BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645096|ref|NP_207266.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(495 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207266.1| (NC_000915) conserved hypothetical protein... 1003 0.0
ref|NP_223138.1| (NC_000921) putative [Helicobacter pylori ... 971 0.0
ref|NP_282599.1| (NC_002163) hypothetical protein Cj1459 [C... 76 8e-13
ref|NP_613857.1| (NC_003551) Heterodisulfide reductase, sub... 49 1e-04
>ref|NP_207266.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||D64578 conserved hypothetical protein HP0468 - Helicobacter pylori
(strain 26695)
gb|AAD07530.1| (AE000561) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 495
Score = 1003 bits (2593), Expect = 0.0
Identities = 495/495 (100%), Positives = 495/495 (100%)
Query: 1 MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIA 60
MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIA
Sbjct: 1 MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIA 60
Query: 61 VFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEKAVLKNYEDFFKQIPYITKGEKEE 120
VFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEKAVLKNYEDFFKQIPYITKGEKEE
Sbjct: 61 VFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEKAVLKNYEDFFKQIPYITKGEKEE 120
Query: 121 LEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRLLEMISQPESGVMNFLSVVH 180
LEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRLLEMISQPESGVMNFLSVVH
Sbjct: 121 LEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRLLEMISQPESGVMNFLSVVH 180
Query: 181 YLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYPSNSPKTPNPPKTCALFNA 240
YLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYPSNSPKTPNPPKTCALFNA
Sbjct: 181 YLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYPSNSPKTPNPPKTCALFNA 240
Query: 241 YAKHLDVQSLLKSAKLYLEKMGQKIIDLPFCYDGGYYGKIISTHDFLTASAYNLALAKAN 300
YAKHLDVQSLLKSAKLYLEKMGQKIIDLPFCYDGGYYGKIISTHDFLTASAYNLALAKAN
Sbjct: 241 YAKHLDVQSLLKSAKLYLEKMGQKIIDLPFCYDGGYYGKIISTHDFLTASAYNLALAKAN 300
Query: 301 GVSLIFCEEDAYLNILHAKEVLDNNPEIINSVNEKLKKYQLVYEKGVEVVYLNEWVNEFL 360
GVSLIFCEEDAYLNILHAKEVLDNNPEIINSVNEKLKKYQLVYEKGVEVVYLNEWVNEFL
Sbjct: 301 GVSLIFCEEDAYLNILHAKEVLDNNPEIINSVNEKLKKYQLVYEKGVEVVYLNEWVNEFL 360
Query: 361 AWELKSPFDAFLGAEFSRIKRSDHFFNKIHLKAPHFLESFQNYAPLLEVNEVSGLLQCAH 420
AWELKSPFDAFLGAEFSRIKRSDHFFNKIHLKAPHFLESFQNYAPLLEVNEVSGLLQCAH
Sbjct: 361 AWELKSPFDAFLGAEFSRIKRSDHFFNKIHLKAPHFLESFQNYAPLLEVNEVSGLLQCAH 420
Query: 421 LRYLGIDLGADFLIVHSLGLFHAFENLSLKASKVYKRDNDNTPTLFLPQIALMAMGEKNT 480
LRYLGIDLGADFLIVHSLGLFHAFENLSLKASKVYKRDNDNTPTLFLPQIALMAMGEKNT
Sbjct: 421 LRYLGIDLGADFLIVHSLGLFHAFENLSLKASKVYKRDNDNTPTLFLPQIALMAMGEKNT 480
Query: 481 QALGLDAHYHKVTFI 495
QALGLDAHYHKVTFI
Sbjct: 481 QALGLDAHYHKVTFI 495
>ref|NP_223138.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71933 hypothetical protein jhp0420 - Helicobacter pylori (strain J99)
gb|AAD06001.1| (AE001476) putative [Helicobacter pylori J99]
Length = 495
Score = 971 bits (2511), Expect = 0.0
Identities = 475/495 (95%), Positives = 485/495 (97%)
Query: 1 MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIA 60
MSVLKLHVK FRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIA
Sbjct: 1 MSVLKLHVKAFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIA 60
Query: 61 VFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEKAVLKNYEDFFKQIPYITKGEKEE 120
VFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEK VLKNYEDFFKQ+PYITKGEKEE
Sbjct: 61 VFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEKEVLKNYEDFFKQVPYITKGEKEE 120
Query: 121 LEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRLLEMISQPESGVMNFLSVVH 180
LEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRLLEMIS+PESGVMNFLSV H
Sbjct: 121 LEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRLLEMISKPESGVMNFLSVAH 180
Query: 181 YLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYPSNSPKTPNPPKTCALFNA 240
YLYKNDDNIDHEIYELQE+LTNSKIKPWKDFSKNLLSLFQY SN PKTPNPPKTCALFNA
Sbjct: 181 YLYKNDDNIDHEIYELQEMLTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNA 240
Query: 241 YAKHLDVQSLLKSAKLYLEKMGQKIIDLPFCYDGGYYGKIISTHDFLTASAYNLALAKAN 300
YAKHL+ Q+LLKSAKLYLE+MGQK+IDLPFCYDGGYYGKIISTHDFLTA AYNLALAKAN
Sbjct: 241 YAKHLNAQALLKSAKLYLERMGQKVIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKAN 300
Query: 301 GVSLIFCEEDAYLNILHAKEVLDNNPEIINSVNEKLKKYQLVYEKGVEVVYLNEWVNEFL 360
GVSLIFCEED+YLNILHAKEVLDNNPEII+SVNEKLKKYQLVYEKGVEVVYLNEWVNEFL
Sbjct: 301 GVSLIFCEEDSYLNILHAKEVLDNNPEIIDSVNEKLKKYQLVYEKGVEVVYLNEWVNEFL 360
Query: 361 AWELKSPFDAFLGAEFSRIKRSDHFFNKIHLKAPHFLESFQNYAPLLEVNEVSGLLQCAH 420
AWELKSPFDAFLGAEFSRIK SDHFFNKIHLKAPHFLESFQNYAPLLEVNEVSGLLQCAH
Sbjct: 361 AWELKSPFDAFLGAEFSRIKPSDHFFNKIHLKAPHFLESFQNYAPLLEVNEVSGLLQCAH 420
Query: 421 LRYLGIDLGADFLIVHSLGLFHAFENLSLKASKVYKRDNDNTPTLFLPQIALMAMGEKNT 480
LRYLGIDLGADFLIVHSLGLFHAFENLSLKASK+YKRDNDNTPTLFLPQIALMAMGEKN
Sbjct: 421 LRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALMAMGEKNK 480
Query: 481 QALGLDAHYHKVTFI 495
Q LGLDAHYHKVTFI
Sbjct: 481 QTLGLDAHYHKVTFI 495
>ref|NP_282599.1| (NC_002163) hypothetical protein Cj1459 [Campylobacter jejuni]
pir||B81292 hypothetical protein Cj1459 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73882.1| (AL139078) hypothetical protein Cj1459 [Campylobacter jejuni]
Length = 357
Score = 76.3 bits (186), Expect = 8e-13
Identities = 56/239 (23%), Positives = 110/239 (45%), Gaps = 46/239 (19%)
Query: 5 KLHVKVFRFETNKDYNPAYESYFLE-YQEDQYLLDLLKQLKG------VSYNENIALKIN 57
KL +++FRF+ KDY Y+ Y + Y+ DLL Q++ +E+ + +N
Sbjct: 3 KLELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQNDDIYFDFDKDEDTYIVVN 62
Query: 58 QIAVFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEKAVLKNYEDFFKQIPYITK-G 116
+ + + + F ++PLS + A+KDL+ID+ DF + Y+ K G
Sbjct: 63 KQIIPLFTPLEKIAKEFDFNLCIEPLSTKRAIKDLIIDKN-------DFLDKYKYLEKFG 115
Query: 117 EKEELEKFIQINFINPQTN-----PKYLGDGFFLYVKWLMKRYPTERNRLLEMISQPESG 171
++E+ + + + +++ T P+Y+GDG F ++++YP ++ +L+ ++ E G
Sbjct: 116 DEEDKKLYAKYDYLYYATEILDYLPEYMGDGVFYLASKMIEKYPEKKIEILKTLADKEKG 175
Query: 172 VMNFL--------------------------SVVHYLYKNDDNIDHEIYELQEILTNSK 204
+ L +++H+ + D+EI EL+EI N K
Sbjct: 176 IFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNAFDNEIKELKEIKHNFK 234
>ref|NP_613857.1| (NC_003551) Heterodisulfide reductase, subunit B [Methanopyrus
kandleri AV19]
gb|AAM01787.1| (AE010351) Heterodisulfide reductase, subunit B [Methanopyrus
kandleri AV19]
Length = 305
Score = 49.3 bits (116), Expect = 1e-04
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 252 KSAKLYLEKMGQKIIDLP---FCYDGGYYGKIISTHDFLTASAYNLALAKANGVSLIFCE 308
K+ +L E++G +++D+ C G +G ++T +A NL++A+ G ++
Sbjct: 22 KATRLVFEELGYELVDMDGASCCPAPGVFGSF-DLKTWVTIAARNLSIAEEKGYDILTVC 80
Query: 309 EDAYLNILHAKEVLDNNPEIINSVNEKLKKYQLVYEKGVEVVYLNEWVNE 358
+ ++ A +L NPE+ VNEKL + Y+ V+V ++N ++ E
Sbjct: 81 NGCFGSLNEANHLLQENPELREFVNEKLAEIDREYKGKVKVYHVNTFLYE 130
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.139 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,955,489
Number of Sequences: 1026957
Number of extensions: 14637949
Number of successful extensions: 36883
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 36876
Number of HSP's gapped (non-prelim): 5
length of query: 495
length of database: 324,149,939
effective HSP length: 125
effective length of query: 370
effective length of database: 195,780,314
effective search space: 72438716180
effective search space used: 72438716180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 99 (42.7 bits)