BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645107|ref|NP_207277.1| hypothetical protein
[Helicobacter pylori 26695]
         (282 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207277.1|  (NC_000915) hypothetical protein [Helicoba...   568  e-161
ref|NP_223149.1|  (NC_000921) putative [Helicobacter pylori ...   526  e-149
ref|NP_207077.1|  (NC_000915) lipopolysaccharide heptosyltra...    54  2e-06
gb|AAB65778.1|  (AF001502) heptosyltransferase I [Helicobact...    47  2e-04
ref|NP_222985.1|  (NC_000921) LIPOPOLYSACCHARIDE HEPTOSYLTRA...    47  2e-04

>ref|NP_207277.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64579 hypothetical protein HP0479 - Helicobacter pylori (strain 26695)
 gb|AAD07549.1| (AE000562) H. pylori predicted coding region HP0479 [Helicobacter
           pylori 26695]
          Length = 282

 Score =  568 bits (1464), Expect = e-161
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MHVACLLALGDNLITLSLLKEIAFKQQQPLKILGTRLTLKIAKLLECEKHFEIIPLFENV 60
           MHVACLLALGDNLITLSLLKEIAFKQQQPLKILGTRLTLKIAKLLECEKHFEIIPLFENV
Sbjct: 1   MHVACLLALGDNLITLSLLKEIAFKQQQPLKILGTRLTLKIAKLLECEKHFEIIPLFENV 60

Query: 61  PAFYDLKKQGVFLAMKDFLWLLKAIKKHQIKRLILEKQDFRSTFLAKFIPITTPNKEIKN 120
           PAFYDLKKQGVFLAMKDFLWLLKAIKKHQIKRLILEKQDFRSTFLAKFIPITTPNKEIKN
Sbjct: 61  PAFYDLKKQGVFLAMKDFLWLLKAIKKHQIKRLILEKQDFRSTFLAKFIPITTPNKEIKN 120

Query: 121 VYQNRQELFSQIYGHVFDNPPYPMNLKNPKKILINPFTRSIDRSIPLEHLQIVLKLLKPF 180
           VYQNRQELFSQIYGHVFDNPPYPMNLKNPKKILINPFTRSIDRSIPLEHLQIVLKLLKPF
Sbjct: 121 VYQNRQELFSQIYGHVFDNPPYPMNLKNPKKILINPFTRSIDRSIPLEHLQIVLKLLKPF 180

Query: 181 CVTLLDFEERYAFLKDRVAHYRAKTSLEEVKNLILESDLYIGGDSFLIHLAYYLKKNYFI 240
           CVTLLDFEERYAFLKDRVAHYRAKTSLEEVKNLILESDLYIGGDSFLIHLAYYLKKNYFI
Sbjct: 181 CVTLLDFEERYAFLKDRVAHYRAKTSLEEVKNLILESDLYIGGDSFLIHLAYYLKKNYFI 240

Query: 241 FFYRDNDDFMPPNSKNKNFLKAHKSHSIEQDLAKKFRHLGLL 282
           FFYRDNDDFMPPNSKNKNFLKAHKSHSIEQDLAKKFRHLGLL
Sbjct: 241 FFYRDNDDFMPPNSKNKNFLKAHKSHSIEQDLAKKFRHLGLL 282



>ref|NP_223149.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71932 hypothetical protein jhp0431 - Helicobacter pylori (strain J99)
 gb|AAD06012.1| (AE001477) putative [Helicobacter pylori J99]
          Length = 282

 Score =  526 bits (1356), Expect = e-149
 Identities = 261/282 (92%), Positives = 270/282 (95%)

Query: 1   MHVACLLALGDNLITLSLLKEIAFKQQQPLKILGTRLTLKIAKLLECEKHFEIIPLFENV 60
           MHVACLLALGDNLITLSLLKEIA KQQQ LKILGT LTLKIAKLLECEKHFEIIP+FEN+
Sbjct: 1   MHVACLLALGDNLITLSLLKEIASKQQQSLKILGTHLTLKIAKLLECEKHFEIIPVFENI 60

Query: 61  PAFYDLKKQGVFLAMKDFLWLLKAIKKHQIKRLILEKQDFRSTFLAKFIPITTPNKEIKN 120
           PAFYDLKKQGVF AMKDFLWLLKAIKKHQIKRLILEKQDFRS  L++F+ ITTPNKEIKN
Sbjct: 61  PAFYDLKKQGVFWAMKDFLWLLKAIKKHQIKRLILEKQDFRSFLLSQFVSITTPNKEIKN 120

Query: 121 VYQNRQELFSQIYGHVFDNPPYPMNLKNPKKILINPFTRSIDRSIPLEHLQIVLKLLKPF 180
           VYQNRQELFSQIYGHVFDNPPYPM+LKNPKKILINPFTR  DR+I LEHL+IVLKLLKPF
Sbjct: 121 VYQNRQELFSQIYGHVFDNPPYPMSLKNPKKILINPFTRENDRNISLEHLKIVLKLLKPF 180

Query: 181 CVTLLDFEERYAFLKDRVAHYRAKTSLEEVKNLILESDLYIGGDSFLIHLAYYLKKNYFI 240
           CVTLLDFEERYAFLKDRVAHYRAKTSLEEVKNLILESDLYIGGDSFLIHLAYYLKKNYFI
Sbjct: 181 CVTLLDFEERYAFLKDRVAHYRAKTSLEEVKNLILESDLYIGGDSFLIHLAYYLKKNYFI 240

Query: 241 FFYRDNDDFMPPNSKNKNFLKAHKSHSIEQDLAKKFRHLGLL 282
           FFYRDNDDFMPPNS N+NFLKAHKSH IEQDLAKKFRHLGLL
Sbjct: 241 FFYRDNDDFMPPNSGNENFLKAHKSHFIEQDLAKKFRHLGLL 282



>ref|NP_207077.1| (NC_000915) lipopolysaccharide heptosyltransferase-1 (rfaC)
           [Helicobacter pylori 26695]
 pir||G64554 lipopolysaccharide heptosyltransferase (EC 2.4.99.-) I HP0279
           [similarity] - Helicobacter pylori (strain 26695)
 gb|AAD07342.1| (AE000546) lipopolysaccharide heptosyltransferase-1 (rfaC)
           [Helicobacter pylori 26695]
          Length = 340

 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 47/148 (31%), Positives = 72/148 (47%), Gaps = 12/148 (8%)

Query: 97  KQDFRSTFLAKFIPITTPNKEIKNVYQNRQELFSQIYGHVFDNPPYPMNL-KNPKKILIN 155
           K++F     A  +P    +KEI     +R + FS       D     +NL KN  KIL  
Sbjct: 138 KRNFTLLSHALNLPQKEISKEISESLSSRAKAFSYQPSPKID----ALNLNKNKPKILFI 193

Query: 156 PFTRSIDRSIPLEHLQIVLKLLKPFCVTLLDFEERY--AFLKDRVAHYR-----AKTSLE 208
             T  I+++ P+E  + +  +L+ F + LL   + Y    L   + H R      K +L 
Sbjct: 194 LETSKINKTYPIERFKELALILENFQICLLWHADEYKATTLYHALKHQRDVLLLPKLTLN 253

Query: 209 EVKNLILESDLYIGGDSFLIHLAYYLKK 236
           EVK L+ + DL IGGD+ + HLA+ L+K
Sbjct: 254 EVKALLFKMDLIIGGDTGITHLAWALQK 281



>gb|AAB65778.1| (AF001502) heptosyltransferase I [Helicobacter pylori]
          Length = 336

 Score = 47.4 bits (111), Expect = 2e-04
 Identities = 41/134 (30%), Positives = 65/134 (47%), Gaps = 12/134 (8%)

Query: 111 ITTPNKEIKNVYQNRQELFSQIYGHVFDNPPYPMNL-KNPKKILINPFTRSIDRSIPLEH 169
           +  P KEI     +R ++FS       D     +NL +N  KIL    T  I+++ P E 
Sbjct: 148 LNLPKKEISESLSSRFKVFSYQDSPKID----ALNLNQNKPKILFVLETSKINKTYPTER 203

Query: 170 LQIVLKLLKPFCVTLLDF--EERYAFLKDRVAHY-----RAKTSLEEVKNLILESDLYIG 222
            + +   L+ F + LL    E++   L   + H        K +L EVK L+ + D+ IG
Sbjct: 204 FKELALALENFQICLLWHADEKKATMLYHALKHQCDALLLPKLTLNEVKALLFKMDVIIG 263

Query: 223 GDSFLIHLAYYLKK 236
           GD+ + HLA+ L+K
Sbjct: 264 GDTGITHLAWALQK 277



>ref|NP_222985.1| (NC_000921) LIPOPOLYSACCHARIDE HEPTOSYLTRANSFERASE-1 [Helicobacter
           pylori J99]
 pir||G71954 lipopolysaccharide heptosyltransferase (EC 2.4.99.-) I waaC
           [similarity] - Helicobacter pylori (strain J99)
 gb|AAD05843.1| (AE001463) LIPOPOLYSACCHARIDE HEPTOSYLTRANSFERASE-1 [Helicobacter
           pylori J99]
          Length = 336

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 22/147 (14%)

Query: 102 STFLAKFIPITTPNKEIKNVYQNRQELFSQIYGHVFDNPPYP----MNLK-NPKKILINP 156
           ST L++ + +  P KEI     +R + FS          P P    +NL  N  KIL   
Sbjct: 141 STLLSQALNL--PEKEISQGLSSRAKAFSY--------QPSPKINALNLNGNKPKILFVL 190

Query: 157 FTRSIDRSIPLEHLQIVLKLLKPFCVTLL-DFEERYAFLKDRVAHYRA------KTSLEE 209
            T  I+++ P E  + +  +L+ F + LL    E+ A        Y+       K +L E
Sbjct: 191 ETSKINKTYPTERFKELALMLENFQICLLWHANEKKAITLYHALKYQRDVLLLPKLTLNE 250

Query: 210 VKNLILESDLYIGGDSFLIHLAYYLKK 236
           VK L+ + D+ IGGD+ + HLA+ L+K
Sbjct: 251 VKALLFKMDVIIGGDTGITHLAWALQK 277



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.326    0.143    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,714,959
Number of Sequences: 1026957
Number of extensions: 7796018
Number of successful extensions: 21724
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21719
Number of HSP's gapped (non-prelim): 5
length of query: 282
length of database: 324,149,939
effective HSP length: 120
effective length of query: 162
effective length of database: 200,915,099
effective search space: 32548246038
effective search space used: 32548246038
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 96 (41.6 bits)