BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645094|ref|NP_207264.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(255 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207264.1| (NC_000915) conserved hypothetical protein... 504 e-142
ref|NP_223136.1| (NC_000921) putative [Helicobacter pylori ... 491 e-138
ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacteriu... 47 3e-04
>ref|NP_207264.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||B64578 conserved hypothetical protein HP0466 - Helicobacter pylori
(strain 26695)
gb|AAD07528.1| (AE000561) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 255
Score = 504 bits (1298), Expect = e-142
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MEIILLIIAAVVLFYFYNTLKEYLKNPLNPKTKTEEYDLKNDPYLLAQSSPLDKFKQTQT 60
MEIILLIIAAVVLFYFYNTLKEYLKNPLNPKTKTEEYDLKNDPYLLAQSSPLDKFKQTQT
Sbjct: 1 MEIILLIIAAVVLFYFYNTLKEYLKNPLNPKTKTEEYDLKNDPYLLAQSSPLDKFKQTQT 60
Query: 61 GAYMRLLKFLDIQKNALDNALRTLFIHELEQPLNSEQQNLAKELLNEPVDKKENFESLCQ 120
GAYMRLLKFLDIQKNALDNALRTLFIHELEQPLNSEQQNLAKELLNEPVDKKENFESLCQ
Sbjct: 61 GAYMRLLKFLDIQKNALDNALRTLFIHELEQPLNSEQQNLAKELLNEPVDKKENFESLCQ 120
Query: 121 EIADHTHGEYTKRLKLVEFLMLLAYADGILDSKEKELFLDVGVFLQIDNQDFNELYDNFE 180
EIADHTHGEYTKRLKLVEFLMLLAYADGILDSKEKELFLDVGVFLQIDNQDFNELYDNFE
Sbjct: 121 EIADHTHGEYTKRLKLVEFLMLLAYADGILDSKEKELFLDVGVFLQIDNQDFNELYDNFE 180
Query: 181 RFNAIEIPMSLEEAKSLFEIQTHTTKQDLEKKALDLSAPYYHKMNDNKRYSEQDFISLKK 240
RFNAIEIPMSLEEAKSLFEIQTHTTKQDLEKKALDLSAPYYHKMNDNKRYSEQDFISLKK
Sbjct: 181 RFNAIEIPMSLEEAKSLFEIQTHTTKQDLEKKALDLSAPYYHKMNDNKRYSEQDFISLKK 240
Query: 241 IAIASQLLENDLKDS 255
IAIASQLLENDLKDS
Sbjct: 241 IAIASQLLENDLKDS 255
>ref|NP_223136.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71933 hypothetical protein jhp0418 - Helicobacter pylori (strain J99)
gb|AAD05999.1| (AE001476) putative [Helicobacter pylori J99]
Length = 255
Score = 491 bits (1264), Expect = e-138
Identities = 246/255 (96%), Positives = 250/255 (97%)
Query: 1 MEIILLIIAAVVLFYFYNTLKEYLKNPLNPKTKTEEYDLKNDPYLLAQSSPLDKFKQTQT 60
MEIILLI+AAVVLFYFYNTLKEYLKNPLNPKTKTEEYDLKNDPYLL QSSPLDKFKQTQ
Sbjct: 1 MEIILLIVAAVVLFYFYNTLKEYLKNPLNPKTKTEEYDLKNDPYLLVQSSPLDKFKQTQI 60
Query: 61 GAYMRLLKFLDIQKNALDNALRTLFIHELEQPLNSEQQNLAKELLNEPVDKKENFESLCQ 120
GAYMRLLKFLDIQKNALDNALRTLFIHELEQPLNSEQQNLAKELLNEPVDKKENFESLCQ
Sbjct: 61 GAYMRLLKFLDIQKNALDNALRTLFIHELEQPLNSEQQNLAKELLNEPVDKKENFESLCQ 120
Query: 121 EIADHTHGEYTKRLKLVEFLMLLAYADGILDSKEKELFLDVGVFLQIDNQDFNELYDNFE 180
EIADHTHGEYTKRLKLVEFLMLLAYADGILDSKEKELFLDVG FLQIDNQDFNELYDNFE
Sbjct: 121 EIADHTHGEYTKRLKLVEFLMLLAYADGILDSKEKELFLDVGAFLQIDNQDFNELYDNFE 180
Query: 181 RFNAIEIPMSLEEAKSLFEIQTHTTKQDLEKKALDLSAPYYHKMNDNKRYSEQDFISLKK 240
FN+IEIPMSLEEAK+LFEIQTHTT QDLEKKALDLSAPYYHKMNDNKRYSEQDFISLKK
Sbjct: 181 HFNSIEIPMSLEEAKNLFEIQTHTTMQDLEKKALDLSAPYYHKMNDNKRYSEQDFISLKK 240
Query: 241 IAIASQLLENDLKDS 255
IA+ASQLLENDLKDS
Sbjct: 241 IALASQLLENDLKDS 255
>ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94718.1| (AE010564) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 921
Score = 46.6 bits (109), Expect = 3e-04
Identities = 68/272 (25%), Positives = 119/272 (43%), Gaps = 56/272 (20%)
Query: 20 LKEYLKNPLNPKTKTEEY-DLKNDPYLLAQSSPLDKF--KQTQTGAYMRLL----KFLDI 72
L +KN + + K ++Y ++ + + A+ + K K+T+ +Y+ L + D+
Sbjct: 246 LNNLVKNIKDEENKIKKYLNILKENIIEAKQAKKSKIIVKETEK-SYLEYLEIENRLKDL 304
Query: 73 QKNALDNALRTLFIHELEQPLNSEQQNLAKEL-----------------LNEPVDKKENF 115
++N LDN L EQ LN + QN ++L +++ +KKEN
Sbjct: 305 REN-LDNLLE-------EQKLNIQYQNNIEKLELSNKNLKNDIINLEENISKNSEKKENL 356
Query: 116 ESLCQEIADHTHGEYTKRLKLVEFLMLLAYADGI-----------------LDSKEKELF 158
ES EI++ E LKL +++ LL + + +D +KEL
Sbjct: 357 ES---EISNLKIKEEDLDLKLKKYISLLDELEKLENFKDKKLEDKLKKTTEIDILKKELI 413
Query: 159 LDVGVFLQIDNQDFNELYDNFERFNAIEIPMSLEEAKSLFEIQTHTTKQDLEKKALDLSA 218
+F I+ + E NF+ E+ + LEE K +FEI+ T K+ K+ D
Sbjct: 414 SKKDLFKTINIEIIEEKLSNFQELEK-ELKL-LEEQKIIFEIEIKTLKKS-SKELSDKIC 470
Query: 219 PYYHKMNDNKRYSEQDFISLKKIAIASQLLEN 250
P+ ++ N E + KI+I + LEN
Sbjct: 471 PFLNEKCQNLEDKEAEDYFSSKISIKKEDLEN 502
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.136 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,422,838
Number of Sequences: 1026957
Number of extensions: 6223164
Number of successful extensions: 20245
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20241
Number of HSP's gapped (non-prelim): 4
length of query: 255
length of database: 324,149,939
effective HSP length: 118
effective length of query: 137
effective length of database: 202,969,013
effective search space: 27806754781
effective search space used: 27806754781
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 96 (41.6 bits)