BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645097|ref|NP_207267.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (162 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207267.1|  (NC_000915) conserved hypothetical protein...   323  6e-88
ref|NP_223139.1|  (NC_000921) putative [Helicobacter pylori ...   304  3e-82
ref|NP_282248.1|  (NC_002163) hypothteical protein Cj1100 [C...    86  2e-16

>ref|NP_207267.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
           26695]
 pir||E64578 conserved hypothetical protein HP0469 - Helicobacter pylori
           (strain 26695)
 gb|AAD07531.1| (AE000561) conserved hypothetical protein [Helicobacter pylori
           26695]
          Length = 162

 Score =  323 bits (827), Expect = 6e-88
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MQRELRLLNNKHCMEYLQFLSKNHLSFNLLCERDAIDFSPKLPKEIHEKFGALVLFVLAG 60
           MQRELRLLNNKHCMEYLQFLSKNHLSFNLLCERDAIDFSPKLPKEIHEKFGALVLFVLAG
Sbjct: 1   MQRELRLLNNKHCMEYLQFLSKNHLSFNLLCERDAIDFSPKLPKEIHEKFGALVLFVLAG 60

Query: 61  YTLESLIIDTKSVQFEAGFGPNNIGSVVQVKLPGIIQILIKEKNENAVLFNRCDSLELFQ 120
           YTLESLIIDTKSVQFEAGFGPNNIGSVVQVKLPGIIQILIKEKNENAVLFNRCDSLELFQ
Sbjct: 61  YTLESLIIDTKSVQFEAGFGPNNIGSVVQVKLPGIIQILIKEKNENAVLFNRCDSLELFQ 120

Query: 121 KEDSIAQEPKKDERESKEWLDSKEALFSNSKNRAILENLHKS 162
           KEDSIAQEPKKDERESKEWLDSKEALFSNSKNRAILENLHKS
Sbjct: 121 KEDSIAQEPKKDERESKEWLDSKEALFSNSKNRAILENLHKS 162



>ref|NP_223139.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71934 hypothetical protein jhp0421 - Helicobacter pylori (strain J99)
 gb|AAD06002.1| (AE001476) putative [Helicobacter pylori J99]
          Length = 162

 Score =  304 bits (778), Expect = 3e-82
 Identities = 151/162 (93%), Positives = 157/162 (96%)

Query: 1   MQRELRLLNNKHCMEYLQFLSKNHLSFNLLCERDAIDFSPKLPKEIHEKFGALVLFVLAG 60
           MQRELRLLNNKHC+EYLQFLSKNHLSFNLLCERDAIDFSPKLPKEIHEKFG+LVLF+LAG
Sbjct: 1   MQRELRLLNNKHCIEYLQFLSKNHLSFNLLCERDAIDFSPKLPKEIHEKFGSLVLFILAG 60

Query: 61  YTLESLIIDTKSVQFEAGFGPNNIGSVVQVKLPGIIQILIKEKNENAVLFNRCDSLELFQ 120
           YTLESL+ID +SVQFEAGFGPNNIGSVVQV L GIIQILIKEKNEN VLFNRCDSLELFQ
Sbjct: 61  YTLESLMIDAQSVQFEAGFGPNNIGSVVQVGLSGIIQILIKEKNENIVLFNRCDSLELFQ 120

Query: 121 KEDSIAQEPKKDERESKEWLDSKEALFSNSKNRAILENLHKS 162
           KE+ IAQEPKKDERESKEWLDSKEALFSNSKNRAILENLHKS
Sbjct: 121 KEEPIAQEPKKDERESKEWLDSKEALFSNSKNRAILENLHKS 162



>ref|NP_282248.1| (NC_002163) hypothteical protein Cj1100 [Campylobacter jejuni]
 pir||G81313 hypothetical protein Cj1100 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73355.1| (AL139077) hypothteical protein Cj1100 [Campylobacter jejuni]
          Length = 145

 Score = 85.5 bits (210), Expect = 2e-16
 Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 19/147 (12%)

Query: 11  KHCMEYLQFLSKNHLSFNLLCERDAIDFSPKLPKEIHEKFGALVLFVLAGYTLESLIIDT 70
           KHC E +  L + ++ F+++   + IDF+P+LPKE+  K     LF L GYT ES+ ++ 
Sbjct: 17  KHCYEVISHLIEENIEFSIVANTNFIDFNPELPKELDIKQNPYALFALGGYTFESIQLNK 76

Query: 71  KSVQFEAGFGPNNIGSVVQVKLPGIIQILIKEKNENAVLFNRCDSLELFQKEDSIAQEPK 130
             +QF AGFG ++  S V+V L  I QI +    EN++LF    +  L+++ED       
Sbjct: 77  DFIQFHAGFGNDDFDSFVKVDLGAITQIQV----ENSILF---VNFSLYKRED------- 122

Query: 131 KDERESKEWLDSKEALFSNSKNRAILE 157
                SK    SK    +N KN+ I +
Sbjct: 123 -----SKNLQKSKNIFLNNPKNKDIFK 144



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.318    0.136    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,010,417
Number of Sequences: 1026957
Number of extensions: 3735759
Number of successful extensions: 10623
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10620
Number of HSP's gapped (non-prelim): 3
length of query: 162
length of database: 324,149,939
effective HSP length: 111
effective length of query: 51
effective length of database: 210,157,712
effective search space: 10718043312
effective search space used: 10718043312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 92 (40.0 bits)