLRKGDPLWKDYITYLEE 1110
>ref|NP_070784.1| (NC_000917) DNA helicase, putative [Archaeoglobus fulgidus]
pir||G69494 DNA helicase homolog - Archaeoglobus fulgidus
gb|AAB89295.1| (AE000968) DNA helicase, putative [Archaeoglobus fulgidus]
Length = 453
Score = 52.4 bits (124), Expect = 8e-06
Identities = 78/294 (26%), Positives = 125/294 (41%), Gaps = 44/294 (14%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD+VI+DEA+ L+ + A E+ ++VGD QLP E+G
Sbjct: 194 FDTVIIDEASNTCISTALLALEKA-EKAVVVGDPYQLPPVY--EVGG------------- 237
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
KA K S + L + GK + L Y + + E + Y E
Sbjct: 238 HKAAKFSAYNFLIN-------IYGKNLW--LRRHYRSNAKIAEFAARHVYG----FLEID 284
Query: 188 LKGKHLEEKPFKHNLRVLDN--KPLAWIDVKESKEKRNADGSYYRESEITA-IKECLDLF 244
K + ++ +P K + + + KPL +ID + + E+E+ A I E L
Sbjct: 285 EKCRRIKIEPCKTTIPEVGDPEKPLVFIDCNGVERREGRSKVNEEEAEVVAMIAEELAEC 344
Query: 245 MKDEPDFTFGVITFFSEQKRLLEQALKGYANL-EIGTVDSFQGKEFDVVFLSSVRTRHTE 303
+ +E GVIT + +Q L+ L + + E+ TV S+QG+E DVV S T +
Sbjct: 345 VGEE---NVGVITPYVKQAELIRGILSEFGVMVEVSTVHSYQGREKDVVIYSITATGNPY 401
Query: 304 GFGFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKKEG 357
F VAL+R ++ I G+ + E K+ + L F+ + KEG
Sbjct: 402 ---FASEKRLFNVALTRARKKFIAVGNSKAL---EGKNLL--LTRFMVAAIKEG 447
>dbj|BAA90895.1| (AK000033) unnamed protein product [Homo sapiens]
Length = 338
Score = 52.0 bits (123), Expect = 1e-05
Identities = 70/293 (23%), Positives = 120/293 (40%), Gaps = 52/293 (17%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKE---RIILVGDDRQLPHYLDDEIGKKLEDESQDA 123
+F V VDEA +A+ E L+ + L + +I+L GD QL + +
Sbjct: 6 HFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLA---------- 55
Query: 124 QDEIEKALKDSMFKKLKERAQKLKELDG-------KECFIT-LNMQYGMHPLLGELVSDV 175
+ L S ++L R ++ + +T L Y H L L S +
Sbjct: 56 ---MAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRL 112
Query: 176 FYKPHNESFESP------LKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYY 229
FY E P L + L +K F PL + V+ S+ + S++
Sbjct: 113 FYHRELEVCADPTVVTSLLGWEKLPKKGF----------PLIFHGVRGSEAREGKSPSWF 162
Query: 230 RESE-ITAIKECLDLFMKDEPDFT---FGVITFFSEQKRLLEQALKGY--ANLEIGTVDS 283
+E + ++ C L + GVIT + +Q + L+ ++++G+V+
Sbjct: 163 NPAEAVQVLRYCCLLAHSISSQVSASDVGVITPYRKQVEKIRILLRNVDLMDIKVGSVEE 222
Query: 284 FQGKEFDVVFLSSVRTRHTE------GFGFLKISSCLCVALSRQKRALIVAGD 330
QG+E+ V+ +S+VR+ GFL S VA++R K LIV G+
Sbjct: 223 LQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGN 275
>ref|NP_440543.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
pir||S75309 hypothetical protein sll1582 - Synechocystis sp. (strain PCC 6803)
dbj|BAA17223.1| (D90904) ORF_ID:sll1582~unknown protein [Synechocystis sp. PCC 6803]
Length = 1118
Score = 52.0 bits (123), Expect = 1e-05
Identities = 67/305 (21%), Positives = 131/305 (41%), Gaps = 32/305 (10%)
Query: 47 FVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPH 106
FV + +T + L R+ FD +I+DEA++ +L ++ L + +L+GD +QLP
Sbjct: 785 FVTTVSTFKDKYLLLREFVGEFDQLIIDEASQLTEADLAGIVVLF-NKFVLIGDQKQLPA 843
Query: 107 YL---DDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYG 163
+ ++E ++E + A + + L+ S+F++L A K C+ L Y
Sbjct: 844 VITQNEEECRVEVEPFRRYAINISD--LRISLFERLINNA---KNKGWNHCYGQLTEHYR 898
Query: 164 MHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDV--KESKEK 221
MH + L++ + +P E + K + E L L +I+ + S ++
Sbjct: 899 MHRDIASLIAHHYDRPLVEQTQEQRKIESSYENNDNDLLSKLSKSRTIFIETPSETSIQR 958
Query: 222 RNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALK--------GY 273
+N + + + + E K P G+I F Q + Q L+
Sbjct: 959 KNTNEAIIAATIVKTYWE-----NKLLPMAEIGIIAPFRAQVAEINQQLEKIFAGADFSR 1013
Query: 274 ANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISS--------CLCVALSRQKRAL 325
++ + TV+ FQG E +++ S+ + + I+ L V++SR K L
Sbjct: 1014 DSIVVDTVERFQGDERELIIFSTTISWSKQVKNIQSIADGDRQGTDRKLLVSISRAKSKL 1073
Query: 326 IVAGD 330
++ G+
Sbjct: 1074 VILGN 1078
>gb|AAD27693.1|AF125214_3 (AF125214) urease-enhancing factor helB [Helicobacter pylori]
Length = 185
Score = 51.2 bits (121), Expect = 2e-05
Identities = 41/142 (28%), Positives = 72/142 (49%), Gaps = 24/142 (16%)
Query: 168 LGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLA-WIDVKESKEKRNADG 226
+G LVS +FYK + L+ K+ + D K + WI+V+ E +
Sbjct: 5 IGSLVSQLFYK------------EKLKNGVIKNTSQFYDPKNIIRWINVEG--EHKLEKT 50
Query: 227 SYYRESEITAIKECLD----LFMKDEPDFTFGVITFFSEQKRLLEQALKGYA-----NLE 277
S Y ++++ I E L+ + + + T G+IT ++ QKR L ++ Y L+
Sbjct: 51 SSYNKNQVQKIIELLEQINRILNQRKIRKTIGIITPYNAQKRCLRSEVEKYGFKNFDELK 110
Query: 278 IGTVDSFQGKEFDVVFLSSVRT 299
I TVD+FQG++ D++ S+V+T
Sbjct: 111 IDTVDAFQGEKADIIIYSTVKT 132
>ref|NP_299688.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||D82560 conserved hypothetical protein XF2409 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF85208.1|AE004050_1 (AE004050) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 347
Score = 50.8 bits (120), Expect = 2e-05
Identities = 34/101 (33%), Positives = 51/101 (49%), Gaps = 9/101 (8%)
Query: 254 GVITFFSEQKRLLEQALKGYA--------NLEIGTVDSFQGKEFDVVFLSSVRTRHTEGF 305
G++T F Q R + QA + + +GTV + QG E VV S+V ++H +G
Sbjct: 54 GILTPFETQARAISQACRDVGIEVGHEKDGITVGTVHALQGAERPVVIFSAVYSKHADGG 113
Query: 306 GFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGL 346
+ +S L VA+SR K +V GD + F T K + GL
Sbjct: 114 FIDQRASMLNVAVSRAKNTFLVFGDMDVF-TAAPKSRPRGL 153
>ref|NP_491374.1| (NM_058973) DNA-binding protein [Caenorhabditis elegans]
pir||T28788 hypothetical protein C41D11.7 - Caenorhabditis elegans
gb|AAC48142.1| (AF003740) Hypothetical protein C41D11.7 [Caenorhabditis elegans]
Length = 633
Score = 49.7 bits (117), Expect = 5e-05
Identities = 73/317 (23%), Positives = 128/317 (40%), Gaps = 59/317 (18%)
Query: 72 IVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKAL 131
I+DEAA+ + + K RI++ GD +QLP + + K L
Sbjct: 244 IIDEAAQVMEAQTWPAVYKMK-RIVMAGDPKQLPALVFTDEAKAF-------------GL 289
Query: 132 KDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLK-- 189
++S+ ++ E+ +I L QY + + + FY HN+ ++ +K
Sbjct: 290 QNSVMDRILEKKNNFS-------WIMLENQYRSNAKIATWSNTCFY--HNQ-LKTDVKCH 339
Query: 190 --GKHLEEKPFKHNLRVLDNKPLAWID--VKESKEKR--NADGSYYRESEITAIKECLDL 243
H P R L + PL ID ++ EKR + + + + I K+
Sbjct: 340 EYSLHTILNPQPKKFRNLFD-PLVLIDTSLERDVEKRLETYEHAVFDTNSINKTKQGFSY 398
Query: 244 FMKDEPDFTFG----------------VITFFSEQKRLLEQALK------GYANL---EI 278
E G +IT + Q L+ + ++ GY + I
Sbjct: 399 ANLAEAKIAIGHYQRLLKYGVQPSDIAIITPYKGQTSLVTKLMEEFGAETGYTDFVQTTI 458
Query: 279 GTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPE 338
GTVDS QGKE++VV + VR+ + GF+ L V ++R KR + G+
Sbjct: 459 GTVDSVQGKEYEVVIFTMVRSNPRKTMGFVSELRRLNVVITRAKRHFMFIGNGYLL-AES 517
Query: 339 SKDKVSGLFEFLQSCKK 355
KD++ L++ ++ K+
Sbjct: 518 KKDEIRKLYDCFKNAKR 534
>gb|AAK00458.1| (AF200692) unknown [Shigella flexneri 2a]
Length = 338
Score = 49.3 bits (116), Expect = 7e-05
Identities = 34/110 (30%), Positives = 54/110 (48%), Gaps = 8/110 (7%)
Query: 254 GVITFFSEQKRLLEQAL--------KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGF 305
G++T FS Q ++Q L +L +GTV S QG E +V S V ++H +G
Sbjct: 51 GIVTPFSAQVSTIKQVLGKQDISTGTNEKSLTVGTVHSLQGAERAIVIFSPVYSKHEDGG 110
Query: 306 GFLKISSCLCVALSRQKRALIVAGDREKFDTPESKDKVSGLFEFLQSCKK 355
+S L VA+SR K + +V GD + F+ + L ++L +K
Sbjct: 111 FIDSDNSMLNVAVSRAKDSFLVFGDMDLFEVQPASSPRGLLAKYLFESEK 160
>dbj|BAB84997.1| (AK074171) FLJ00244 protein [Homo sapiens]
Length = 1124
Score = 48.5 bits (114), Expect = 1e-04
Identities = 66/282 (23%), Positives = 120/282 (42%), Gaps = 50/282 (17%)
Query: 71 VIVDEAAKANPLELL--MVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIE 128
++VDEA A E L +V E+++L+GD +QL + +E + L
Sbjct: 832 ILVDEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNL------------ 879
Query: 129 KALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPL 188
L S+F++ E A L + QY MH + S FYK ++++
Sbjct: 880 -GLDRSLFERYHEDAHML------------DTQYRMHEGICAFPSVAFYKSKLKTWQGLR 926
Query: 189 KGKHLEEKPFKHNLRVL-----DNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDL 243
+ + K + V+ ++ + E E N+ + +E+ I + L L
Sbjct: 927 RPPSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNE--NSKANLEEVAEVVRITKQLTL 984
Query: 244 FMKDEPDFTFGVITFFSEQKRLLEQALK--GYANLEIGTVDSFQGKEFDVVFLSSVRT-- 299
EP V+T ++ Q + +AL+ G A + + ++ QG E+ V +S+VRT
Sbjct: 985 GRTVEPQ-DIAVLTPYNAQASEISKALRREGIAGVAVSSITKSQGSEWRYVLVSTVRTCA 1043
Query: 300 ------RHTEGF-----GFLKISSCLCVALSRQKRALIVAGD 330
R T+ + GF+ + + VA++R + L + GD
Sbjct: 1044 KSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGD 1085
>dbj|BAB21860.2| (AB051556) KIAA1769 protein [Homo sapiens]
Length = 2114
Score = 48.5 bits (114), Expect = 1e-04
Identities = 66/282 (23%), Positives = 120/282 (42%), Gaps = 50/282 (17%)
Query: 71 VIVDEAAKANPLELL--MVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIE 128
++VDEA A E L +V E+++L+GD +QL + +E + L
Sbjct: 1822 ILVDEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNL------------ 1869
Query: 129 KALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPL 188
L S+F++ E A L + QY MH + S FYK ++++
Sbjct: 1870 -GLDRSLFERYHEDAHML------------DTQYRMHEGICAFPSVAFYKSKLKTWQGLR 1916
Query: 189 KGKHLEEKPFKHNLRVL-----DNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDL 243
+ + K + V+ ++ + E E N+ + +E+ I + L L
Sbjct: 1917 RPPSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNE--NSKANLEEVAEVVRITKQLTL 1974
Query: 244 FMKDEPDFTFGVITFFSEQKRLLEQALK--GYANLEIGTVDSFQGKEFDVVFLSSVRT-- 299
EP V+T ++ Q + +AL+ G A + + ++ QG E+ V +S+VRT
Sbjct: 1975 GRTVEPQ-DIAVLTPYNAQASEISKALRREGIAGVAVSSITKSQGSEWRYVLVSTVRTCA 2033
Query: 300 ------RHTEGF-----GFLKISSCLCVALSRQKRALIVAGD 330
R T+ + GF+ + + VA++R + L + GD
Sbjct: 2034 KSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGD 2075
>gb|AAM74197.1|AF517673_1 (AF517673) peroxisomal proliferator-activated receptor A interacting
complex-285 peptide [Homo sapiens]
Length = 2080
Score = 48.5 bits (114), Expect = 1e-04
Identities = 66/282 (23%), Positives = 120/282 (42%), Gaps = 50/282 (17%)
Query: 71 VIVDEAAKANPLELL--MVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIE 128
++VDEA A E L +V E+++L+GD +QL + +E + L
Sbjct: 1788 ILVDEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNL------------ 1835
Query: 129 KALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPL 188
L S+F++ E A L + QY MH + S FYK ++++
Sbjct: 1836 -GLDRSLFERYHEDAHML------------DTQYRMHEGICAFPSVAFYKSKLKTWQGLR 1882
Query: 189 KGKHLEEKPFKHNLRVL-----DNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDL 243
+ + K + V+ ++ + E E N+ + +E+ I + L L
Sbjct: 1883 RPPSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNE--NSKANLEEVAEVVRITKQLTL 1940
Query: 244 FMKDEPDFTFGVITFFSEQKRLLEQALK--GYANLEIGTVDSFQGKEFDVVFLSSVRT-- 299
EP V+T ++ Q + +AL+ G A + + ++ QG E+ V +S+VRT
Sbjct: 1941 GRTVEPQ-DIAVLTPYNAQASEISKALRREGIAGVAVSSITKSQGSEWRYVLVSTVRTCA 1999
Query: 300 ------RHTEGF-----GFLKISSCLCVALSRQKRALIVAGD 330
R T+ + GF+ + + VA++R + L + GD
Sbjct: 2000 KSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGD 2041
>ref|NP_280319.1| (NC_002607) DNA helicase; Hel [Halobacterium sp. NRC-1]
gb|AAG19799.1| (AE005064) DNA helicase; Hel [Halobacterium sp. NRC-1]
Length = 821
Score = 48.5 bits (114), Expect = 1e-04
Identities = 73/310 (23%), Positives = 121/310 (38%), Gaps = 41/310 (13%)
Query: 35 PWDLESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKER 94
P + + LR V + T ++ L E FD V+VDEA++ + L + R
Sbjct: 545 PGERAAALRSAPVVAATTATCGSRILRELE---FDVVLVDEASQLTEPDTLAAINRGA-R 600
Query: 95 IILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKEC 154
+LVGD QLP + L S+F++L E E
Sbjct: 601 FVLVGDHEQLPPVVRSG-----------------GRLSKSLFERLHETYP--------EA 635
Query: 155 FITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWID 214
+ L+ QY M + S FY S + G+ L + V + + + D
Sbjct: 636 SVMLDQQYRMSQRIQAFSSREFYDGQLRPASSEVAGQRLTDVGVDPGGAV--HGGVTFYD 693
Query: 215 VKESKEKRNADGSYYRESEITAIKECLDLFMKDEPD-FTFGVITFFSEQKRLLEQALKGY 273
V D ++ +E + + + ++ D GVI F Q + E +
Sbjct: 694 VP------GTDDAHVDPAEADRVADVVTAYVDAGLDPGEIGVIAPFRAQ--VAEIGRRTP 745
Query: 274 ANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGDREK 333
A + + TVD FQG +V+ +S V EG + + VALSR K++L++ GD
Sbjct: 746 AGVAVDTVDRFQGSSKEVIVVSFVARGTLEG-PIFEDHRRVNVALSRAKKSLVLVGDERA 804
Query: 334 FDTPESKDKV 343
+ D++
Sbjct: 805 LRSEPLYDRM 814
>dbj|BAB70969.1| (AK055611) unnamed protein product [Homo sapiens]
Length = 413
Score = 48.5 bits (114), Expect = 1e-04
Identities = 66/282 (23%), Positives = 120/282 (42%), Gaps = 50/282 (17%)
Query: 71 VIVDEAAKANPLELL--MVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIE 128
++VDEA A E L +V E+++L+GD +QL + +E + L
Sbjct: 121 ILVDEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNL------------ 168
Query: 129 KALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPL 188
L S+F++ E A L + QY MH + S FYK ++++
Sbjct: 169 -GLDRSLFERYHEDAHML------------DTQYRMHEGICAFPSVAFYKSKLKTWQGLR 215
Query: 189 KGKHLEEKPFKHNLRVL-----DNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDL 243
+ + K + V+ ++ + E E N+ + +E+ I + L L
Sbjct: 216 RPPSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNE--NSKANLEEVAEVVRITKQLTL 273
Query: 244 FMKDEPDFTFGVITFFSEQKRLLEQALK--GYANLEIGTVDSFQGKEFDVVFLSSVRT-- 299
EP V+T ++ Q + +AL+ G A + + ++ QG E+ V +S+VRT
Sbjct: 274 GRTVEPQ-DIAVLTPYNAQASEISKALRREGIAGVAVSSITKSQGSEWRYVLVSTVRTCA 332
Query: 300 ------RHTEGF-----GFLKISSCLCVALSRQKRALIVAGD 330
R T+ + GF+ + + VA++R + L + GD
Sbjct: 333 KSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGD 374
>ref|XP_028918.1| (XM_028918) similar to Hypothetical protein KIAA0054 [Homo sapiens]
Length = 2080
Score = 48.5 bits (114), Expect = 1e-04
Identities = 66/282 (23%), Positives = 120/282 (42%), Gaps = 50/282 (17%)
Query: 71 VIVDEAAKANPLELL--MVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIE 128
++VDEA A E L +V E+++L+GD +QL + +E + L
Sbjct: 1788 ILVDEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNL------------ 1835
Query: 129 KALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPL 188
L S+F++ E A L + QY MH + S FYK ++++
Sbjct: 1836 -GLDRSLFERYHEDAHML------------DTQYRMHEGICAFPSVAFYKSKLKTWQGLR 1882
Query: 189 KGKHLEEKPFKHNLRVL-----DNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDL 243
+ + K + V+ ++ + E E N+ + +E+ I + L L
Sbjct: 1883 RPPSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNE--NSKANLEEVAEVVRITKQLTL 1940
Query: 244 FMKDEPDFTFGVITFFSEQKRLLEQALK--GYANLEIGTVDSFQGKEFDVVFLSSVRT-- 299
EP V+T ++ Q + +AL+ G A + + ++ QG E+ V +S+VRT
Sbjct: 1941 GRTVEPQ-DIAVLTPYNAQASEISKALRREGIAGVAVSSITKSQGSEWRYVLVSTVRTCA 1999
Query: 300 ------RHTEGF-----GFLKISSCLCVALSRQKRALIVAGD 330
R T+ + GF+ + + VA++R + L + GD
Sbjct: 2000 KSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGD 2041
>ref|NP_342893.1| (NC_002754) Hypothetical protein [Sulfolobus solfataricus]
gb|AAK41683.1| (AE006761) Hypothetical protein [Sulfolobus solfataricus]
Length = 139
Score = 47.4 bits (111), Expect = 3e-04
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 224 ADGSYYRESE--ITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYAN-LEIGT 280
A G Y+ +E + AIK + + + GVI+ + Q R L+Q L Y +E+ T
Sbjct: 25 ASGKAYKVAEEIVKAIKFLISKLIGQD----VGVISPYRTQVRKLDQELANYKPYVEVNT 80
Query: 281 VDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAGD 330
VD+FQG+E DV+ S T G F+ L VA +R + LIV G+
Sbjct: 81 VDAFQGREKDVIIFS---VTATNGLRFVTNRRRLNVAFTRPRYKLIVLGN 127
>ref|NP_215767.1| (NC_000962) hypothetical protein Rv1251c [Mycobacterium tuberculosis
H37Rv]
pir||B70954 hypothetical protein Rv1251c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA15907.1| (AL021006) hypothetical protein Rv1251c [Mycobacterium tuberculosis
H37Rv]
Length = 1139
Score = 47.0 bits (110), Expect = 3e-04
Identities = 71/290 (24%), Positives = 120/290 (40%), Gaps = 33/290 (11%)
Query: 69 DSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIE 128
D +++DEA + L + +A A ++L+GD +QLP Q +Q
Sbjct: 869 DLLVIDEAGQFC-LANTIAVAPAATNLLLLGDPQQLP---------------QVSQGTHP 912
Query: 129 KALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPL 188
+ + S L + L + G L+ Y MHP + VS + Y+ S
Sbjct: 913 EPVDTSALSWLVDGQHTLPDERG----YFLDRSYRMHPAVCAAVSALSYEGRLCSHTERT 968
Query: 189 KGKHLEEKPFKHNLRVLDNKPLAWIDVKESK----EKRNADGSYYRESEITAIKECLDLF 244
+ L+ P + R + +K + +E++ E R GS + + T D+
Sbjct: 969 AVRRLDGYPPGVHTRGVHHKGNSIESPEEAEAILAELRQLLGSPWTDEHGTRPLAASDVL 1028
Query: 245 MKDEPDFTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTE- 303
+ + ++ ++RL L G + +GTVD FQG + VVF+S + +
Sbjct: 1029 VLAPYNAQVALV-----RRRLASAGLGGADGVRVGTVDKFQGGQAPVVFISMTASSADDV 1083
Query: 304 --GFGFLKISSCLCVALSR-QKRALIVAGDREKFDTPESKDKVSGLFEFL 350
G FL + L VA+SR Q A+IV + P + D + L FL
Sbjct: 1084 PRGISFLLNRNRLNVAVSRAQYAAVIVRSELLTQYLPATPDGLVDLGAFL 1133
>ref|NP_335734.1| (NC_002755) hypothetical protein [Mycobacterium tuberculosis CDC1551]
gb|AAK45548.1| (AE007004) hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length = 1147
Score = 47.0 bits (110), Expect = 3e-04
Identities = 71/290 (24%), Positives = 120/290 (40%), Gaps = 33/290 (11%)
Query: 69 DSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIE 128
D +++DEA + L + +A A ++L+GD +QLP Q +Q
Sbjct: 877 DLLVIDEAGQFC-LANTIAVAPAATNLLLLGDPQQLP---------------QVSQGTHP 920
Query: 129 KALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPL 188
+ + S L + L + G L+ Y MHP + VS + Y+ S
Sbjct: 921 EPVDTSALSWLVDGQHTLPDERG----YFLDRSYRMHPAVCAAVSALSYEGRLCSHTERT 976
Query: 189 KGKHLEEKPFKHNLRVLDNKPLAWIDVKESK----EKRNADGSYYRESEITAIKECLDLF 244
+ L+ P + R + +K + +E++ E R GS + + T D+
Sbjct: 977 AVRRLDGYPPGVHTRGVHHKGNSIESPEEAEAILAELRQLLGSPWTDEHGTRPLAASDVL 1036
Query: 245 MKDEPDFTFGVITFFSEQKRLLEQALKGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTE- 303
+ + ++ ++RL L G + +GTVD FQG + VVF+S + +
Sbjct: 1037 VLAPYNAQVALV-----RRRLASAGLGGADGVRVGTVDKFQGGQAPVVFISMTASSADDV 1091
Query: 304 --GFGFLKISSCLCVALSR-QKRALIVAGDREKFDTPESKDKVSGLFEFL 350
G FL + L VA+SR Q A+IV + P + D + L FL
Sbjct: 1092 PRGISFLLNRNRLNVAVSRAQYAAVIVRSELLTQYLPATPDGLVDLGAFL 1141
>ref|NP_014149.1| (NC_001146) coiled-coil protein, contains a purine-binding domain,
two heptad repeats and a hydrophobic tail; Rad50p
[Saccharomyces cerevisiae]
sp|P12753|RA50_YEAST DNA repair protein RAD50 (153 kDa protein)
pir||BWBYDL RAD50 protein - yeast (Saccharomyces cerevisiae)
emb|CAA32919.1| (X14814) 153 kD protein (AA 1 - 1312) [Saccharomyces cerevisiae]
emb|CAA65494.1| (X96722) ORF N0872 [Saccharomyces cerevisiae]
emb|CAA96157.1| (Z71526) ORF YNL250w [Saccharomyces cerevisiae]
Length = 1312
Score = 46.2 bits (108), Expect = 6e-04
Identities = 63/282 (22%), Positives = 110/282 (38%), Gaps = 28/282 (9%)
Query: 6 DLLEILSSQSPNDKRIRVLLEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQALERKET 65
D L+ ++ + ND RIR + +R DLE D+ +F N Q N A+ K+
Sbjct: 546 DELQKITEKLQNDSRIRQVFPLTQEFQRA--DLEM---DFQKLFINM--QKNIAINNKKM 598
Query: 66 PYFDSVIVDEAAKANPLEL-LMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQ 124
D + N +E L +KE++I + + DE LE+ +
Sbjct: 599 HELDRRYTNALYNLNTIEKDLQDNQKSKEKVIQLLSENLPEDCTIDEYNDVLEETELSYK 658
Query: 125 DEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESF 184
+E + +A ++ E D C + ++ +L+ ++ K + +F
Sbjct: 659 TALENLKMHQTTLEFNRKALEIAERDS--CCYLCSRKFENESFKSKLLQELKTKT-DANF 715
Query: 185 ESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKE-----------SKEKRNADGSYYRESE 233
E LK EK + H+LR+L+ + + E +KE+ S E E
Sbjct: 716 EKTLKDTVQNEKEYLHSLRLLEKHIITLNSINEKIDNSQKCLEKAKEETKTSKSKLDELE 775
Query: 234 ITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYAN 275
+ + K +KDE + I E+ LE+ LK N
Sbjct: 776 VDSTK------LKDEKELAESEIRPLIEKFTYLEKELKDLEN 811
>gb|AAH04499.1|AAH04499 (BC004499) Unknown (protein for IMAGE:3832816) [Homo sapiens]
Length = 604
Score = 45.8 bits (107), Expect = 8e-04
Identities = 74/329 (22%), Positives = 133/329 (39%), Gaps = 62/329 (18%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKE---------RIILVGDDRQLPHYLDDEIGKKLE 117
+F + +DEA E L+ +A E +++L GD RQL L + +K
Sbjct: 239 HFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQK-- 296
Query: 118 DESQDAQDEIEKALKDSMFKKLKERAQKLKE-LDGKEC-FIT-LNMQYGMHPLLGELVSD 174
L S+ ++L K+ DG + FIT L Y HP + ++ +
Sbjct: 297 -----------HGLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQ 345
Query: 175 VFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEI 234
++Y+ ++ + E+ + P+ + V E+ S++ E
Sbjct: 346 LYYEGELQACADVVD----RERFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEA 401
Query: 235 TAIKECLDLFMKDEPDF--------TFGVITFFSEQKRL-------LEQALKGY---ANL 276
+ L L + + GVI+ + +Q L++ L+G +L
Sbjct: 402 ATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDL 461
Query: 277 EIGTVDSFQGKEFDVVFLSSVRTRHT-------EGFGFLKISSCLCVALSRQKRALIVAG 329
++G+V+ FQG+E V+ +S+VR+ + GFLK VA++R K LI+ G
Sbjct: 462 KVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVG 521
Query: 330 DREKF-DTPESKDKVSGLFEFLQSCKKEG 357
+ P+ K FL+ CK+ G
Sbjct: 522 NPLLLGHDPDWK-------VFLEFCKENG 543
>gb|EAA04125.1| (AAAB01008807) agCP3739 [Anopheles gambiae str. PEST]
Length = 1041
Score = 45.8 bits (107), Expect = 8e-04
Identities = 65/298 (21%), Positives = 124/298 (40%), Gaps = 31/298 (10%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKERI---ILVGDDRQLPHYLDDEIGKKLEDESQDA 123
+F VIVDEA + E+L+ + + LVGD +QL + E+++ +
Sbjct: 735 HFTHVIVDEAGQGLEPEVLIPICQVSRTVGSVTLVGDPKQLGPMVHFN-----EEQTWTS 789
Query: 124 Q-DEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNE 182
+E+ L ++ ++R L + Y P + L +D+FY E
Sbjct: 790 HLSLLERLLSLRLYSIDRQRFTGDTAGYDPRLVTLLRINYRSIPNVLSLYNDMFYDSALE 849
Query: 183 SFESPLKGKHLE---------EKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESE 233
+ + + ++ + P + K + + + ++ S++ +E
Sbjct: 850 PYVKEVADEDIQLLGAIRDILKLPKPSDSSEDSRKGFFFCGIDGTNKQSPDSPSWFNSAE 909
Query: 234 ITAIKECLDLFMKDEP--DFTFGVITFFSEQKRLLEQALKGYANLE---IGTVDSFQGKE 288
+ + ++ + E G+IT + Q R + + A LE IG+V+ FQG+E
Sbjct: 910 ACMVHKIVERLYRGERCGPADIGIITPYVMQVRSIRRTFDA-AMLEPPKIGSVEEFQGQE 968
Query: 289 FDVVFLSSVRTR-------HTEGFGFLKISSCLCVALSRQKRALIVAGDREKFDTPES 339
V+ +S+VR+ GF+ + VALSR K ALIV G+ + T ++
Sbjct: 969 RKVIIVSTVRSSSAYLAHDSNTKIGFISAPKRINVALSRAKVALIVIGNPKLLATDKT 1026
>ref|NP_066014.1| (NM_020963) Mov10, Moloney leukemia virus 10, homolog; Mov10
(Moloney leukemia virus 10, mouse) homolog; gb110 [Homo
sapiens]
gb|AAH02548.1|AAH02548 (BC002548) Similar to Moloney leukemia virus 10 [Homo sapiens]
gb|AAH09312.1|AAH09312 (BC009312) Mov10 (Moloney leukemia virus 10, mouse) homolog [Homo
sapiens]
Length = 1003
Score = 45.8 bits (107), Expect = 8e-04
Identities = 74/329 (22%), Positives = 133/329 (39%), Gaps = 62/329 (18%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKE---------RIILVGDDRQLPHYLDDEIGKKLE 117
+F + +DEA E L+ +A E +++L GD RQL L + +K
Sbjct: 638 HFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQK-- 695
Query: 118 DESQDAQDEIEKALKDSMFKKLKERAQKLKE-LDGKEC-FIT-LNMQYGMHPLLGELVSD 174
L S+ ++L K+ DG + FIT L Y HP + ++ +
Sbjct: 696 -----------HGLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQ 744
Query: 175 VFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEI 234
++Y+ ++ + E+ + P+ + V E+ S++ E
Sbjct: 745 LYYEGELQACADVVD----RERFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEA 800
Query: 235 TAIKECLDLFMKDEPDF--------TFGVITFFSEQKRL-------LEQALKGY---ANL 276
+ L L + + GVI+ + +Q L++ L+G +L
Sbjct: 801 ATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDL 860
Query: 277 EIGTVDSFQGKEFDVVFLSSVRTRHT-------EGFGFLKISSCLCVALSRQKRALIVAG 329
++G+V+ FQG+E V+ +S+VR+ + GFLK VA++R K LI+ G
Sbjct: 861 KVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVG 920
Query: 330 DREKF-DTPESKDKVSGLFEFLQSCKKEG 357
+ P+ K FL+ CK+ G
Sbjct: 921 NPLLLGHDPDWK-------VFLEFCKENG 942
>dbj|BAB13457.1| (AB046851) KIAA1631 protein [Homo sapiens]
Length = 1032
Score = 45.8 bits (107), Expect = 8e-04
Identities = 74/329 (22%), Positives = 133/329 (39%), Gaps = 62/329 (18%)
Query: 67 YFDSVIVDEAAKANPLELLMVMALAKE---------RIILVGDDRQLPHYLDDEIGKKLE 117
+F + +DEA E L+ +A E +++L GD RQL L + +K
Sbjct: 667 HFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQK-- 724
Query: 118 DESQDAQDEIEKALKDSMFKKLKERAQKLKE-LDGKEC-FIT-LNMQYGMHPLLGELVSD 174
L S+ ++L K+ DG + FIT L Y HP + ++ +
Sbjct: 725 -----------HGLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQ 773
Query: 175 VFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEI 234
++Y+ ++ + E+ + P+ + V E+ S++ E
Sbjct: 774 LYYEGELQACADVVD----RERFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEA 829
Query: 235 TAIKECLDLFMKDEPDF--------TFGVITFFSEQKRL-------LEQALKGY---ANL 276
+ L L + + GVI+ + +Q L++ L+G +L
Sbjct: 830 ATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDL 889
Query: 277 EIGTVDSFQGKEFDVVFLSSVRTRHT-------EGFGFLKISSCLCVALSRQKRALIVAG 329
++G+V+ FQG+E V+ +S+VR+ + GFLK VA++R K LI+ G
Sbjct: 890 KVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVG 949
Query: 330 DREKF-DTPESKDKVSGLFEFLQSCKKEG 357
+ P+ K FL+ CK+ G
Sbjct: 950 NPLLLGHDPDWK-------VFLEFCKENG 971
>gb|AAA02813.1| (M26044) hsc82 protein [Saccharomyces cerevisiae]
Length = 705
Score = 45.4 bits (106), Expect = 0.001
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 79 ANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKK 138
A P++LL+ + KE + + ++ + DE KK + E D ++E +K KK
Sbjct: 202 AYPIQLLVTKEVEKE--VPIPEEEKKDEEKKDEDDKKPKLEEVDEEEEEKKPKT----KK 255
Query: 139 LKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPF 198
+KE Q+L+EL+ + T N + + + FYK + +E PL KH +
Sbjct: 256 VKEEVQELEELNKTKPLWTRNPSD-----ITQEEYNAFYKSISNDWEDPLYVKHFSVEGQ 310
Query: 199 KHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEIT 235
+L A D+ ESK+K+N Y R IT
Sbjct: 311 LEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFIT 347
>ref|NP_013911.1| (NC_001145) constitutively expressed heat shock protein; Hsc82p
[Saccharomyces cerevisiae]
sp|P15108|HS83_YEAST HEAT SHOCK COGNATE PROTEIN HSC82
pir||S55133 heat shock protein HSC82 - yeast (Saccharomyces cerevisiae)
emb|CAA89919.1| (Z49808) Hsc82p [Saccharomyces cerevisiae]
Length = 705
Score = 45.4 bits (106), Expect = 0.001
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 79 ANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKK 138
A P++LL+ + KE + + ++ + DE KK + E D ++E +K KK
Sbjct: 202 AYPIQLLVTKEVEKE--VPIPEEEKKDEEKKDEDDKKPKLEEVDEEEEEKKPKT----KK 255
Query: 139 LKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPF 198
+KE Q+L+EL+ + T N + + + FYK + +E PL KH +
Sbjct: 256 VKEEVQELEELNKTKPLWTRNPSD-----ITQEEYNAFYKSISNDWEDPLYVKHFSVEGQ 310
Query: 199 KHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEIT 235
+L A D+ ESK+K+N Y R IT
Sbjct: 311 LEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFIT 347
>gb|AAD27694.1|AF125214_4 (AF125214) HelA [Helicobacter pylori]
Length = 88
Score = 45.1 bits (105), Expect = 0.001
Identities = 26/73 (35%), Positives = 44/73 (59%), Gaps = 2/73 (2%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD I+DE +A E+L + AL +++IL+GD QLP +D + ++LE + D I
Sbjct: 3 FDVTIIDETGRATAPEIL-IPALRTKKLILIGDHNQLPPSIDRYLLEQLESDDIQNLDAI 61
Query: 128 EK-ALKDSMFKKL 139
++ L++S F+ L
Sbjct: 62 DRQLLEESFFENL 74
>ref|NP_015084.1| (NC_001148) 82 kDa heat shock protein; homolog of mammalian Hsp90;
Hsp82p [Saccharomyces cerevisiae]
sp|P02829|HS82_YEAST Heat shock protein HSP82
pir||HHBY90 heat shock protein 90 - yeast (Saccharomyces cerevisiae)
gb|AAA02743.1| (K01387) hsp82 protein [Saccharomyces cerevisiae]
emb|CAA91604.1| (Z67751) HSP90/HSP82? [Saccharomyces cerevisiae]
emb|CAA97961.1| (Z73596) ORF YPL240c [Saccharomyces cerevisiae]
Length = 709
Score = 44.7 bits (104), Expect = 0.002
Identities = 43/158 (27%), Positives = 76/158 (47%), Gaps = 9/158 (5%)
Query: 79 ANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI-EKALKDSMFK 137
A P++L++ + KE + + ++++ D+E KK ED+ + +E+ E+ K K
Sbjct: 202 AYPIQLVVTKEVEKE-VPIPEEEKKDEEKKDEE--KKDEDDKKPKLEEVDEEEEKKPKTK 258
Query: 138 KLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKP 197
K+KE Q+++EL+ + T N + + + FYK + +E PL KH +
Sbjct: 259 KVKEEVQEIEELNKTKPLWTRNPSD-----ITQEEYNAFYKSISNDWEDPLYVKHFSVEG 313
Query: 198 FKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEIT 235
+L A D+ ESK+K+N Y R IT
Sbjct: 314 QLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFIT 351
>gb|EAA03204.1| (AAAB01008026) ebiP2028 [Anopheles gambiae str. PEST]
Length = 1100
Score = 44.7 bits (104), Expect = 0.002
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 268 QALKGYANLEIGTVDSFQGKEFDVVFLSSVRT--------------RHTEGFGFLKISSC 313
+ L N+E+ T+D FQGK+ ++ S ++ R + G+ L S
Sbjct: 978 EQLNHTCNIEVNTIDQFQGKDKKIILFSCTKSSNLSDDIWINKGKERSSHGYEILSDKSR 1037
Query: 314 LCVALSRQKRALIVAGDREKFDT 336
L VA++R K LI+ GDR D+
Sbjct: 1038 LTVAITRAKEKLIIIGDRLTLDS 1060
>ref|NP_418728.1| (NC_000913) putative frameshift suppressor [Escherichia coli K12]
sp|P39369|YJHR_ECOLI Hypothetical protein yjhR
pir||S56533 hypothetical 38K protein (fecI-fimB intergenic region) -
Escherichia coli
gb|AAA97204.1| (U14003) ORF_o338 [Escherichia coli]
gb|AAC77264.1| (AE000501) putative frameshift suppressor [Escherichia coli K12]
Length = 338
Score = 44.7 bits (104), Expect = 0.002
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 254 GVITFFSEQKRLLEQALKGY--------ANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGF 305
GV+T FS Q ++ +L+ L +GTV S QG E +V S V ++H +G
Sbjct: 51 GVVTPFSAQVNAIKMSLRKLEINGKDEQGLLTVGTVHSLQGAERAIVLFSPVYSKHEDGR 110
Query: 306 GFLKISSCLCVALSRQKRALIVAGDRE 332
S+ L VA+SR K + +V GD +
Sbjct: 111 FLDSNSTILNVAVSRAKDSFLVFGDMD 137
>gb|AAF49702.1| (AE003533) CG9425 gene product [Drosophila melanogaster]
Length = 2061
Score = 44.3 bits (103), Expect = 0.002
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 209 PLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFMKDEP-------DFTFGVITFFSE 261
PL + + + ++Y +E+ + E + K P D + G++T +S+
Sbjct: 1020 PLTFFTTRGEDVQDKNSTAFYNNAEVYEVVERVSELRKRWPSAWGKLNDTSIGIMTPYSD 1079
Query: 262 QKRLLEQALKG--YANLEIGTVDSFQGKEFDVVFLSSVRTRHT----------------- 302
Q + L+ + + V + QGK+F VFLS+VRTR T
Sbjct: 1080 QVFRIRSELRKRRMGGISVERVLNVQGKQFRAVFLSTVRTRRTCMPQGSAPGSASTTSIG 1139
Query: 303 ---EGFGFLKISSCLCVALSRQKRALIVAGD 330
+GFL S L A++R + + V GD
Sbjct: 1140 DADADYGFLSNSKLLNTAITRAQSLVAVVGD 1170
>ref|NP_657079.1| (NC_003995) hypothetical protein predicted by GeneMark [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 759
Score = 44.3 bits (103), Expect = 0.002
Identities = 63/277 (22%), Positives = 111/277 (39%), Gaps = 34/277 (12%)
Query: 68 FDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEI 127
FD V+VDE + A ++ + +L K RI++ GD QLP + + +
Sbjct: 335 FDLVVVDEVSMAFVPQIALAASLGK-RIVVCGDFLQLPPI------------AMANHELV 381
Query: 128 EKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESP 187
K L + MF + + + + L Q MH + + + YK S
Sbjct: 382 RKWLGEDMFYH-AGIVESVNKSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSV 440
Query: 188 LKGKHLEE-KPFKHNLRVL-DNKPLAWIDVKESKEKRNADGSYYRESEITAIKECLDLFM 245
+ K L + +PF + VL D + +K++ A GS + + + + +
Sbjct: 441 SERKELAQLQPFANEASVLFDTSQMGAFSLKDA-----ASGSRFNIMSGLVAMQMMLIGL 495
Query: 246 KDEPDFTFGVITFFSEQKRLLEQALK------GYANLEI--GTVDSFQGKEFDVVFLSSV 297
D + G++T + Q R L ++ Y N+ + TV FQG E D++ +V
Sbjct: 496 LDGVQ-SIGIVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTV 554
Query: 298 RTRHTEGFGFL----KISSCLCVALSRQKRALIVAGD 330
+ E G L K + VA++R + I D
Sbjct: 555 DSYPQERPGVLFFDHKNHRLVNVAVTRARGKFIQLSD 591
>gb|AAA58611.1| (M64979) glial factor-1 [Homo sapiens]
Length = 376
Score = 43.9 bits (102), Expect = 0.003
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 249 PDFTFGVITFFSEQKRLLEQAL-KGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGF 307
P V++ ++ Q LL Q+L + LEI +VD FQG+E + V LS VR+ GF
Sbjct: 41 PARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGF 100
Query: 308 LKISSCLCVALSRQKRALIVAGD 330
L + VA++R +R + V D
Sbjct: 101 LAEDRRINVAVTRARRHVAVICD 123
>gb|AAL96717.1| (AC116330) DNA replication helicase dna2. [Dictyostelium discoideum]
Length = 1838
Score = 43.1 bits (100), Expect = 0.005
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 270 LKGYANLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFG-FLKISSCLCVALSRQKRALIVA 328
LK NL+I T+D FQGK+ D + +S VR+ + G +K + VA +R K+ LI
Sbjct: 1745 LKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFV 1804
Query: 329 GDREKFDT-PESKDKVSGLFEFLQS 352
G + P D FEFL S
Sbjct: 1805 GSKSSLSKFPFFLD----FFEFLDS 1825
>ref|NP_193292.1| (NM_117648) SEN1 like protein [Arabidopsis thaliana]
Length = 525
Score = 42.7 bits (99), Expect = 0.006
Identities = 63/271 (23%), Positives = 105/271 (38%), Gaps = 68/271 (25%)
Query: 59 ALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLED 118
AL K FD VI+DEAA+A L+ +A +++ LVGD +QLP + +
Sbjct: 187 ALLAKSNRGFDVVIIDEAAQAVEPATLIPLATRCKQVFLVGDPKQLPATVISTV------ 240
Query: 119 ESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHP------------ 166
AQD SMF++L++ +K L QY MHP
Sbjct: 241 ----AQD---SGYGTSMFERLQKAGYPVK---------MLKTQYRMHPELIPISQTKPKI 284
Query: 167 ----LLGELVSDVFYK-------------PHNESFESPLK-GKHLEEKPFK--HNLRVLD 206
+L +++ F P + +E L+ G +E + + H R
Sbjct: 285 VVSLILTPMIASYFTLQTIFLTENQIRSFPSKQFYEGALEDGSDIEAQTTRDWHKYRCFG 344
Query: 207 NKPLAWIDVKESKEKRN--ADGSYYRESEITAI----KECLDLFMKDEPDFTFGVITFFS 260
P + D+ E KE ++ A GS E+ + + ++ + + +I+ ++
Sbjct: 345 --PFCFFDIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISPYN 402
Query: 261 EQKRLLEQALKGYANLE------IGTVDSFQ 285
Q + + K E I TVD FQ
Sbjct: 403 YQVKTFKDRFKEMFGTEAEKVVDINTVDGFQ 433
>pir||E71420 hypothetical protein - Arabidopsis thaliana
emb|CAB10335.1| (Z97339) SEN1 like protein [Arabidopsis thaliana]
emb|CAB78599.1| (AL161542) SEN1 like protein [Arabidopsis thaliana]
Length = 555
Score = 42.7 bits (99), Expect = 0.006
Identities = 63/271 (23%), Positives = 105/271 (38%), Gaps = 68/271 (25%)
Query: 59 ALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLED 118
AL K FD VI+DEAA+A L+ +A +++ LVGD +QLP + +
Sbjct: 217 ALLAKSNRGFDVVIIDEAAQAVEPATLIPLATRCKQVFLVGDPKQLPATVISTV------ 270
Query: 119 ESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHP------------ 166
AQD SMF++L++ +K L QY MHP
Sbjct: 271 ----AQD---SGYGTSMFERLQKAGYPVK---------MLKTQYRMHPELIPISQTKPKI 314
Query: 167 ----LLGELVSDVFYK-------------PHNESFESPLK-GKHLEEKPFK--HNLRVLD 206
+L +++ F P + +E L+ G +E + + H R
Sbjct: 315 VVSLILTPMIASYFTLQTIFLTENQIRSFPSKQFYEGALEDGSDIEAQTTRDWHKYRCFG 374
Query: 207 NKPLAWIDVKESKEKRN--ADGSYYRESEITAI----KECLDLFMKDEPDFTFGVITFFS 260
P + D+ E KE ++ A GS E+ + + ++ + + +I+ ++
Sbjct: 375 --PFCFFDIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISPYN 432
Query: 261 EQKRLLEQALKGYANLE------IGTVDSFQ 285
Q + + K E I TVD FQ
Sbjct: 433 YQVKTFKDRFKEMFGTEAEKVVDINTVDGFQ 463
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,967,548
Number of Sequences: 1026957
Number of extensions: 9284724
Number of successful extensions: 42632
Number of sequences better than 1.0e-02: 156
Number of HSP's better than 0.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 42333
Number of HSP's gapped (non-prelim): 195
length of query: 360
length of database: 324,149,939
effective HSP length: 122
effective length of query: 238
effective length of database: 198,861,185
effective search space: 47328962030
effective search space used: 47328962030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 98 (42.4 bits)