BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645085|ref|NP_207255.1| hypothetical protein
[Helicobacter pylori 26695]
         (87 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207255.1|  (NC_000915) hypothetical protein [Helicoba...   173  4e-43
gb|AAM03031.1|AF487344_5  (AF487344) unknown [Helicobacter p...   172  9e-43
ref|NP_222736.1|  (NC_000921) putative [Helicobacter pylori ...   117  2e-26
ref|NP_206818.1|  (NC_000915) hypothetical protein [Helicoba...   117  3e-26
ref|NP_207240.1|  (NC_000915) hypothetical protein [Helicoba...    55  1e-07

>ref|NP_207255.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64577 hypothetical protein HP0457 - Helicobacter pylori (strain 26695)
 gb|AAD07535.1| (AE000561) H. pylori predicted coding region HP0457 [Helicobacter
          pylori 26695]
          Length = 87

 Score =  173 bits (438), Expect = 4e-43
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSI 60
          MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSI
Sbjct: 1  MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSI 60

Query: 61 AEFFDEDISDILIAHSKIKTKANSFYA 87
          AEFFDEDISDILIAHSKIKTKANSFYA
Sbjct: 61 AEFFDEDISDILIAHSKIKTKANSFYA 87



>gb|AAM03031.1|AF487344_5 (AF487344) unknown [Helicobacter pylori]
          Length = 87

 Score =  172 bits (435), Expect = 9e-43
 Identities = 86/87 (98%), Positives = 87/87 (99%)

Query: 1  MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSI 60
          MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIM+PWLDILNSFVLYVCFLLIFSI
Sbjct: 1  MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSI 60

Query: 61 AEFFDEDISDILIAHSKIKTKANSFYA 87
          AEFFDEDISDILIAHSKIKTKANSFYA
Sbjct: 61 AEFFDEDISDILIAHSKIKTKANSFYA 87



>ref|NP_222736.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||D71984 hypothetical protein jhp0014 - Helicobacter pylori (strain J99)
 gb|AAD05596.1| (AE001441) putative [Helicobacter pylori J99]
          Length = 87

 Score =  117 bits (294), Expect = 2e-26
 Identities = 54/87 (62%), Positives = 72/87 (82%)

Query: 1  MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSI 60
          M ++  SV NL+EIS KEKFLWLNAKS+L+S F PFI++PW+D+L++F+LY+ FL +FS+
Sbjct: 1  MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSV 60

Query: 61 AEFFDEDISDILIAHSKIKTKANSFYA 87
           EFFDEDI+DI+IA SKIKTK   + A
Sbjct: 61 LEFFDEDIADIIIAKSKIKTKTKCYRA 87



>ref|NP_206818.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64521 hypothetical protein HP0016 - Helicobacter pylori (strain 26695)
 gb|AAD07092.1| (AE000524) H. pylori predicted coding region HP0016 [Helicobacter
          pylori 26695]
          Length = 87

 Score =  117 bits (293), Expect = 3e-26
 Identities = 53/87 (60%), Positives = 72/87 (81%)

Query: 1  MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSI 60
          M ++  SV NL+EIS KEKFLWLNAKS+L+S F PFI++PW+D+L++F+LY+ FL +FS+
Sbjct: 1  MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSV 60

Query: 61 AEFFDEDISDILIAHSKIKTKANSFYA 87
           EFFDEDI+DI++A SKIKTK   + A
Sbjct: 61 LEFFDEDIADIIVAKSKIKTKTKCYRA 87



>ref|NP_207240.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64575 hypothetical protein HP0442 - Helicobacter pylori (strain 26695)
 gb|AAD07509.1| (AE000559) H. pylori predicted coding region HP0442 [Helicobacter
          pylori 26695]
          Length = 88

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 35/90 (38%), Positives = 52/90 (56%), Gaps = 7/90 (7%)

Query: 1  MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWL---DILNSFVLYVCFLLI 57
          + +V +   N++EIS +E FL LN  S+++S    F+M  WL     L +  L    + I
Sbjct: 3  LHIVCVESINIREISKRETFLGLNLDSWIVS----FLMSAWLLSFQPLYAMGLMASCVFI 58

Query: 58 FSIAEFFDEDISDILIAHSKIKTKANSFYA 87
          F I EFFDEDI+ IL A   ++T A ++YA
Sbjct: 59 FYILEFFDEDITAILHALFTLRTGARNYYA 88



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.329    0.143    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,576,013
Number of Sequences: 1026957
Number of extensions: 1578017
Number of successful extensions: 5066
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5062
Number of HSP's gapped (non-prelim): 5
length of query: 87
length of database: 324,149,939
effective HSP length: 63
effective length of query: 24
effective length of database: 259,451,648
effective search space: 6226839552
effective search space used: 6226839552
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 90 (39.3 bits)