BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645077|ref|NP_207247.1| hypothetical protein
[Helicobacter pylori 26695]
         (472 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207247.1|  (NC_000915) hypothetical protein [Helicoba...   954  0.0

>ref|NP_207247.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64576 hypothetical protein HP0449 - Helicobacter pylori (strain 26695)
 gb|AAD07518.1| (AE000560) H. pylori predicted coding region HP0449 [Helicobacter
           pylori 26695]
          Length = 472

 Score =  954 bits (2467), Expect = 0.0
 Identities = 472/472 (100%), Positives = 472/472 (100%)

Query: 1   MEFFADSSFKAESLYYPKENNKSLNVNEIIIRKTIETSIKYHKQDTLRHAKVVSWHVLGE 60
           MEFFADSSFKAESLYYPKENNKSLNVNEIIIRKTIETSIKYHKQDTLRHAKVVSWHVLGE
Sbjct: 1   MEFFADSSFKAESLYYPKENNKSLNVNEIIIRKTIETSIKYHKQDTLRHAKVVSWHVLGE 60

Query: 61  VYYLHAKAFDDSKEIRVECKNHPIEKMAEKLEETNPEWFEKWREKQYTQTGESKPSKRIK 120
           VYYLHAKAFDDSKEIRVECKNHPIEKMAEKLEETNPEWFEKWREKQYTQTGESKPSKRIK
Sbjct: 61  VYYLHAKAFDDSKEIRVECKNHPIEKMAEKLEETNPEWFEKWREKQYTQTGESKPSKRIK 120

Query: 121 VFKNFTAFDDRLYTIECNLKNLDTHQKKFEICGALYDIYEQIFDETPSLKGRDLETYKAQ 180
           VFKNFTAFDDRLYTIECNLKNLDTHQKKFEICGALYDIYEQIFDETPSLKGRDLETYKAQ
Sbjct: 121 VFKNFTAFDDRLYTIECNLKNLDTHQKKFEICGALYDIYEQIFDETPSLKGRDLETYKAQ 180

Query: 181 DLSKKFMHLGFEQISKDLNDSRLNALLCYEEKVMQALAKKYPSFLQDLHDIKKYRNKDKH 240
           DLSKKFMHLGFEQISKDLNDSRLNALLCYEEKVMQALAKKYPSFLQDLHDIKKYRNKDKH
Sbjct: 181 DLSKKFMHLGFEQISKDLNDSRLNALLCYEEKVMQALAKKYPSFLQDLHDIKKYRNKDKH 240

Query: 241 GEKPQDGSSLTRVELERYRDGIYFLVENLLKNPLIKERENAQEEKHYKKNAEIDDRSQLS 300
           GEKPQDGSSLTRVELERYRDGIYFLVENLLKNPLIKERENAQEEKHYKKNAEIDDRSQLS
Sbjct: 241 GEKPQDGSSLTRVELERYRDGIYFLVENLLKNPLIKERENAQEEKHYKKNAEIDDRSQLS 300

Query: 301 NLNAPKPLFECFVGVNLAKAKYYSKKEEREKEKMILNFCKIFEIILFEAIQKQPKPDFKN 360
           NLNAPKPLFECFVGVNLAKAKYYSKKEEREKEKMILNFCKIFEIILFEAIQKQPKPDFKN
Sbjct: 301 NLNAPKPLFECFVGVNLAKAKYYSKKEEREKEKMILNFCKIFEIILFEAIQKQPKPDFKN 360

Query: 361 KDELLGDYPNLKNLDSLREVREDFLKRAFKNDEASLGAYVLVLLSCKYFESVFEKVQEWL 420
           KDELLGDYPNLKNLDSLREVREDFLKRAFKNDEASLGAYVLVLLSCKYFESVFEKVQEWL
Sbjct: 361 KDELLGDYPNLKNLDSLREVREDFLKRAFKNDEASLGAYVLVLLSCKYFESVFEKVQEWL 420

Query: 421 DFIARLIALRGHVHKITKELERLEEEDLEKLEKQALEYFNKIANKIYLKEKR 472
           DFIARLIALRGHVHKITKELERLEEEDLEKLEKQALEYFNKIANKIYLKEKR
Sbjct: 421 DFIARLIALRGHVHKITKELERLEEEDLEKLEKQALEYFNKIANKIYLKEKR 472



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.317    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 304,154,382
Number of Sequences: 1026957
Number of extensions: 13319998
Number of successful extensions: 43253
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43250
Number of HSP's gapped (non-prelim): 1
length of query: 472
length of database: 324,149,939
effective HSP length: 125
effective length of query: 347
effective length of database: 195,780,314
effective search space: 67935768958
effective search space used: 67935768958
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 99 (42.7 bits)