BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645088|ref|NP_207258.1| hypothetical protein
[Helicobacter pylori 26695]
(162 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207258.1| (NC_000915) hypothetical protein [Helicoba... 312 8e-85
gb|AAM03034.1|AF487344_8 (AF487344) putative VirB8 [Helicob... 306 7e-83
emb|CAB65343.1| (AJ007010) liver stage antigen-3 [Plasmodiu... 54 8e-07
ref|NP_473111.1| (NC_000910) RESA-H3 antigen [Plasmodium fa... 51 5e-06
ref|NP_177881.1| (NM_106406) hypothetical protein [Arabidop... 46 2e-04
ref|NP_003557.1| (NM_003566) early endosome antigen 1, 162k... 44 7e-04
pir||S44243 endosomal protein - human >gi|475934|emb|CAA556... 44 7e-04
ref|XP_018197.4| (XM_018197) similar to endosomal protein -... 44 9e-04
sp|Q26005|RESA_PLAFP Ring-infected erythrocyte surface anti... 43 0.001
emb|CAB65344.1| (AJ007011) liver stage antigen-3 [Plasmodiu... 43 0.001
sp|P13830|RESA_PLAFF Ring-infected erythrocyte surface anti... 42 0.002
emb|CAA28817.1| (X05182) ring-infected eryrthrocyte surface... 42 0.002
gb|AAK19244.1|AF312916_1 (AF312916) reticulocyte binding pr... 42 0.002
emb|CAC14221.1| (AJ277625) YapB protein [Yersinia pestis] 42 0.002
gb|AAA72295.1| (L04159) [Plasmodium falciparum 3' end.], ge... 42 0.002
gb|AAF15366.1|AF206632_1 (AF206632) ring-infested erythrocy... 42 0.003
prf||1509336A ryanodine receptor [Oryctolagus cuniculus] 41 0.006
sp|P11716|RYR1_RABIT Ryanodine receptor 1 (Skeletal muscle-... 41 0.006
gb|AAD49332.1|AF163684_1 (AF163684) M protein precursor [St... 40 0.007
pir||T14156 kinesin-related protein - African clawed frog >... 40 0.007
emb|CAC93932.1| (AJ413934) Lef protein [Bacillus anthracis]... 40 0.009
ref|NP_652928.1| (NC_003980) lethal factor [Bacillus anthra... 40 0.009
>ref|NP_207258.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64577 hypothetical protein HP0460 - Helicobacter pylori (strain 26695)
gb|AAD07537.1| (AE000561) H. pylori predicted coding region HP0460 [Helicobacter
pylori 26695]
Length = 162
Score = 312 bits (800), Expect = 8e-85
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MSNLQELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTK 60
MSNLQELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTK
Sbjct: 1 MSNLQELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTK 60
Query: 61 ENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQL 120
ENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQL
Sbjct: 61 ENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQL 120
Query: 121 ESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIIALSSQI 162
ESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIIALSSQI
Sbjct: 121 ESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIIALSSQI 162
>gb|AAM03034.1|AF487344_8 (AF487344) putative VirB8 [Helicobacter pylori]
Length = 352
Score = 306 bits (783), Expect = 7e-83
Identities = 159/162 (98%), Positives = 160/162 (98%)
Query: 1 MSNLQELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTK 60
MSNLQELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTK
Sbjct: 1 MSNLQELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTK 60
Query: 61 ENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQL 120
ENQEELIK+IQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQL
Sbjct: 61 ENQEELIKSIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQL 120
Query: 121 ESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIIALSSQI 162
ESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIIALS I
Sbjct: 121 ESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIIALSIAI 162
>emb|CAB65343.1| (AJ007010) liver stage antigen-3 [Plasmodium falciparum]
Length = 1786
Score = 53.5 bits (127), Expect = 8e-07
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 3 NLQELREHLKELENSFEIGSFTKENIKEYAKC---FFMSLSMFLEEQEKNQQEEFLEQDT 59
N+Q E EL NS ++ KENI E ++ F SL +++++++ EE +E+
Sbjct: 172 NVQVSDELFNELLNSVDVNGEVKENILEESQVNDDIFNSLVKSVQQEQQHNVEEKVEESV 231
Query: 60 KENQEELI-KNIQTSIAKNQELEKISF----------EKWENKIQERVLPKLKRIVTHKL 108
+EN EE + +N++ ++ +N + S E ++ I+E V P ++ IV +
Sbjct: 232 EENDEESVEENVEENVEENDDGSVASSVEESIASSVDESIDSSIEENVAPTVEEIVAPSV 291
Query: 109 QESITSSINTQLE 121
ES+ S+ +E
Sbjct: 292 VESVAPSVEESVE 304
>ref|NP_473111.1| (NC_000910) RESA-H3 antigen [Plasmodium falciparum]
pir||B71603 RESA-H3 antigen PFB0915w - malaria parasite (Plasmodium falciparum)
gb|AAC71972.1| (AE001424) RESA-H3 antigen [Plasmodium falciparum 3D7]
Length = 1558
Score = 50.8 bits (120), Expect = 5e-06
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 3 NLQELREHLKELENSFEIGSFTKENIKEYAKC---FFMSLSMFLEEQEKNQQEEFLEQDT 59
N+Q E EL NS ++ KENI E ++ F SL +++++++ EE +E+
Sbjct: 172 NVQVSDELFNELLNSVDVNGEVKENILEESQVNDDIFNSLVKSVQQEQQHNVEEKVEESV 231
Query: 60 KENQEELI-KNIQTSIAKNQELEKISF----------EKWENKIQERVLPKLKRIVTHKL 108
+EN EE + +N++ ++ +N + S E ++ I+E V P ++ IV +
Sbjct: 232 EENDEESVEENVEENVEENDDESVASSVEESIASSVDESIDSSIEENVAPTVEEIVAPTV 291
Query: 109 QESITSSI 116
+E + S+
Sbjct: 292 EEIVAPSV 299
>ref|NP_177881.1| (NM_106406) hypothetical protein [Arabidopsis thaliana]
gb|AAG51666.1|AC010704_10 (AC010704) hypothetical protein; 57314-54712 [Arabidopsis thaliana]
Length = 779
Score = 45.8 bits (107), Expect = 2e-04
Identities = 40/168 (23%), Positives = 75/168 (43%), Gaps = 23/168 (13%)
Query: 1 MSNLQELREHLKELENSFEIGSFTKENIKEYAKC------------------FFMSLSMF 42
+ N + L KELE E KE +K KC S +
Sbjct: 384 IENSEVLTSRTKELEEKLEKLEAEKEELKSEVKCNREKAVVHVENSLAAEIEVLTSRTKE 443
Query: 43 LEEQ-EKNQQEEF-LEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKL 100
LEEQ EK + E+ LE + K N+EE + ++ S+A E+ ++ E K+++ + K
Sbjct: 444 LEEQLEKLEAEKVELESEVKCNREEAVAQVENSLATEIEVLTCRIKQLEEKLEKLEVEKD 503
Query: 101 KRIVTHKLQESITSSINTQLESFKKDELDLSS---VFEIQRKNTQIAY 145
+ K + S++ +LE+ ++++L + E+++ QI++
Sbjct: 504 ELKSEVKCNREVESTLRFELEAIACEKMELENKLEKLEVEKAELQISF 551
>ref|NP_003557.1| (NM_003566) early endosome antigen 1, 162kD; early
endosome-associated protein [Homo sapiens]
pir||A57013 early endosome antigen 1 - human
gb|AAA79121.1| (L40157) endosome-associated protein [Homo sapiens]
Length = 1410
Score = 43.9 bits (102), Expect = 7e-04
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 6 ELR--EHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQE-----EFLEQD 58
ELR E K+LE EI S T+ ++++ ++ S+ L +QE+ +Q E L Q+
Sbjct: 764 ELRATELSKQLEMEKEIVSSTRLDLQKKSEAL-ESIKQKLTKQEEEKQILKQDFETLSQE 822
Query: 59 TKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINT 118
TK EEL IQT++ EL+K+ EK E ++ +L V KL + S N+
Sbjct: 823 TKIQHEELNNRIQTTVT---ELQKVKMEK------EALMTELS-TVKDKLSKVSDSLKNS 872
Query: 119 QLESFKKDELDLSSVFEIQRKNTQIAYRLAI 149
+ E K+++ +++ ++++ ++ ++L +
Sbjct: 873 KSEFEKENQKGKAAILDLEKTCKELKHQLQV 903
>pir||S44243 endosomal protein - human
emb|CAA55632.1| (X78998) endosomal protein [Homo sapiens]
Length = 1411
Score = 43.9 bits (102), Expect = 7e-04
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 6 ELR--EHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQE-----EFLEQD 58
ELR E K+LE EI S T+ ++++ ++ S+ L +QE+ +Q E L Q+
Sbjct: 764 ELRATELSKQLEMEKEIVSSTRLDLQKKSEAL-ESIKQKLTKQEEEKQILKQDFETLSQE 822
Query: 59 TKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINT 118
TK EEL IQT++ EL+K+ EK E ++ +L V KL + S N+
Sbjct: 823 TKIQHEELNNRIQTTVT---ELQKVKMEK------EALMTELS-TVKDKLSKVSDSLKNS 872
Query: 119 QLESFKKDELDLSSVFEIQRKNTQIAYRLAI 149
+ E K+++ +++ ++++ ++ ++L +
Sbjct: 873 KSEFEKENQKGKAAILDLEKTCKELKHQLQV 903
>ref|XP_018197.4| (XM_018197) similar to endosomal protein - human [Homo sapiens]
Length = 1411
Score = 43.5 bits (101), Expect = 9e-04
Identities = 42/151 (27%), Positives = 79/151 (51%), Gaps = 18/151 (11%)
Query: 6 ELR--EHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKN-----QQEEFLEQD 58
ELR E K+LE EI S T+ ++++ ++ S+ L +QE+ Q E L Q+
Sbjct: 764 ELRATELSKQLEMEKEIVSSTRLDLQKKSEAL-ESIKQKLTKQEEEKKILKQDFETLSQE 822
Query: 59 TKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINT 118
TK EEL IQT++ EL+K+ EK E ++ +L V KL + S N+
Sbjct: 823 TKIQHEELNNRIQTTVT---ELQKVKMEK------EALMTELS-TVKDKLSKVSDSLKNS 872
Query: 119 QLESFKKDELDLSSVFEIQRKNTQIAYRLAI 149
+ E K+++ +++ ++++ ++ ++L +
Sbjct: 873 KSEFEKENQKGKAAILDLEKTCKELKHQLQV 903
>sp|Q26005|RESA_PLAFP Ring-infected erythrocyte surface antigen
pir||S21342 ring-infected erythrocyte surface antigen - malaria parasite
(Plasmodium falciparum) (fragments)
emb|CAA38918.1| (X55124) ring-infected erythrocyte surface antigen [Plasmodium
falciparum]
Length = 304
Score = 43.1 bits (100), Expect = 0.001
Identities = 27/134 (20%), Positives = 73/134 (54%), Gaps = 13/134 (9%)
Query: 3 NLQELREHLKE-----LENSFE--IGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFL 55
N++E+ E+++E +E + E + +EN++E + ++ +EE + EE +
Sbjct: 172 NVEEVEENVEENVEENVEENVEENVEENVEENVEEVEENVEENVEENVEENVEENVEENV 231
Query: 56 EQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSS 115
E++ +EN EE N++ ++ +E ++ + E+ E ++E V ++ V ++E++ +
Sbjct: 232 EENVEENVEE---NVEENV---EEYDEENVEEVEENVEENVEENVEENVEENVEENVEEN 285
Query: 116 INTQLESFKKDELD 129
+ +E + ++ ++
Sbjct: 286 VEENVEEYDEENVE 299
>emb|CAB65344.1| (AJ007011) liver stage antigen-3 [Plasmodium falciparum]
Length = 572
Score = 42.7 bits (99), Expect = 0.001
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 9 EHLKELENSFEIGSFTKENIKEYAKC----FFMSLSMFLEEQEKNQQEEFLEQDTKENQE 64
E EL NS ++ KENI E ++ F + +EQ+ N +E+ +E+ +EN E
Sbjct: 3 ELFNELLNSVDVNGEVKENILEESQVNDDIFNSLVKSVQQEQQHNVEEK-VEESVEENDE 61
Query: 65 ELI-KNIQTSIAKNQELEKISF----------EKWENKIQERVLPKLKRIVTHKLQESIT 113
E + +N++ ++ +N + S E ++ I+E V P ++ IV ++E +
Sbjct: 62 ESVEENVEENVEENDDGSVASSVEESIASSVDESIDSSIEENVAPTVEEIVAPTVEEIVA 121
Query: 114 SSI 116
S+
Sbjct: 122 PSV 124
>sp|P13830|RESA_PLAFF Ring-infected erythrocyte surface antigen precursor
pir||A25526 ring-infected erythrocyte surface antigen precursor - malaria
parasite (Plasmodium falciparum) (strain FC27/Papua New
Guinea)
Length = 1073
Score = 42.4 bits (98), Expect = 0.002
Identities = 23/95 (24%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 44 EEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKN-QELEKISFEKWENKIQERVLPKLKR 102
EE ++ EE +E D +EN EE ++ ++ ++ +N +E + + E+ E ++E V ++
Sbjct: 917 EENVEHDAEENVEHDAEENVEENVEEVEENVEENVEENVEENVEEVEENVEENVEENVEE 976
Query: 103 IVTHKLQESITSSINTQLESFKKDELDLSSVFEIQ 137
V ++E++ ++ +E +E D +V E++
Sbjct: 977 NVEENVEENVEENVEENVEE-NVEEYDEENVEEVE 1010
>emb|CAA28817.1| (X05182) ring-infected eryrthrocyte surface antigen [Plasmodium
falciparum]
Length = 318
Score = 42.4 bits (98), Expect = 0.002
Identities = 23/95 (24%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 44 EEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKN-QELEKISFEKWENKIQERVLPKLKR 102
EE ++ EE +E D +EN EE ++ ++ ++ +N +E + + E+ E ++E V ++
Sbjct: 162 EENVEHDAEENVEHDAEENVEENVEEVEENVEENVEENVEENVEEVEENVEENVEENVEE 221
Query: 103 IVTHKLQESITSSINTQLESFKKDELDLSSVFEIQ 137
V ++E++ ++ +E +E D +V E++
Sbjct: 222 NVEENVEENVEENVEENVEE-NVEEYDEENVEEVE 255
>gb|AAK19244.1|AF312916_1 (AF312916) reticulocyte binding protein 2 homolog A [Plasmodium
falciparum]
Length = 3130
Score = 42.0 bits (97), Expect = 0.002
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 44 EEQEKNQQEEFL---EQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVL--P 98
E+QE+ Q+EE L EQ+ + +E L + Q + K +EL++ E+ E + QE++
Sbjct: 2764 EKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEE 2823
Query: 99 KLKRIVTHKLQESITSSINTQLESFKKDELDLSSVFEIQRKNTQIAYR 146
+LKR +LQ+ Q K++EL ++RK ++A R
Sbjct: 2824 ELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLERKKIELAER 2871
>emb|CAC14221.1| (AJ277625) YapB protein [Yersinia pestis]
Length = 1052
Score = 42.0 bits (97), Expect = 0.002
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 7 LREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEEL 66
L+E L + E E ++ A+ S L+ +K + E L +++ E
Sbjct: 218 LQEKLTQAETKLETAKNNPKSKLSLAEAKHKRTSKNLKNPKKQAKSEALRN--QKDYERE 275
Query: 67 IKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLESFKKD 126
+KN+QT I E K+S EK E QE+ L K+I + + +++ IN ++ +
Sbjct: 276 LKNLQTPITTATEELKVSQEKVEVLTQEKALISTKKIASDAITDNLQGEINRAQQAQLQA 335
Query: 127 ELD 129
E D
Sbjct: 336 EQD 338
>gb|AAA72295.1| (L04159) [Plasmodium falciparum 3' end.], gene product [Plasmodium
falciparum 3D7]
Length = 503
Score = 42.0 bits (97), Expect = 0.002
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 44 EEQEKNQQEEFL---EQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVL--P 98
E+QE+ Q+EE L EQ+ + +E L + Q + K +EL++ E+ E + QE++
Sbjct: 137 EKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEE 196
Query: 99 KLKRIVTHKLQESITSSINTQLESFKKDELDLSSVFEIQRKNTQIAYR 146
+LKR +LQ+ Q K++EL ++RK ++A R
Sbjct: 197 ELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLERKKIELAER 244
>gb|AAF15366.1|AF206632_1 (AF206632) ring-infested erythrocyte surface antigen [Plasmodium
falciparum]
Length = 274
Score = 41.6 bits (96), Expect = 0.003
Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 5 QELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQE 64
+E EH E + +EN++E + ++ +EE + EE +E++ +EN E
Sbjct: 87 EENVEHDAEENVEHDAEENAEENVEENVEEVEENVEENVEENVEENVEENVEENVEENVE 146
Query: 65 ELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLESFK 124
E+ +N++ ++ +N E E E ++E V ++ V ++E++ + +E +
Sbjct: 147 EVEENVEENVEENVE------ENVEENVEENVEENVEENVEENVEENV-EEVEENVEEY- 198
Query: 125 KDELDLSSVFEIQRKNTQ 142
DE ++ V E +N +
Sbjct: 199 -DEENVEEVEENVEENVE 215
Score = 41.6 bits (96), Expect = 0.003
Identities = 27/126 (21%), Positives = 71/126 (55%), Gaps = 4/126 (3%)
Query: 3 NLQELREHLKE-LENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKE 61
N++E+ E+++E +E + E +EN++E + + +EE + EE +E++ +E
Sbjct: 113 NVEEVEENVEENVEENVEEN--VEENVEENVEENVEEVEENVEENVEENVEENVEENVEE 170
Query: 62 NQEELIK-NIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQL 120
N EE ++ N++ ++ +N E + + E+++ + E V ++ V ++E++ ++
Sbjct: 171 NVEENVEENVEENVEENVEEVEENVEEYDEENVEEVEENVEENVEENVEENVEENVEEVE 230
Query: 121 ESFKKD 126
E+ +++
Sbjct: 231 ENVEEN 236
>prf||1509336A ryanodine receptor [Oryctolagus cuniculus]
Length = 5037
Score = 40.8 bits (94), Expect = 0.006
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 11 LKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEELIKNI 70
LK + +G F E++K+ K + +F EE+E+ ++EE E++ +E++EE ++
Sbjct: 1842 LKLVSTLLVMGIFGDEDVKQILK--MIEPEVFTEEEEEEEEEEEEEEEEEEDEEEKEED- 1898
Query: 71 QTSIAKNQELEKISFEKWENKIQERVLPKLKR-IVTHKLQESITSSINTQLESFKKDEL 128
+E EK EK E + E L+ ++ KL ES+ + LE F EL
Sbjct: 1899 ------EEEEEKEDAEKEEEEAPEGEKEDLEEGLLQMKLPESVKLQMCNLLEYFCDQEL 1951
>sp|P11716|RYR1_RABIT Ryanodine receptor 1 (Skeletal muscle-type ryanodine receptor) (RyR1)
(RYR-1) (Skeletal muscle calcium release channel)
pir||B35041 ryanodine receptor, skeletal muscle - rabbit
emb|CAA33762.1| (X15750) ryanodine receptor (AA 1-5037) [Oryctolagus cuniculus]
emb|CAA33279.1| (X15209) ryanodine receptor [Oryctolagus cuniculus]
Length = 5037
Score = 40.8 bits (94), Expect = 0.006
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 11 LKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEELIKNI 70
LK + +G F E++K+ K + +F EE+E+ ++EE E++ +E++EE ++
Sbjct: 1842 LKLVSTLLVMGIFGDEDVKQILK--MIEPEVFTEEEEEEEEEEEEEEEEEEDEEEKEED- 1898
Query: 71 QTSIAKNQELEKISFEKWENKIQERVLPKLKR-IVTHKLQESITSSINTQLESFKKDEL 128
+E EK EK E + E L+ ++ KL ES+ + LE F EL
Sbjct: 1899 ------EEEEEKEDAEKEEEEAPEGEKEDLEEGLLQMKLPESVKLQMCNLLEYFCDQEL 1951
>gb|AAD49332.1|AF163684_1 (AF163684) M protein precursor [Streptococcus pyogenes]
Length = 220
Score = 40.4 bits (93), Expect = 0.007
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 7 LREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEEL 66
L + +++L + +E KEN KEYA L EE+EK + E + D + + +
Sbjct: 73 LEDRIEKLGSDYE--KLEKEN-KEYAS----QLDKNQEEREKLELEYLRKSDKEYKEHQQ 125
Query: 67 IKNIQTSIAKN-QELEKISFEKWENKIQERVLPKLKRIVTHK-LQESITSSINTQLESFK 124
+ Q KN +ELE+ + + E + QE+ L K +++ T K + E+ S++ LE+ +
Sbjct: 126 YQQEQEERQKNLEELERQNKREIEKRYQEQ-LQKQQQLETEKQISEASRKSLSRDLEASR 184
Query: 125 KDELDLSSVFEIQRKNTQIA 144
+ DL + + ++ QI+
Sbjct: 185 AAKKDLEAEHQKLKEEKQIS 204
>pir||T14156 kinesin-related protein - African clawed frog
gb|AAC60300.1| (AF027728) kinesin-related protein [Xenopus laevis]
Length = 2954
Score = 40.4 bits (93), Expect = 0.007
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 4 LQELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQ 63
+Q + + KEL+ + E + +++KE + + L+ E Q+K +E+ L + KE +
Sbjct: 1686 MQVVTQEKKELQQTHEHLTAEVDHLKENIE---LGLNFKNEAQQKTTKEQCLLNENKELE 1742
Query: 64 ----------EELIKNI--------------QTSIAKNQELEKISFEKWENKIQERVLPK 99
EEL+K++ Q I NQE+E + E E K +R +
Sbjct: 1743 QSQHRLQCEIEELMKSLKDKESALETLKESEQKVINLNQEMEMVMLEMEELKNSQRTVIA 1802
Query: 100 LKRIVTHKLQESITSSINTQLESFKKDELDLSSVFEIQRKNTQIA 144
+ + L+ES+ SI TQ + K E ++Q +QI+
Sbjct: 1803 ERDQLQDDLRESVEMSIETQDDLRKAQEALQQQKDKVQELTSQIS 1847
>emb|CAC93932.1| (AJ413934) Lef protein [Bacillus anthracis]
emb|CAC93933.1| (AJ413935) Lef protein [Bacillus anthracis]
Length = 781
Score = 40.0 bits (92), Expect = 0.009
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 19/145 (13%)
Query: 11 LKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEK-----------NQQEEFLEQDT 59
LKE F + F ++N E + F + + ++E Q + N ++F EQ+
Sbjct: 199 LKEHPTDFSV-EFLEQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAFNYMDKFNEQEI 257
Query: 60 KENQEELIKNIQTSIAKNQELEKIS--FEKWENKIQER---VLPKLKRIVTHKLQESITS 114
+ EEL Q +A+ ++ EKI ++ W + + E +L KL+ + K + I S
Sbjct: 258 NLSLEEL--KDQRMLARYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHS 315
Query: 115 SINTQLESFKKDELDLSSVFEIQRK 139
+ E K+ ++D S + K
Sbjct: 316 LSQEEKELLKRIQIDSSDFLSTEEK 340
>ref|NP_652928.1| (NC_003980) lethal factor [Bacillus anthracis str. A2012]
gb|AAM26117.1| (AE011190) lethal factor [Bacillus anthracis str. A2012]
Length = 809
Score = 40.0 bits (92), Expect = 0.009
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 19/145 (13%)
Query: 11 LKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEK-----------NQQEEFLEQDT 59
LKE F + F ++N E + F + + ++E Q + N ++F EQ+
Sbjct: 227 LKEHPTDFSV-EFLEQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAFNYMDKFNEQEI 285
Query: 60 KENQEELIKNIQTSIAKNQELEKIS--FEKWENKIQER---VLPKLKRIVTHKLQESITS 114
+ EEL Q +A+ ++ EKI ++ W + + E +L KL+ + K + I S
Sbjct: 286 NLSLEEL--KDQRMLARYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHS 343
Query: 115 SINTQLESFKKDELDLSSVFEIQRK 139
+ E K+ ++D S + K
Sbjct: 344 LSQEEKELLKRIQIDSSDFLSTEEK 368
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.312 0.129 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,221,235
Number of Sequences: 1026957
Number of extensions: 3304652
Number of successful extensions: 27290
Number of sequences better than 1.0e-02: 22
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 27053
Number of HSP's gapped (non-prelim): 95
length of query: 162
length of database: 324,149,939
effective HSP length: 111
effective length of query: 51
effective length of database: 210,157,712
effective search space: 10718043312
effective search space used: 10718043312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 92 (40.0 bits)