BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645110|ref|NP_207280.1| hypothetical protein
[Helicobacter pylori 26695]
         (170 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207280.1|  (NC_000915) hypothetical protein [Helicoba...   348  2e-95
ref|NP_223152.1|  (NC_000921) putative [Helicobacter pylori ...   328  2e-89

>ref|NP_207280.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64580 hypothetical protein HP0482 - Helicobacter pylori (strain 26695)
 gb|AAD07552.1| (AE000563) H. pylori predicted coding region HP0482 [Helicobacter
           pylori 26695]
          Length = 170

 Score =  348 bits (892), Expect = 2e-95
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MHISEVKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQPLSQNILTQNVARVYLIVVNGE 60
           MHISEVKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQPLSQNILTQNVARVYLIVVNGE
Sbjct: 1   MHISEVKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQPLSQNILTQNVARVYLIVVNGE 60

Query: 61  IKKIGGSQADGGIKSTLNIYKDGGVKGRPNIRSFGVWYFLYHTILTGAKIEFYMIYQPNF 120
           IKKIGGSQADGGIKSTLNIYKDGGVKGRPNIRSFGVWYFLYHTILTGAKIEFYMIYQPNF
Sbjct: 61  IKKIGGSQADGGIKSTLNIYKDGGVKGRPNIRSFGVWYFLYHTILTGAKIEFYMIYQPNF 120

Query: 121 ETQVKGLFGFCAIKDASISYKLLEQACLTDYRNNSNDALPEWNVQEQGKD 170
           ETQVKGLFGFCAIKDASISYKLLEQACLTDYRNNSNDALPEWNVQEQGKD
Sbjct: 121 ETQVKGLFGFCAIKDASISYKLLEQACLTDYRNNSNDALPEWNVQEQGKD 170



>ref|NP_223152.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71933 hypothetical protein jhp0434 - Helicobacter pylori (strain J99)
 gb|AAD06006.1| (AE001477) putative [Helicobacter pylori J99]
          Length = 175

 Score =  328 bits (840), Expect = 2e-89
 Identities = 160/170 (94%), Positives = 165/170 (96%)

Query: 1   MHISEVKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQPLSQNILTQNVARVYLIVVNGE 60
           MHIS VKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQ LSQNILTQNVAR YLIVV+GE
Sbjct: 1   MHISGVKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQSLSQNILTQNVARAYLIVVDGE 60

Query: 61  IKKIGGSQADGGIKSTLNIYKDGGVKGRPNIRSFGVWYFLYHTILTGAKIEFYMIYQPNF 120
           IKKIGGSQADGGIKSTLNIYKDGGVKGR +IRSFGVWYFLYHTILTGAKIEFYMIYQPNF
Sbjct: 61  IKKIGGSQADGGIKSTLNIYKDGGVKGRSSIRSFGVWYFLYHTILTGAKIEFYMIYQPNF 120

Query: 121 ETQVKGLFGFCAIKDASISYKLLEQACLTDYRNNSNDALPEWNVQEQGKD 170
           ETQVKGLFGFCAIKDASISYKLLEQACLTDYRNN+NDALPEWN +EQGK+
Sbjct: 121 ETQVKGLFGFCAIKDASISYKLLEQACLTDYRNNNNDALPEWNAREQGKE 170



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.318    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,096,535
Number of Sequences: 1026957
Number of extensions: 4536482
Number of successful extensions: 9401
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9398
Number of HSP's gapped (non-prelim): 2
length of query: 170
length of database: 324,149,939
effective HSP length: 112
effective length of query: 58
effective length of database: 209,130,755
effective search space: 12129583790
effective search space used: 12129583790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 93 (40.4 bits)