BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645082|ref|NP_207252.1| hypothetical protein
[Helicobacter pylori 26695]
(232 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207252.1| (NC_000915) hypothetical protein [Helicoba... 473 e-133
ref|XP_110553.1| (XM_110553) RIKEN cDNA 2700092H06 [Mus mus... 74 1e-12
ref|XP_132529.1| (XM_132529) RIKEN cDNA 2700092H06 [Mus mus... 74 1e-12
ref|NP_055702.1| (NM_014887) hypothetical protein from BCRA... 72 4e-12
dbj|BAA91748.1| (AK001542) unnamed protein product [Homo sa... 70 2e-11
dbj|BAA92651.1| (AB037834) KIAA1413 protein [Homo sapiens] 70 2e-11
ref|XP_047533.2| (XM_047533) Nedd4 binding protein 2 [Homo ... 70 2e-11
gb|AAH22188.1|AAH22188 (BC022188) Unknown (protein for MGC:... 62 5e-09
ref|NP_649378.1| (NM_141121) BcDNA:LD21293 gene product [Dr... 54 2e-06
gb|EAA01030.1| (AAAB01008987) agCP12456 [Anopheles gambiae ... 50 2e-05
dbj|BAB10845.1| (AB009053) contains similarity to nuclear p... 42 0.004
>ref|NP_207252.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64576 hypothetical protein HP0454 - Helicobacter pylori (strain 26695)
gb|AAD07520.1| (AE000560) H. pylori predicted coding region HP0454 [Helicobacter
pylori 26695]
Length = 232
Score = 473 bits (1218), Expect = e-133
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MELKLMGQKRMNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTD 60
MELKLMGQKRMNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTD
Sbjct: 1 MELKLMGQKRMNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTD 60
Query: 61 EEGIRHYVVDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGY 120
EEGIRHYVVDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGY
Sbjct: 61 EEGIRHYVVDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGY 120
Query: 121 KILLIDFKNRHLETPMDYGWDVAQCIKKPRGIAKHYDYDFYLERVLVEPQDYEKQNRELS 180
KILLIDFKNRHLETPMDYGWDVAQCIKKPRGIAKHYDYDFYLERVLVEPQDYEKQNRELS
Sbjct: 121 KILLIDFKNRHLETPMDYGWDVAQCIKKPRGIAKHYDYDFYLERVLVEPQDYEKQNRELS 180
Query: 181 LKALEFLKYNFDFDVIFYSFGEQLMPILTRMLVSVSKSHRKRLENYGKDIKT 232
LKALEFLKYNFDFDVIFYSFGEQLMPILTRMLVSVSKSHRKRLENYGKDIKT
Sbjct: 181 LKALEFLKYNFDFDVIFYSFGEQLMPILTRMLVSVSKSHRKRLENYGKDIKT 232
>ref|XP_110553.1| (XM_110553) RIKEN cDNA 2700092H06 [Mus musculus]
Length = 206
Score = 74.3 bits (181), Expect = 1e-12
Identities = 45/117 (38%), Positives = 68/117 (57%), Gaps = 13/117 (11%)
Query: 8 QKRMNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSIS--VHSTDEYFIQTDEEGIR 65
++++NK KL+I+ R +PG GKT+L + + LG S V STD+YF D G R
Sbjct: 17 EEKLNKLQKLLILLRGLPGSGKTTLSRIL------LGQSRDGIVFSTDDYFHHQD--GYR 68
Query: 66 HYVVDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGYKI 122
+ V +L + H NQ KQA++ V+ DNTN ++W+ KPY +MA GY++
Sbjct: 69 YNV---NQLGDAHDWNQNRAKQAIDQGRSPVIIDNTNTQAWEMKPYVEMAIGKGYRV 122
>ref|XP_132529.1| (XM_132529) RIKEN cDNA 2700092H06 [Mus musculus]
Length = 190
Score = 74.3 bits (181), Expect = 1e-12
Identities = 45/117 (38%), Positives = 68/117 (57%), Gaps = 13/117 (11%)
Query: 8 QKRMNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSIS--VHSTDEYFIQTDEEGIR 65
++++NK KL+I+ R +PG GKT+L + + LG S V STD+YF D G R
Sbjct: 17 EEKLNKLQKLLILLRGLPGSGKTTLSRIL------LGQSRDGIVFSTDDYFHHQD--GYR 68
Query: 66 HYVVDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGYKI 122
+ V +L + H NQ KQA++ V+ DNTN ++W+ KPY +MA GY++
Sbjct: 69 YNV---NQLGDAHDWNQNRAKQAIDQGRSPVIIDNTNTQAWEMKPYVEMAIGKGYRV 122
>ref|NP_055702.1| (NM_014887) hypothetical protein from BCRA2 region [Homo sapiens]
gb|AAC50875.1| (U50532) unknown [Homo sapiens]
emb|CAB42441.1| (AL049783) hypothetical protein [Homo sapiens]
gb|AAH10643.1|AAH10643 (BC010643) hypothetical protein from BCRA2 region [Homo sapiens]
Length = 583
Score = 72.4 bits (176), Expect = 4e-12
Identities = 43/117 (36%), Positives = 68/117 (57%), Gaps = 13/117 (11%)
Query: 8 QKRMNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSIS--VHSTDEYFIQTDEEGIR 65
++++NK KL+I+ R +PG GKT+L + + LG + V STD+YF D G R
Sbjct: 394 EEKLNKLQKLLILLRGLPGSGKTTLSRIL------LGQNRDGIVFSTDDYFHHQD--GYR 445
Query: 66 HYVVDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGYKI 122
+ V +L + H NQ KQA++ V+ DNTN ++W+ KPY ++A GY++
Sbjct: 446 YNV---NQLGDAHDWNQNRAKQAIDQGRSPVIIDNTNIQAWEMKPYVEVAIGKGYRV 499
>dbj|BAA91748.1| (AK001542) unnamed protein product [Homo sapiens]
Length = 659
Score = 69.7 bits (169), Expect = 2e-11
Identities = 37/116 (31%), Positives = 65/116 (55%), Gaps = 9/116 (7%)
Query: 8 QKRMNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGIRHY 67
+K+ + ++++ R +PG GK+ L + ++E S + STD+YF + Y
Sbjct: 432 RKKTSYVGLVLVLLRGLPGSGKSFLARTLQED----NPSGVILSTDDYFYINGQ-----Y 482
Query: 68 VVDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGYKIL 123
D K L E H+ NQ K+A E +I ++ DNTN ++W+ KPY ++++ YK+L
Sbjct: 483 QFDVKYLGEAHEWNQNRAKEAFEKKISPIIIDNTNLQAWEMKPYVALSQKHKYKVL 538
>dbj|BAA92651.1| (AB037834) KIAA1413 protein [Homo sapiens]
Length = 1399
Score = 69.7 bits (169), Expect = 2e-11
Identities = 37/116 (31%), Positives = 65/116 (55%), Gaps = 9/116 (7%)
Query: 8 QKRMNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGIRHY 67
+K+ + ++++ R +PG GK+ L + ++E S + STD+YF + Y
Sbjct: 78 RKKTSYVGLVLVLLRGLPGSGKSFLARTLQED----NPSGVILSTDDYFYINGQ-----Y 128
Query: 68 VVDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGYKIL 123
D K L E H+ NQ K+A E +I ++ DNTN ++W+ KPY ++++ YK+L
Sbjct: 129 QFDVKYLGEAHEWNQNRAKEAFEKKISPIIIDNTNLQAWEMKPYVALSQKHKYKVL 184
>ref|XP_047533.2| (XM_047533) Nedd4 binding protein 2 [Homo sapiens]
ref|NP_060647.1| (NM_018177) Nedd4 binding protein 2 [Homo sapiens]
Length = 1753
Score = 69.7 bits (169), Expect = 2e-11
Identities = 37/116 (31%), Positives = 65/116 (55%), Gaps = 9/116 (7%)
Query: 8 QKRMNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGIRHY 67
+K+ + ++++ R +PG GK+ L + ++E S + STD+YF + Y
Sbjct: 432 RKKTSYVGLVLVLLRGLPGSGKSFLARTLQED----NPSGVILSTDDYFYINGQ-----Y 482
Query: 68 VVDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGYKIL 123
D K L E H+ NQ K+A E +I ++ DNTN ++W+ KPY ++++ YK+L
Sbjct: 483 QFDVKYLGEAHEWNQNRAKEAFEKKISPIIIDNTNLQAWEMKPYVALSQKHKYKVL 538
>gb|AAH22188.1|AAH22188 (BC022188) Unknown (protein for MGC:33246) [Homo sapiens]
Length = 173
Score = 62.0 bits (149), Expect = 5e-09
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 10/106 (9%)
Query: 10 RMNKSNKLVIINRAIPGGGKTSLIKQIE-ELAKSLGHSISVHSTDEYFIQTDEEGIRHYV 68
R + K + + R +PG GKT+L +Q++ + ++L + STD++F + D Y
Sbjct: 36 RRHSFRKHLYLLRGLPGSGKTTLARQLQHDFPRAL-----IFSTDDFFFREDGA----YE 86
Query: 69 VDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDM 114
+ L E H+ NQ+ ++A+ N I ++ DNTN +W+ KPY M
Sbjct: 87 FNPDFLEEAHEWNQKRARKAMRNGISPIIIDNTNLHAWEMKPYAVM 132
>ref|NP_649378.1| (NM_141121) BcDNA:LD21293 gene product [Drosophila melanogaster]
gb|AAD34752.1| (AF132164) unknown [Drosophila melanogaster]
gb|AAF51804.1| (AE003596) BcDNA:LD21293 gene product [alt 2] [Drosophila
melanogaster]
Length = 969
Score = 53.5 bits (127), Expect = 2e-06
Identities = 33/120 (27%), Positives = 58/120 (47%), Gaps = 6/120 (5%)
Query: 9 KRMNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTDE--EGIRH 66
+R +KL+II R G GK++L + + A H + H ++ + +D+ + R
Sbjct: 96 QRAQAGHKLMIIMRGPSGSGKSTLAESLLRQA----HLLDRHQVRDFVLSSDDYFKTRRG 151
Query: 67 YVVDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGYKILLID 126
YV + L H+ NQ+ + + ++ DNTN W+ +PY A GY I L++
Sbjct: 152 YVFNPTLLPAAHEWNQQRVRDKAASGWSPIIVDNTNTMVWEMQPYVQFAVRHGYVIELLE 211
>gb|EAA01030.1| (AAAB01008987) agCP12456 [Anopheles gambiae str. PEST]
Length = 497
Score = 50.1 bits (118), Expect = 2e-05
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 25/186 (13%)
Query: 5 LMGQKRMNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGI 64
L+ R + ++ + R +PG GK+ L + I+ +S G S V S D+YF+ EE
Sbjct: 164 LLPPGRYQRPLRICFLIRGLPGSGKSHLARLIKNKEQSFGQSPRVLSLDDYFLVDKEEEE 223
Query: 65 RH-------------YVVDKKKLNEYHQNNQEAFKQALENRI-DIVVCDNTNFESWQSKP 110
+ Y D + + Y QN +AFK+ + R+ D V+ D N
Sbjct: 224 KDPVTGRITKLTRSVYEFDAEMEDVYVQNLLKAFKRTISERLFDFVIVDCCNHRLETYCE 283
Query: 111 YTDMAREFGYKILLIDFKNRHLETPMDYGWDVAQCIKKPRGIAKHYDYDFYLERVLVEPQ 170
+ + AR G+K+ + DV C ++ + Y + + P
Sbjct: 284 FHNYARSNGFKVYTCTMQT-----------DVEDCARQNIHNRTEAEIQAYADNWAMAPD 332
Query: 171 DYEKQN 176
D+ + N
Sbjct: 333 DHVQIN 338
>dbj|BAB10845.1| (AB009053) contains similarity to nuclear protein
ZAP~gene_id:MQB2.8 [Arabidopsis thaliana]
Length = 644
Score = 42.4 bits (98), Expect = 0.004
Identities = 31/139 (22%), Positives = 60/139 (42%), Gaps = 22/139 (15%)
Query: 10 RMNKSNKLVIINRAIPGGGKTSLIKQIEEL-AKSLGHSISVHSTDEYFIQTDE------- 61
R + + VII R +PG GK+ L K + ++ ++ G + +HS D+YF+ E
Sbjct: 270 RSTRPDHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPRIHSMDDYFMTEVEKVEESDS 329
Query: 62 -------------EGIRHYVVDKKKLNEYHQNNQEAFKQALEN-RIDIVVCDNTNFESWQ 107
+ + Y + + Y + +AFK+ LE+ V+ D+ N
Sbjct: 330 TSLSSGRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKRTLEDGAFSFVIVDDRNLRVAD 389
Query: 108 SKPYTDMAREFGYKILLID 126
+ A+ GY+ +++
Sbjct: 390 FTQFWATAKRSGYEAYILE 408
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,179,493
Number of Sequences: 1026957
Number of extensions: 6408197
Number of successful extensions: 17438
Number of sequences better than 1.0e-02: 11
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17423
Number of HSP's gapped (non-prelim): 11
length of query: 232
length of database: 324,149,939
effective HSP length: 117
effective length of query: 115
effective length of database: 203,995,970
effective search space: 23459536550
effective search space used: 23459536550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 95 (41.2 bits)