BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645111|ref|NP_207281.1| hypothetical protein
[Helicobacter pylori 26695]
(250 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207281.1| (NC_000915) hypothetical protein [Helicoba... 512 e-144
ref|NP_223154.1| (NC_000921) putative [Helicobacter pylori ... 349 2e-95
>ref|NP_207281.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64580 hypothetical protein HP0484 - Helicobacter pylori (strain 26695)
gb|AAD07553.1| (AE000563) H. pylori predicted coding region HP0484 [Helicobacter
pylori 26695]
Length = 250
Score = 512 bits (1319), Expect = e-144
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MFNNNDFKDYRKLLGFGSQNAFKEFLGAKDIQPCVDFNDLNALKKRLIEIFSAINSIYCF 60
MFNNNDFKDYRKLLGFGSQNAFKEFLGAKDIQPCVDFNDLNALKKRLIEIFSAINSIYCF
Sbjct: 1 MFNNNDFKDYRKLLGFGSQNAFKEFLGAKDIQPCVDFNDLNALKKRLIEIFSAINSIYCF 60
Query: 61 KYNEYELECFFKNSIERVFSKIVDTHIIYKLNNQGRRPEEVCFSWMRGFLVAEFFKDFIA 120
KYNEYELECFFKNSIERVFSKIVDTHIIYKLNNQGRRPEEVCFSWMRGFLVAEFFKDFIA
Sbjct: 61 KYNEYELECFFKNSIERVFSKIVDTHIIYKLNNQGRRPEEVCFSWMRGFLVAEFFKDFIA 120
Query: 121 CLFSAQKETIKFFGGDNFENIESFKRSPKADFLLDNHLLLEVQSDFQGINDIKEHKVLEA 180
CLFSAQKETIKFFGGDNFENIESFKRSPKADFLLDNHLLLEVQSDFQGINDIKEHKVLEA
Sbjct: 121 CLFSAQKETIKFFGGDNFENIESFKRSPKADFLLDNHLLLEVQSDFQGINDIKEHKVLEA 180
Query: 181 KRRLITDKVPTIVVHFDLFNGQVACVEISKIKDNDLNWITRQQMEGQSVFNISQNFFDYK 240
KRRLITDKVPTIVVHFDLFNGQVACVEISKIKDNDLNWITRQQMEGQSVFNISQNFFDYK
Sbjct: 181 KRRLITDKVPTIVVHFDLFNGQVACVEISKIKDNDLNWITRQQMEGQSVFNISQNFFDYK 240
Query: 241 ITEIPNKPLS 250
ITEIPNKPLS
Sbjct: 241 ITEIPNKPLS 250
>ref|NP_223154.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71933 hypothetical protein jhp0436 - Helicobacter pylori (strain J99)
gb|AAD06008.1| (AE001477) putative [Helicobacter pylori J99]
Length = 184
Score = 349 bits (895), Expect = 2e-95
Identities = 169/183 (92%), Positives = 178/183 (96%)
Query: 67 LECFFKNSIERVFSKIVDTHIIYKLNNQGRRPEEVCFSWMRGFLVAEFFKDFIACLFSAQ 126
+ECFFKNSIERVFSKI DTHII KLNNQGRR EEVCFSW+RGFLVAEFFKDFIACLF AQ
Sbjct: 1 MECFFKNSIERVFSKIADTHIIDKLNNQGRRVEEVCFSWVRGFLVAEFFKDFIACLFGAQ 60
Query: 127 KETIKFFGGDNFENIESFKRSPKADFLLDNHLLLEVQSDFQGINDIKEHKVLEAKRRLIT 186
KETIKFFGGDNFE+IESFKRSPKADFLLD+HLLLEVQS FQGINDIKEHKVLEA+RRLIT
Sbjct: 61 KETIKFFGGDNFESIESFKRSPKADFLLDDHLLLEVQSGFQGINDIKEHKVLEAQRRLIT 120
Query: 187 DKVPTIVVHFDLFNGQVACVEISKIKDNDLNWITRQQMEGQSVFNISQNFFDYKITEIPN 246
DK+PTIVVHFDLFNGQVACVEISKIK+NDLNWITRQQMEGQSVFNISQNFFD+KITE+PN
Sbjct: 121 DKIPTIVVHFDLFNGQVACVEISKIKENDLNWITRQQMEGQSVFNISQNFFDHKITEMPN 180
Query: 247 KPL 249
KPL
Sbjct: 181 KPL 183
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.142 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,870,209
Number of Sequences: 1026957
Number of extensions: 6469822
Number of successful extensions: 17281
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17279
Number of HSP's gapped (non-prelim): 2
length of query: 250
length of database: 324,149,939
effective HSP length: 118
effective length of query: 132
effective length of database: 202,969,013
effective search space: 26791909716
effective search space used: 26791909716
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 96 (41.6 bits)