BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644680|ref|NP_206850.1| hypothetical protein
[Helicobacter pylori 26695]
(330 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206850.1| (NC_000915) hypothetical protein [Helicoba... 681 0.0
ref|NP_222764.1| (NC_000921) putative [Helicobacter pylori ... 658 0.0
ref|NP_282101.1| (NC_002163) hypothetical protein Cj0949c [... 288 5e-77
ref|NP_642619.1| (NC_003919) conserved hypothetical protein... 244 1e-63
ref|NP_637554.1| (NC_003902) conserved hypothetical protein... 243 3e-63
ref|NP_299721.1| (NC_002488) conserved hypothetical protein... 241 6e-63
ref|NP_662393.1| (NC_002932) conserved hypothetical protein... 193 2e-48
ref|NP_345405.1| (NC_003028) conserved hypothetical protein... 176 4e-43
ref|NP_358416.1| (NC_003098) Conserved hypothetical protein... 174 1e-42
ref|NP_296080.1| (NC_001263) conserved hypothetical protein... 164 1e-39
ref|NP_267853.1| (NC_002662) conserved hypothetical protein... 163 2e-39
ref|NP_419030.1| (NC_002696) conserved hypothetical protein... 163 3e-39
ref|NP_463571.1| (NC_003210) conserved hypothetical protein... 162 6e-39
ref|NP_248983.1| (NC_002516) conserved hypothetical protein... 161 8e-39
gb|AAL98713.1|AF349639_3 (AF349639) LabD [Lactobacillus sakei] 154 2e-36
ref|NP_463573.1| (NC_003210) conserved hypothetical protein... 151 9e-36
ref|NP_404556.1| (NC_003143) conserved hypothetical protein... 144 2e-33
ref|NP_048994.1| (NC_000852) A638R [Paramecium bursaria Chl... 139 3e-32
ref|NP_196434.1| (NM_120900) putative protein [Arabidopsis ... 139 4e-32
dbj|BAB59127.1| (AB062682) hypothetical protein [Arabidopsi... 136 3e-31
gb|AAD47622.1| (AF153708) unknown [Pseudomonas sp. BG33R] 133 2e-30
gb|AAD19715.1| (AF124349) unknown [Zymomonas mobilis] 133 3e-30
ref|NP_629661.1| (NC_003888) conserved hypothetical protein... 114 2e-24
gb|AAC27303.1| (AF073774) unknown [Prevotella albensis] 103 3e-21
gb|AAD38981.1|AF153769_1 (AF153769) immunoreactive 62 kDa a... 52 9e-06
gb|AAF06719.1| (AF100668) peptidylarginine deiminase [Porph... 52 9e-06
gb|AAL67495.1|AF459410_1 (AF459410) senescence-associated p... 49 6e-05
>ref|NP_206850.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64526 hypothetical protein HP0049 - Helicobacter pylori (strain 26695)
gb|AAD07122.1| (AE000526) H. pylori predicted coding region HP0049 [Helicobacter
pylori 26695]
Length = 330
Score = 681 bits (1758), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MKRMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIG 60
MKRMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIG
Sbjct: 1 MKRMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIG 60
Query: 61 YETLKNLPGVEIARIDTNDTWARDFGAISVENHGVLECLDFGFNGWGLKYPSNLDNQVNF 120
YETLKNLPGVEIARIDTNDTWARDFGAISVENHGVLECLDFGFNGWGLKYPSNLDNQVNF
Sbjct: 61 YETLKNLPGVEIARIDTNDTWARDFGAISVENHGVLECLDFGFNGWGLKYPSNLDNQVNF 120
Query: 121 KLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENMLKKE 180
KLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENMLKKE
Sbjct: 121 KLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENMLKKE 180
Query: 181 LGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQEELKT 240
LGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQEELKT
Sbjct: 181 LGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQEELKT 240
Query: 241 FKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILETLK 300
FKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILETLK
Sbjct: 241 FKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILETLK 300
Query: 301 QHTPLEVIGVDCNTLIKQHGSLHCVTMQLY 330
QHTPLEVIGVDCNTLIKQHGSLHCVTMQLY
Sbjct: 301 QHTPLEVIGVDCNTLIKQHGSLHCVTMQLY 330
>ref|NP_222764.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71981 hypothetical protein jhp0042 - Helicobacter pylori (strain J99)
gb|AAD05619.1| (AE001443) putative [Helicobacter pylori J99]
Length = 330
Score = 658 bits (1697), Expect = 0.0
Identities = 315/330 (95%), Positives = 323/330 (97%)
Query: 1 MKRMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIG 60
MKRMLAEFEKIQAILMAFPHEF DWAYCI+EARESFL+IIQTIAKHAKVLVCVHTND IG
Sbjct: 1 MKRMLAEFEKIQAILMAFPHEFGDWAYCIEEARESFLHIIQTIAKHAKVLVCVHTNDTIG 60
Query: 61 YETLKNLPGVEIARIDTNDTWARDFGAISVENHGVLECLDFGFNGWGLKYPSNLDNQVNF 120
YETLKNLPGVEIARIDTNDTWARDFGAISVENHGVLECLDFGFNGWGLKYPSNLDNQVNF
Sbjct: 61 YETLKNLPGVEIARIDTNDTWARDFGAISVENHGVLECLDFGFNGWGLKYPSNLDNQVNF 120
Query: 121 KLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENMLKKE 180
KLK LGFLKHPLKTMPYILEGGSIESDGAGS+LTNTQCLLEKNRNPHLNQNGIE MLKKE
Sbjct: 121 KLKHLGFLKHPLKTMPYILEGGSIESDGAGSILTNTQCLLEKNRNPHLNQNGIETMLKKE 180
Query: 181 LGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQEELKT 240
LGAKQVLWYSYGYLKGDDTDSHTDTLARFL+KDTIVYS CEDENDEHYTALKKMQEELKT
Sbjct: 181 LGAKQVLWYSYGYLKGDDTDSHTDTLARFLNKDTIVYSACEDENDEHYTALKKMQEELKT 240
Query: 241 FKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILETLK 300
FKKLDGTPYKLIPLEIPKA+++ENQQRLPATYVNFLLCNNALIVPTYNDP D LILETL+
Sbjct: 241 FKKLDGTPYKLIPLEIPKAVYNENQQRLPATYVNFLLCNNALIVPTYNDPNDTLILETLR 300
Query: 301 QHTPLEVIGVDCNTLIKQHGSLHCVTMQLY 330
QHTPLEVIGVDCNTLIKQHGSLHCVTMQLY
Sbjct: 301 QHTPLEVIGVDCNTLIKQHGSLHCVTMQLY 330
>ref|NP_282101.1| (NC_002163) hypothetical protein Cj0949c [Campylobacter jejuni]
pir||D81369 hypothetical protein Cj0949c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73206.1| (AL139076) hypothetical protein Cj0949c [Campylobacter jejuni]
Length = 325
Score = 288 bits (738), Expect = 5e-77
Identities = 148/325 (45%), Positives = 210/325 (64%), Gaps = 11/325 (3%)
Query: 1 MKRMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIG 60
M + + E+ + + ++++ PHE SDW ++E +S+ ++ +++ KVL+
Sbjct: 1 MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKVVSEFQKVLLIAPKQS--D 58
Query: 61 YETLKNLPGVEIARIDTNDTWARDFGAISVENHGVLECLDFGFNGWGLKYPSNLDNQVNF 120
+E K++ VE + DTNDTW RDFGAI + +G L+ LDF FN WG K+ S LDN VN
Sbjct: 59 FENFKDIKNVEFFKCDTNDTWIRDFGAIDIVENGRLKALDFTFNAWGNKFQSELDNAVNS 118
Query: 121 KLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENMLKKE 180
KL F K LK + +ILEGGSI+ +G G +LT++ CLL +NRN HLN+ I+ LK+
Sbjct: 119 KLFKEKF-KEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNENRNSHLNKTQIDTKLKEI 177
Query: 181 LGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQEELKT 240
G KQ++W G++KGDDTD H DTLARF+DK+TI + CEDE DEHY L+KM+EELK
Sbjct: 178 FGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICEDEEDEHYLPLQKMKEELKK 237
Query: 241 FKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILETLK 300
T + L+ L IPK ++ E ++RL ATY NF+ NNALIVP Y D D +I + L
Sbjct: 238 ------TGFDLLELPIPKPLYYE-ERRLGATYANFVFINNALIVPFYKDKNDEIIAKRLS 290
Query: 301 QHTP-LEVIGVDCNTLIKQHGSLHC 324
+ P ++IGVD ++Q+GSLHC
Sbjct: 291 KALPNHKIIGVDARVFLRQNGSLHC 315
>ref|NP_642619.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37155.1| (AE011867) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 344
Score = 244 bits (622), Expect = 1e-63
Identities = 134/339 (39%), Positives = 199/339 (58%), Gaps = 19/339 (5%)
Query: 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYE 62
R AE+E A+L+A+PH +DWA + + E+++ ++ I++ V++CV +D+ Y
Sbjct: 6 RFPAEWEPQSAVLVAWPHAGTDWAERLADVEETYIALVTAISRFEPVVICVADDDLQIYA 65
Query: 63 TLKNLPGVEIARIDT----------NDTWARDFGAISVENHGVLECLDFGFNGWGLKYPS 112
+ + AR+D NDTW RD G I++ +DF F GWG K+ +
Sbjct: 66 EAR----LRSARVDMTRVRFVIAAYNDTWLRDSGPITLRQEAGFRLMDFRFTGWGGKFEA 121
Query: 113 NLDNQVNFKLKSLG-FLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQN 171
+LD+Q+ L + F+ ++T+ + LEGG+IE+DGAG++LT +CL E R+P +
Sbjct: 122 SLDDQLVSSLDAAQVFVPAQVETVDFALEGGAIETDGAGTLLTTWKCLHE--RHPQRTRE 179
Query: 172 GIENMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTAL 231
+ + L L ++VLW +GYL+GDDTD+H DTLARF D IVY C+ +D HY L
Sbjct: 180 SLSSDLATWLAQERVLWLDHGYLEGDDTDAHIDTLARFAGPDAIVYQGCDVASDSHYVEL 239
Query: 232 KKMQEELKTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPK 291
+ M EL +K DG PY+L L + I DE +RL A+Y NFL+ N A+++P Y D
Sbjct: 240 QAMGAELAALRKADGQPYRLFVLPWAQPILDEG-RRLAASYANFLIVNGAVLMPAYGDAA 298
Query: 292 DALILETLKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQL 329
DA L Q P E++ V C LI Q+GSLHC+TMQL
Sbjct: 299 DATAQAVLAQAFPHHEIVPVPCRALIWQNGSLHCLTMQL 337
>ref|NP_637554.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM41478.1| (AE012327) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 347
Score = 243 bits (619), Expect = 3e-63
Identities = 134/338 (39%), Positives = 203/338 (59%), Gaps = 17/338 (5%)
Query: 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGY- 61
R AE+E AIL+A+PH +DWA + E ++++ ++ I + V++CV +D+ Y
Sbjct: 9 RFPAEWESQSAILIAWPHAGTDWAERLAEVEDTYIALVTAITRFQPVIICVADDDLQIYA 68
Query: 62 ETLKNLPGVEIARIDT-----NDTWARDFGAISVENHGVLECLDFGFNGWGLKYPSNLDN 116
E VE+A++ NDTW RD G I++ + +DF F GWG K+ ++LD+
Sbjct: 69 EARLRSARVEMAQVRFVVAAYNDTWLRDSGPITLRHGDGFRLMDFRFTGWGGKFEASLDD 128
Query: 117 QVNFKLKSLG-FLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIEN 175
Q+ L + F+ ++T+ + LEGG+IE+DGAG++LT +CL E R+P +++ + +
Sbjct: 129 QLVSSLDAASVFVPADVQTVDFALEGGAIETDGAGTLLTTWKCLHE--RHPQRSRDSLSS 186
Query: 176 MLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQ 235
L L +VLW +GYL+GDDTD+H DTLARF D IVY C +D HY L+ M
Sbjct: 187 DLATWLAQDRVLWLDHGYLEGDDTDAHIDTLARFAGADAIVYQGCAVPSDSHYAELQAMG 246
Query: 236 EELKTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKD--- 292
EEL +K DG PY+L L + I D+ +RL A+Y NFL+ N A+++P Y D D
Sbjct: 247 EELAALRKADGQPYRLFVLPWAEPILDQG-RRLAASYANFLIVNGAVLMPAYGDAADAAA 305
Query: 293 -ALILETLKQHTPLEVIGVDCNTLIKQHGSLHCVTMQL 329
A++ + QH +++ V C LI Q+GSLHC+TMQL
Sbjct: 306 QAVLADAFPQH---QIVPVPCRPLIWQNGSLHCLTMQL 340
>ref|NP_299721.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||G82556 conserved hypothetical protein XF2442 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF85241.1|AE004053_4 (AE004053) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 363
Score = 241 bits (616), Expect = 6e-63
Identities = 129/336 (38%), Positives = 198/336 (58%), Gaps = 12/336 (3%)
Query: 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYE 62
R AE+E AIL+A+PH +DW+ + + E+++ ++ I + V++CV +D+ Y
Sbjct: 24 RFPAEWEPQSAILIAWPHANTDWSAHLADVEETYIALVAAITRFQMVIICVLDDDLQTYT 83
Query: 63 TLK------NLPGVEIARIDTNDTWARDFGAIS-VENHGVLECLDFGFNGWGLKYPSNLD 115
+ + V NDTW RD G I+ + + LDF F GWG K+ + D
Sbjct: 84 EARLRSASVAMQQVRFTVASYNDTWLRDSGPITLIGTNRDFRLLDFRFTGWGGKFEAKAD 143
Query: 116 NQVNFKLKSLGFLKHP-LKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIE 174
+Q+ L + G K+ + ++ + LEGG+IE+DGAG++LT +CL E R+P + ++
Sbjct: 144 DQLVSVLHANGLFKNTQMHSINFALEGGAIETDGAGTLLTTWRCLHE--RHPQRTRKTLD 201
Query: 175 NMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKM 234
L L +VLW +GYL+GDDTD+H DTLARF D+IVY +C++ D HY L+ M
Sbjct: 202 ANLTAWLAQNRVLWLEHGYLEGDDTDAHIDTLARFASTDSIVYQSCDNTTDSHYAELQAM 261
Query: 235 QEELKTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDAL 294
EL + +G Y+L PL K I D++ +RLPA+Y NFL+ A+++PTY+DP D +
Sbjct: 262 ANELTALRTTEGRAYRLFPLPWTKPILDQD-RRLPASYANFLIIEGAVLMPTYDDPADTI 320
Query: 295 ILETLKQHTPL-EVIGVDCNTLIKQHGSLHCVTMQL 329
L + P E++ V C LI Q+GSLHC+TMQ+
Sbjct: 321 AQSVLAEAFPTREIVPVPCRPLIWQNGSLHCITMQI 356
>ref|NP_662393.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72735.1| (AE012907) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 347
Score = 193 bits (491), Expect = 2e-48
Identities = 116/314 (36%), Positives = 178/314 (55%), Gaps = 15/314 (4%)
Query: 19 PHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYETLKNLPGVEIARIDTN 78
P F++ AY + + +N++ A A+ + D G K + RI TN
Sbjct: 37 PAVFAELAYQLSRSETVNINVLDD-AMEAQARELLKERDPEG----KYAERIVFHRIPTN 91
Query: 79 DTWARDFGAISV----ENHGVLECLDFGFNGWGLKY-PSNLDNQVNFKLKSLGFLKHPLK 133
D W RD G V + +++ +N WG KY P + DN V ++ L P+
Sbjct: 92 DAWCRDHGPNYVIRTQDGRRDKVIMNWEYNAWGGKYEPYDDDNAVPERVAKAQGL--PMV 149
Query: 134 TMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENMLKKELGAKQVLWYSYGY 193
+ +LEGG+I+ +GAG +LT T CLL NRNP L + IE L++ LG ++VLW G
Sbjct: 150 STGMVLEGGAIDVNGAGLLLTTTACLLNPNRNPSLGKAEIEAQLRRYLGIEKVLWLGDG- 208
Query: 194 LKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQEELKTFKKLDGTPYKLIP 253
+ GDDTD H D +ARF++++T+V + ED DE+Y L++ E LKT LDG P ++
Sbjct: 209 IAGDDTDGHVDDMARFVNENTVVIAVEEDPEDENYKPLRENYELLKTMTGLDGKPLNIVK 268
Query: 254 LEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILETLKQHTP-LEVIGVDC 312
L +P+ ++ + +RLPA+Y NF + N ++VPTY P+D ++ L+Q P EV+G+DC
Sbjct: 269 LPMPEPVYYDG-ERLPASYANFYIANTVVLVPTYRCPRDQQAIDILQQCFPKREVVGIDC 327
Query: 313 NTLIKQHGSLHCVT 326
+ LI G++HCVT
Sbjct: 328 SDLIWGLGAIHCVT 341
>ref|NP_345405.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK75045.1| (AE007397) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 361
Score = 176 bits (445), Expect = 4e-43
Identities = 115/354 (32%), Positives = 180/354 (50%), Gaps = 34/354 (9%)
Query: 4 MLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYET 63
M AE+E LM +P W + K A+ +F II+TIA+ +V + V +
Sbjct: 12 MPAEYEPHHGTLMIWPTRPGSWPFQGKAAKRAFTQIIETIAEGERVYLLVEQAYL---SE 68
Query: 64 LKNLPGVEIARID--TNDTWARDFG-AISVENHGVLECLDFGFNGWGLKYPS-----NLD 115
++ G ++ +D TND WARD G I V + G +D+ FN WG Y D
Sbjct: 69 AQSYLGDKVVYLDIPTNDAWARDTGPTILVNDKGKKLAVDWAFNAWGGTYDGLYQDYEED 128
Query: 116 NQVNFKLKSLGFLKHPL-KTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIE 174
+QV + L+ P+ P++LEGG+I SDG G++L CLL RNP+L + IE
Sbjct: 129 DQVASRFAEA--LERPVYDAKPFVLEGGAIHSDGQGTILVTESCLLSPGRNPNLTKEEIE 186
Query: 175 NMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKM 234
N L + LGA++V+W YG + D+T+ H D +A F+ +V + +DEND Y K
Sbjct: 187 NTLLESLGAEKVIWLPYGIYQ-DETNEHVDNVAAFVGPAELVLAWTDDENDPQYAMSKAD 245
Query: 235 QEELKTFKKLDGTPYKLIPLEIPKA------------IFDENQ------QRLPATYVNFL 276
E L+ G + + L IP I++E + +RL A+YVNF
Sbjct: 246 LELLEQETDAKGCHFTIHKLPIPAVRQVVTEEDLPGYIYEEGEEKRYAGERLAASYVNFY 305
Query: 277 LCNNALIVPTYNDPKDALILETLKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQL 329
+ N A++VP + D D + L+ L + P +V+G+ ++ G++HC+T Q+
Sbjct: 306 IANKAVLVPQFEDVNDQVALDILSKCFPDRKVVGIPARDILLGGGNIHCITQQI 359
>ref|NP_358416.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAK99626.1| (AE008458) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 361
Score = 174 bits (441), Expect = 1e-42
Identities = 114/354 (32%), Positives = 179/354 (50%), Gaps = 34/354 (9%)
Query: 4 MLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYET 63
M AE+E LM +P W + K A+ +F II+TIA+ +V + V +
Sbjct: 12 MPAEYEPHHGTLMIWPIRPGSWPFQGKAAKRAFTQIIETIAEGERVYLLVEQAYL---SE 68
Query: 64 LKNLPGVEIARID--TNDTWARDFG-AISVENHGVLECLDFGFNGWGLKYPS-----NLD 115
++ G ++ +D TND WARD G I V + G +D+ FN WG Y D
Sbjct: 69 AQSYLGDKVVYLDIPTNDAWARDTGPTILVNDKGKKLAVDWAFNAWGGTYDGLYQDYEED 128
Query: 116 NQVNFKLKSLGFLKHPL-KTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIE 174
+QV + L+ P+ P++LEGG+I SDG G++L CLL RNP+L + IE
Sbjct: 129 DQVASRFAEA--LERPVYDAKPFVLEGGAIHSDGQGTILVTESCLLSPGRNPNLTKEEIE 186
Query: 175 NMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKM 234
N L + LGA++V+W YG + D+T+ H D + F+ +V + +DEND Y K
Sbjct: 187 NTLLESLGAEKVIWLPYGIYQ-DETNEHVDNVVAFVGPAEVVLAWTDDENDPQYAMSKAD 245
Query: 235 QEELKTFKKLDGTPYKLIPLEIPKA------------IFDENQ------QRLPATYVNFL 276
E L+ G + + L IP I++E + +RL A+YVNF
Sbjct: 246 LELLEQETDAKGCHFTIHKLPIPAVRQVVTEEDLPGYIYEEGEEERYAGERLAASYVNFY 305
Query: 277 LCNNALIVPTYNDPKDALILETLKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQL 329
+ N A++VP + D D + L+ L + P +V+G+ ++ G++HC+T Q+
Sbjct: 306 IANKAVLVPQFEDVNDQVALDILSKCFPDRKVVGIPARDILLGGGNIHCITQQI 359
>ref|NP_296080.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||E75284 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF11904.1|AE002066_8 (AE002066) conserved hypothetical protein [Deinococcus radiodurans]
Length = 357
Score = 164 bits (415), Expect = 1e-39
Identities = 104/331 (31%), Positives = 165/331 (49%), Gaps = 10/331 (3%)
Query: 4 MLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYET 63
M E+ +A M +P + W + R+ + +++TIA+ +V + V + +
Sbjct: 21 MPPEWAPHEATWMGYPADDELWFGHLAGVRDEYAGLVRTIARFERVELLVRDEES-ERDA 79
Query: 64 LKNLPG--VEIARIDTNDTWARDFGAISV---ENHGVLECLDFGFNGWGLKYPSNLDNQV 118
L G V R+ +D+W RD G + V E + +++ FN WG K+ DN+V
Sbjct: 80 RARLTGHNVRFHRVPLDDSWLRDSGPLFVTRGEKDPEVALVNWRFNAWGGKFEWENDNRV 139
Query: 119 NFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENMLK 178
+ + H P +LEGG +E G G+ LT C L RNP L++ G +L
Sbjct: 140 PEYVAQFLGMGH--WDRPEVLEGGGLEIAGDGAALTTRSCFLTDTRNPGLSEEGYTFLLS 197
Query: 179 KELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQEEL 238
+LG K++ W G L+ D TD H DT+ RF ++ IV S D ND ++ +++ L
Sbjct: 198 DQLGVKKLHWLDGG-LENDHTDGHIDTITRFAAENVIVTSVEADPNDANHAVMQRNLATL 256
Query: 239 KTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILET 298
+ + G Y+++ L +P + + RLP TY NF + N ++VP Y DP D L+
Sbjct: 257 RELRTPGGDFYQIVELPLPAHRLEGAEGRLPPTYANFYIGNGFVVVPQYGDPNDKQALDV 316
Query: 299 LKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQ 328
L+ P EVIGV +I+ GS HC+T Q
Sbjct: 317 LRPLFPGREVIGVPSRKIIEGGGSFHCLTQQ 347
>ref|NP_267853.1| (NC_002662) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
gb|AAK05795.1|AE006400_5 (AE006400) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
Length = 366
Score = 163 bits (413), Expect = 2e-39
Identities = 109/351 (31%), Positives = 174/351 (49%), Gaps = 30/351 (8%)
Query: 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYE 62
RM EFE I M +P +W K + +F N+ + I++ V + V + Y+
Sbjct: 16 RMPGEFEAQDQIFMIWPERPDNWRDGAKPVQIAFTNVAKAISRFTPVTMLVSQSQ---YQ 72
Query: 63 TLK-NLPG-VEIARIDTNDTWARDFG-AISVENHGVLECLDFGFNGWG-----LKYPSNL 114
+ LP V + + ND+W RD G + + + G L D+ FN WG L +P +
Sbjct: 73 NARYQLPADVRVLEVSNNDSWVRDCGPSFVINDKGELRANDWTFNAWGGLVDGLYFPWDQ 132
Query: 115 DNQVNFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIE 174
D+ V K+ L + +T ++LEGGS DG G+VLT CLL + RNPH+++ IE
Sbjct: 133 DDLVAQKVCELERVDS-YRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPHMSKEDIE 191
Query: 175 NMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKM 234
N LK+ L A+++LW G + ++T+ H D +A F+ + EDE Y A +
Sbjct: 192 NKLKEHLNAEKILWLGDG-IDPEETNGHVDDVACFVAPGEVACIYTEDEKSPFYEAAQDA 250
Query: 235 QEELKTFKKLDGTPYKLIPLEIP-KAIFDENQQRLP---------------ATYVNFLLC 278
+ L G K+ L P K + + Q R+ A+Y+NFL+
Sbjct: 251 YKRLNQMTDAKGRQLKVHKLTCPAKNVTIKKQFRIDTVEGTMPREDGDICIASYMNFLIT 310
Query: 279 NNALIVPTYNDPKDALILETLKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQ 328
N +IVP Y D DAL L+ +++ P E++GV+ ++ G++HC+T Q
Sbjct: 311 NKGVIVPQYGDENDALALKQVQEMFPDREIVGVNTVEVVYGGGNIHCITQQ 361
>ref|NP_419030.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK22198.1| (AE005695) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 370
Score = 163 bits (412), Expect = 3e-39
Identities = 106/331 (32%), Positives = 168/331 (50%), Gaps = 15/331 (4%)
Query: 6 AEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIA----KHAKVLVCVHTNDIIGY 61
AE+ +A+ + FP W +++A++ ++ + +A + +++V +
Sbjct: 42 AEWAPHRAMWVGFPSHAELWQEDLEQAQQEVADLARALAGPGAERVRLMVVGDEAEAAAR 101
Query: 62 ETLKNLPGVEIARIDTNDTWARDFGAISVENHGVLECLDFGFNGWGLKYPSNLDNQVNFK 121
L + VEI R D W RD G I V++ G F FNGWG KY D+ V +
Sbjct: 102 ALLSDTT-VEIVRGQFGDIWLRDTGPIFVDDAGKAVAAGFKFNGWGGKYSLEGDDIVAEQ 160
Query: 122 LKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENMLKKEL 181
+ + PL +ILEGG+++ DG G++LT QCLL NRNP ++ L + L
Sbjct: 161 IAAASGA--PLVRNDFILEGGALDHDGNGTILTTRQCLLNDNRNPGWDEATANAALTEAL 218
Query: 182 GAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYST---CEDENDEHYTALKKMQEEL 238
GAK+VLW G LK D TD H D LARF+ + +D N + Y KM L
Sbjct: 219 GAKKVLWLGKG-LKNDHTDGHVDNLARFVAPGVVACPMGYGLDDPNADIYGDTAKM---L 274
Query: 239 KTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILET 298
G+P +++ + P + DE+ + +PA+++NFL+ N A+IVP Y + A +E
Sbjct: 275 AGMTDSRGSPLQVVRIPSPGKLLDEDGEPIPASHMNFLIANEAVIVPIYAEESGAFAVEV 334
Query: 299 LKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQ 328
+K P +VIG+ ++ GS HC++ Q
Sbjct: 335 IKGLFPERQVIGLPSTAILTGGGSFHCISQQ 365
>ref|NP_463571.1| (NC_003210) conserved hypothetical protein [Listeria monocytogenes
EGD-e]
emb|CAC98253.1| (AL591973) conserved hypothetical protein [Listeria monocytogenes]
Length = 363
Score = 162 bits (409), Expect = 6e-39
Identities = 102/352 (28%), Positives = 171/352 (47%), Gaps = 29/352 (8%)
Query: 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYE 62
RM EFEK + +P +W K A+++F+++ I+ V V ++ +
Sbjct: 14 RMPGEFEKHAGCYIIWPERPDNWRLGAKPAQKAFVDVATAISHFEPVTVVASSSQYVNAR 73
Query: 63 TLKNLPGVEIARIDTNDTWARDFGAISVENH-GVLECLDFGFNGWG-----LKYPSNLDN 116
+ + + + +D +D W RD G V N G + +D+ FN WG L +P + D+
Sbjct: 74 YMLS-DEIRVVEMDNDDAWVRDSGPTFVVNDSGDVRGVDWSFNSWGGLVDGLYFPWDKDD 132
Query: 117 QVNFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENM 176
QV K+ L K + ++LEGGSI DG G+++T +CLL + RNP L++ IE +
Sbjct: 133 QVAQKICELE-RKDRYRLADFVLEGGSIHVDGEGTLVTTEECLLSEGRNPQLSKQQIEMV 191
Query: 177 LKKELGAKQVLWYSYG-YLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQ 235
LK+ L ++++W G YL D+T+ H D + ++ + + +DE D Y K+
Sbjct: 192 LKEYLNLEKIIWLKRGIYL--DETNGHVDNIFNYVRPGVVALAWTDDETDPQYEISKECF 249
Query: 236 EELKTFKKLDGTPYKLIPLEIPKAIF-----------------DENQQRLPATYVNFLLC 278
+ L G ++ + +PK I E RL A+Y+N+
Sbjct: 250 DILSNETDAKGRKLEVHKINVPKPILITDEESKGVDAVEGTLPREEGDRLAASYINYYTA 309
Query: 279 NNALIVPTYNDPKDALILETLKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQL 329
N +I P + DP D L E L+Q P EV+GV ++ G++HC+T Q+
Sbjct: 310 NGGVIFPLFGDPNDELAREKLQQLYPNCEVVGVKAREILLGGGNIHCITQQV 361
>ref|NP_248983.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||F83608 conserved hypothetical protein PA0292 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG03681.1|AE004467_3 (AE004467) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 368
Score = 161 bits (408), Expect = 8e-39
Identities = 100/350 (28%), Positives = 169/350 (47%), Gaps = 26/350 (7%)
Query: 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYE 62
RM AE+E + M +P +W K A+ +F + + IA+ V VC
Sbjct: 14 RMPAEWEPHEQTWMVWPERPDNWRNGGKPAQAAFAAVAKAIARFEPVTVCASAGQYENAR 73
Query: 63 TLKNLPGVEIARIDTNDTWARDFG-AISVENHGVLECLDFGFNGWG-----LKYPSNLDN 116
+ + + I ++D W RD G +++ G + +D+GFN WG L +P D+
Sbjct: 74 ARLDDGNIRVVEISSDDAWVRDTGPTFVIDDKGDVRGVDWGFNAWGGFEGGLYFPWQRDD 133
Query: 117 QVNFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENM 176
QV K+ + + +T ++LEGGSI DG G+++T +CLL NRNPHL+Q IE
Sbjct: 134 QVARKILEIE-RRARYRTDDFVLEGGSIHVDGEGTLITTEECLLNHNRNPHLSQAEIERT 192
Query: 177 LKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQE 236
L+ L + ++W G L D+TD H D + ++ + +D++D +Y +
Sbjct: 193 LRDYLAVESIIWLPNG-LYNDETDGHVDNFCCYARPGEVLLAWTDDQDDPNYLRCQAALR 251
Query: 237 ELKTFKKLDGTPYKLIPLEIPKAIFDENQQ-----------------RLPATYVNFLLCN 279
L+ + G + + IP ++ ++ RL +YVNFL+ N
Sbjct: 252 VLEESRDAKGRKLVVHKMPIPGPLYATQEECDGVDIVEGSQPRDPSIRLAGSYVNFLIVN 311
Query: 280 NALIVPTYNDPKDALILETLKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQ 328
+I P+++DPKDA L++ P EV+ V ++ G++HC+T Q
Sbjct: 312 GGIIAPSFDDPKDAEARAILQRVFPEHEVVMVPGREILLGGGNIHCITQQ 361
>gb|AAL98713.1|AF349639_3 (AF349639) LabD [Lactobacillus sakei]
Length = 365
Score = 154 bits (388), Expect = 2e-36
Identities = 104/355 (29%), Positives = 177/355 (49%), Gaps = 35/355 (9%)
Query: 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYE 62
RM EFE + + + +P +W K A+ +F + +TIA+ V V V Y
Sbjct: 14 RMPGEFEAHKDVYLLWPERPDNWREGAKPAQATFAKVAETIAQFESVTVGVSDRQ---YT 70
Query: 63 TLKNL--PGVEIARIDTNDTWARDFGAISVENH-GVLECLDFGFNGWG-----LKYPSNL 114
+++ +++ + ND+W RD G V N G +D+ FN WG L +P +
Sbjct: 71 NARHMLADNIQVVEMSNNDSWIRDCGPTFVVNDKGDSRGVDWTFNAWGGLVDGLYFPWDK 130
Query: 115 DNQVNFKLKSL-GFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGI 173
D++V K+ + G ++ L + +LEGGS DG G++L +CLL RNP L++ I
Sbjct: 131 DDRVAQKVCEIEGRDRYRLDDL--VLEGGSTHVDGEGTLLVTEECLLSDGRNPQLSKEQI 188
Query: 174 ENMLKKELGAKQVLWYSYG-YLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALK 232
E++LK+ L ++++W G YL D+T+ H D +A F+ +V + +D++D Y K
Sbjct: 189 ESILKEYLNVEKIIWLKKGIYL--DETNGHVDNIANFVKPGQVVLAWTDDQSDPQYAISK 246
Query: 233 KMQEELKTFKKLDGTPYKLIPLEIPKAIF---DENQ--------------QRLPATYVNF 275
+ + L G ++ L +PK I E+Q RL A+YVN+
Sbjct: 247 ENYDMLINETDAKGRKLQVEKLYLPKPILITEAESQGVDTVDGTLPRLAGDRLAASYVNY 306
Query: 276 LLCNNALIVPTYNDPKDALILETLKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQL 329
N ++ P +NDP D E L++ P +++GV ++ G++HC+T Q+
Sbjct: 307 YTANGGIVFPLFNDPMDEKAQEILQKLYPDRKIVGVPAREILLGGGNIHCITQQI 361
>ref|NP_463573.1| (NC_003210) conserved hypothetical protein [Listeria monocytogenes
EGD-e]
emb|CAC98255.1| (AL591973) conserved hypothetical protein [Listeria monocytogenes]
Length = 369
Score = 151 bits (382), Expect = 9e-36
Identities = 98/352 (27%), Positives = 170/352 (47%), Gaps = 29/352 (8%)
Query: 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYE 62
RM E+E M +P +W K A++++ + I+ V + V N
Sbjct: 14 RMPGEYEPHIGCFMIWPERPDNWRLGGKPAQQNYKEVAVAISNFEPVTMFVSPNQY--KN 71
Query: 63 TLKNLPG-VEIARIDTNDTWARDFG-AISVENHGVLECLDFGFNGWG-----LKYPSNLD 115
K LP + + + +D W RD+G + V++ G + +D+GFN WG L +P + D
Sbjct: 72 ARKELPDTIRVIEMSNDDAWIRDYGPSFLVDDKGDMRGVDWGFNAWGGLLDGLYFPWDKD 131
Query: 116 NQVNFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIEN 175
NQ+ K+ L + + +ILEG SI DG G+++T +CLL + RNP+L + IE
Sbjct: 132 NQIAKKVCELERIDY-YSQKDFILEGCSIHVDGEGTLVTTEECLLSEGRNPNLTKIEIEQ 190
Query: 176 MLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQ 235
LKK A++V+W +G+ D+T+ H D + F+ +V S ++++D Y ++
Sbjct: 191 TLKKYFHAQKVIWLKHGFYL-DETNGHVDNIFNFVAPGEVVLSWTDNKSDPQYEISRECY 249
Query: 236 EELKTFKKLDGTPYKLIPLEIPKAIFDENQQ-----------------RLPATYVNFLLC 278
+ L G + + L P + + RL A+YVN+
Sbjct: 250 DILANKTDAKGRTFIIHKLHCPDPVLITQTESEGVEAINGTFPRQAGDRLAASYVNYYTA 309
Query: 279 NNALIVPTYNDPKDALILETLKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQL 329
N A+I P ++DPKD E L++ P +++G+ ++ G++HC+T L
Sbjct: 310 NGAIIFPLFDDPKDKDAQELLEKLYPDRKIVGIKAREILLGGGNIHCITQHL 361
>ref|NP_404556.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC89782.1| (AJ414145) conserved hypothetical protein [Yersinia pestis]
Length = 371
Score = 144 bits (362), Expect = 2e-33
Identities = 101/351 (28%), Positives = 161/351 (45%), Gaps = 31/351 (8%)
Query: 4 MLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYET 63
M AE+ A+ M +P+ +W A+++F + + I++ V + V + +
Sbjct: 24 MPAEWAPQDAVWMLWPYRQDNWRGKAIPAQQTFAKVAEAISRATPVFMGVPAEFMA--QA 81
Query: 64 LKNLPG-VEIARIDTNDTWARDFGAISVENHGVLE--CLDFGFNGWG-----LKYPSNLD 115
+P V + + ++D W RD G V N G E +D+ FN WG L D
Sbjct: 82 KATMPANVTLVEMASDDAWMRDTGPTMVIN-GAAERRAVDWQFNAWGGLNGGLYADWQQD 140
Query: 116 NQVNFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIEN 175
+V ++ FLK+ + P ILEGGSI +DG G++LT +CLL NRNPHLNQ IE
Sbjct: 141 EKVAVQVSD--FLKNAHYSAPLILEGGSIHTDGEGTLLTTAECLLNPNRNPHLNQAQIEQ 198
Query: 176 MLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQ 235
+L LG +W G + D+TD H D + F+ + +D+ D Y
Sbjct: 199 LLCDYLGVTHFIWLQDG-VYNDETDGHIDNMCCFVRPGEVALHWTDDQQDPQYARSVAAF 257
Query: 236 EELKTFKKLDGTPYKLIPLEIPKAIFDENQ----------------QRLPATYVNFLLCN 279
E L G K+ L P +++ + +RL +YVNFL+ N
Sbjct: 258 EVLSNTVDAKGRKLKIWKLPAPGPLYNTEEETFDVLTSDAVPRTAGERLAGSYVNFLISN 317
Query: 280 NALIVPTYNDPKDALILETLKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQL 329
+I P + D + L+Q P ++GV ++ G++HC+T Q+
Sbjct: 318 QQIIFPLLDSRTDGQANDLLQQMFPGYAIVGVPAREILLGGGNIHCITQQI 368
>ref|NP_048994.1| (NC_000852) A638R [Paramecium bursaria Chlorella virus 1]
pir||T18140 hypothetical protein A638R - Chlorella virus PBCV-1
gb|AAC96965.1| (U42580) A638R [Paramecium bursaria Chlorella virus 1]
Length = 360
Score = 139 bits (351), Expect = 3e-32
Identities = 91/330 (27%), Positives = 161/330 (48%), Gaps = 26/330 (7%)
Query: 4 MLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYET 63
M EFE+ + M FP +W A+++ N+ + I++ +V++ V + +
Sbjct: 10 MPGEFEQHKRTWMIFPFRNDNWRQEAVPAQKTITNLARKISEFEEVIMIVSRDHLNKAMD 69
Query: 64 LKNLPGVEIARIDTNDTWARDFGAISVENHGVLECLDFGFNGWGLKYPS-----NLDNQV 118
L + GV++ D++D WARD GA + N ++ + + FN WG + D ++
Sbjct: 70 LLHDSGVKMVTADSDDCWARDTGATFITNGKNVKAISWDFNSWGGNFDGLYTTWKNDQKI 129
Query: 119 NFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENMLK 178
+ + + +KT ++LEGGSI DG G+++T +CLL RNP ++Q IE LK
Sbjct: 130 AEYMARISNIPI-IKTPGFVLEGGSIHVDGEGTLITTKECLLSTGRNPTMSQQDIEYYLK 188
Query: 179 KELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQEEL 238
+ L ++++W YG + D+T+ H D +A F ++ + +D Y K + L
Sbjct: 189 EYLNVEKIIWLEYG-VADDETNGHVDNMACFSRPGEVILAWTDDPKHPQYERSKNAYKLL 247
Query: 239 KTFKKLDGTPYKLIPLEIPKAIFDENQQ-----------------RLPATYVNFLLCNNA 281
+ G + + IP +F ++ RL A+YVNF++ N A
Sbjct: 248 TKERDAKGRKLIIHKIHIPSDMFITEEEATGVVNSGLAVPRRAGDRLAASYVNFVMPNGA 307
Query: 282 LIVPTYNDPK-DALILETLKQHTP-LEVIG 309
+I PT+ D K DAL + ++ P E++G
Sbjct: 308 IIFPTFGDEKYDALAHKKFEEIFPEREIVG 337
>ref|NP_196434.1| (NM_120900) putative protein [Arabidopsis thaliana]
pir||T50502 hypothetical protein T22D6.110 - Arabidopsis thaliana
emb|CAB93718.1| (AL357612) putative protein [Arabidopsis thaliana]
Length = 383
Score = 139 bits (350), Expect = 4e-32
Identities = 97/361 (26%), Positives = 160/361 (43%), Gaps = 41/361 (11%)
Query: 4 MLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYET 63
M AE++ + +P +W + A+ F ++ + I+K V VC
Sbjct: 15 MPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFADVAKAISKFEPVTVCASPAQ--WENA 72
Query: 64 LKNLP-GVEIARIDTNDTWARDFGAISVENHGVLEC---------LDFGFNGWGLKYP-- 111
K LP + + + ND+W RD G + ++ +D+ FN WG
Sbjct: 73 RKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGC 132
Query: 112 -SNLDNQVNFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQ 170
++ + + K L + P ILEGGSI DG G+ L +CLL KNRNPH+++
Sbjct: 133 YNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEECLLNKNRNPHMSK 192
Query: 171 NGIENMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTA 230
IE LKK LG + +W G +DT+ H D + F ++ S +DE D Y
Sbjct: 193 EQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDDETDPQYER 252
Query: 231 LKKMQEELKTFKKLDGTPYKLIPLEIPKAIFDENQQ-----------------RLPATYV 273
+ L G ++I L IP+ ++ ++ RL A+YV
Sbjct: 253 SVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYV 312
Query: 274 NFLLCNNALIVPTYNDP---KDAL--ILETLKQHTPLEVIGVD-CNTLIKQHGSLHCVTM 327
NF + N +I P + DP K+A+ + +T H+ V+G++ ++ G++HC+T
Sbjct: 313 NFYIANGGIIAPQFGDPIRDKEAIRVLSDTFPHHS---VVGIENAREIVLAGGNIHCITQ 369
Query: 328 Q 328
Q
Sbjct: 370 Q 370
>dbj|BAB59127.1| (AB062682) hypothetical protein [Arabidopsis thaliana]
Length = 379
Score = 136 bits (343), Expect = 3e-31
Identities = 99/363 (27%), Positives = 163/363 (44%), Gaps = 45/363 (12%)
Query: 4 MLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYET 63
M AE++ + +P +W + A+ F ++ + I+K V VC
Sbjct: 11 MPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFADVAKAISKFELVTVCASPAQ--WENA 68
Query: 64 LKNLP-GVEIARIDTNDTWARDFGAISVENHGVLEC---------LDFGFNGW-----GL 108
K LP + + + ND+W RD G + ++ +D+ FN W G
Sbjct: 69 RKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWVGANDGC 128
Query: 109 KYPSNLDNQVNFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHL 168
+ D V+ K+ +L + +M ILEGGSI DG G+ L +CLL KNRNPH+
Sbjct: 129 YNDWSHDLLVSRKILALERIPRFQHSM--ILEGGSIHVDGEGTCLVTEECLLNKNRNPHM 186
Query: 169 NQNGIENMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHY 228
++ IE LKK LG + +W G +DT+ H D + F ++ S +DE D Y
Sbjct: 187 SKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDDETDPQY 246
Query: 229 TALKKMQEELKTFKKLDGTPYKLIPLEIPKAIFDENQQ-----------------RLPAT 271
+ L G ++I L IP+ ++ ++ RL A+
Sbjct: 247 ERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAAS 306
Query: 272 YVNFLLCNNALIVPTYNDP---KDAL--ILETLKQHTPLEVIGVD-CNTLIKQHGSLHCV 325
YVNF + N +I P + DP K+A+ + +T H+ V+G++ ++ G++HC+
Sbjct: 307 YVNFYIANGGIIAPQFGDPIRDKEAIRVLSDTFPHHS---VVGIENAREIVLAGGNIHCI 363
Query: 326 TMQ 328
T Q
Sbjct: 364 TQQ 366
>gb|AAD47622.1| (AF153708) unknown [Pseudomonas sp. BG33R]
Length = 376
Score = 133 bits (335), Expect = 2e-30
Identities = 86/312 (27%), Positives = 146/312 (46%), Gaps = 25/312 (8%)
Query: 4 MLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDIIGYET 63
M AE+ M +P +W K A+ + + + + IA+ V V V
Sbjct: 15 MPAEWAPQTQTWMIWPERPDNWRLGGKPAQAAHVAVAKAIARFEPVTVAVSAGQYENARA 74
Query: 64 LKNLPGVEIARIDTNDTWARDFGAISVENH-GVLECLDFGFNGWG-----LKYPSNLDNQ 117
++P + + + ++D W RD G V N G + +++ FN WG L P N D+Q
Sbjct: 75 RLDVPNIRLVEMSSDDAWVRDTGPTFVINDSGEVRGVNWDFNAWGGFDGGLYAPWNRDSQ 134
Query: 118 VNFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENML 177
V K+ + +T ++LEGGSI DG G+++T +CLL +NRNPHL++ IE +L
Sbjct: 135 VGGKILEIERAPR-YRTQGFVLEGGSIHVDGEGTLITTEECLLNRNRNPHLDRAAIEAVL 193
Query: 178 KKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQEE 237
L +++W G L D+TD H D ++ ++ + +D D +Y +
Sbjct: 194 ADHLAVDKIIWLPDG-LFNDETDGHVDNFCCYVRPGEVLLAWTDDPQDPNYPRCHAAMDV 252
Query: 238 LKTFKKLDGTPYKLIPLEIPKAIF------------DENQQRLPAT-----YVNFLLCNN 280
L+ G + + + IP ++ D +Q+R P+ VNFL+ N
Sbjct: 253 LQNSTDAKGRAFIVHKMPIPGPLYATEEECAGVDPVDGSQERNPSVRLAGRNVNFLIVNG 312
Query: 281 ALIVPTYNDPKD 292
+I P+++DP D
Sbjct: 313 GIIAPSFDDPLD 324
>gb|AAD19715.1| (AF124349) unknown [Zymomonas mobilis]
Length = 326
Score = 133 bits (334), Expect = 3e-30
Identities = 96/330 (29%), Positives = 154/330 (46%), Gaps = 20/330 (6%)
Query: 6 AEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAK----VLVCVHTNDIIGY 61
AE+ A+ + FP + S W ++ A+ + + +A + LV H
Sbjct: 7 AEWMPHDAVWIGFPSDASLWLEDLEPAQAEVVAFAKAVAAQGEGEKVYLVAAHKE---AA 63
Query: 62 ETLKNLPGVEIARI--DTNDTWARDFGAISVENHGVLECLDFGFNGWGLKYPSNLDNQVN 119
+ + G +I I D W RD + V+ F FNGWG KY + D +
Sbjct: 64 DQAVKMAGSDIEVICHPFGDIWLRDNAPLFVKEGDKKALALFRFNGWGGKYNLDGDQTIG 123
Query: 120 FKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENMLKK 179
L L P+ ++LEGGSI+ DG G V+T +CLL NRNP L++ I L+
Sbjct: 124 RDLAKDTAL--PVLEKNWVLEGGSIDGDGHGLVVTTEECLLNPNRNPELSRGDIARHLRN 181
Query: 180 ELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQEELK 239
+LG +VLW G L D TD H D LARF+ ++ +V D++D + +++ ++
Sbjct: 182 DLGYDRVLWLRKG-LHNDHTDGHVDNLARFVGENHLVVPIATDQDDPN----REVYDQAA 236
Query: 240 TFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILETL 299
G IP I DE +PA+Y+NF + N ++VP Y D+ I++
Sbjct: 237 QIATEFGVKVTRIPSTGRITIDDE---VVPASYMNFYIGNKVVVVPVYGAKNDSAIVQAF 293
Query: 300 KQHTP-LEVIGVDCNTLIKQHGSLHCVTMQ 328
+ P +V+ + ++ GS HC++ Q
Sbjct: 294 EALFPSRKVVALPAGHILTGGGSFHCISQQ 323
>ref|NP_629661.1| (NC_003888) conserved hypothetical protein SC1C2.08 [Streptomyces
coelicolor A3(2)]
pir||T29057 hypothetical protein SC1C2.08 - Streptomyces coelicolor
emb|CAA19975.1| (AL031124) conserved hypothetical protein SC1C2.08 [Streptomyces
coelicolor A3(2)]
Length = 339
Score = 114 bits (285), Expect = 2e-24
Identities = 70/267 (26%), Positives = 118/267 (43%), Gaps = 7/267 (2%)
Query: 68 PGVEIARIDTNDTWARDFGAISV-ENHGVLECLDFGFNGWGLKYPSNLDNQVNFKLKSLG 126
P V++ + +D W RD G V + G L +D+ FNGWG + + ++
Sbjct: 70 PDVDLVERELDDAWMRDIGPTFVTDGRGGLAAVDWVFNGWGAQDWARWEHDAEIARHVAD 129
Query: 127 FLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIENMLKKELGAKQV 186
P+ + P + EGG+I DG G+VL L RNP ++ +E + +LG
Sbjct: 130 LAAAPVLSSPLVNEGGAIHVDGEGTVLLTDTVQLGSGRNPGWSREEVEAEIHAKLGTTTA 189
Query: 187 LWYSYGYLKGD----DTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQEELKTFK 242
+W +G L GD T H D +A F T+V + D + + E L+
Sbjct: 190 IWLPHG-LAGDYGRYGTQGHVDIVAAFARPGTVVVHSQRDPRHPDHERSQLYLEILRGRT 248
Query: 243 KLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPKDALILETLKQH 302
G +++ + P + DE + +Y+N +CN +++ + DP D L ++
Sbjct: 249 DARGRRLEVVEVPAPTVLKDEEGEWADYSYINHYVCNGGVVLCAFGDPNDELAAGIFRRL 308
Query: 303 TPLEVIG-VDCNTLIKQHGSLHCVTMQ 328
P + VD T+ G +HC+T Q
Sbjct: 309 FPERTVTLVDARTIFAGGGGIHCITQQ 335
>gb|AAC27303.1| (AF073774) unknown [Prevotella albensis]
Length = 116
Score = 103 bits (257), Expect = 3e-21
Identities = 51/97 (52%), Positives = 72/97 (73%), Gaps = 3/97 (3%)
Query: 234 MQEELKTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPK-D 292
++ EL+ + L+G PY+L+ L +P AI+D + RLPATY NF++ N A+IVPTYN PK D
Sbjct: 8 LESELQELRTLEGNPYRLLRLPMPDAIYD-GEDRLPATYANFVILNGAVIVPTYNQPKND 66
Query: 293 ALILETLKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQ 328
A LE +++ P E+IG+D T+I+QHGSLHC+TMQ
Sbjct: 67 AEALEQVQKAFPNYEIIGLDARTVIRQHGSLHCLTMQ 103
>gb|AAD38981.1|AF153769_1 (AF153769) immunoreactive 62 kDa antigen PG96 [Porphyromonas
gingivalis]
Length = 556
Score = 52.0 bits (123), Expect = 9e-06
Identities = 81/339 (23%), Positives = 135/339 (38%), Gaps = 50/339 (14%)
Query: 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCV----HTNDI 58
R +AE+E+ A+L+ +P + +I+ +AK+ KV+ V N +
Sbjct: 56 RAIAEYERSAAVLVRYPFGIP-------------MELIKELAKNDKVITIVASESQKNTV 102
Query: 59 IGYETLK--NLPGVEIARIDTNDTWARDF-GAISVENHGVLECLDFGFNGWGLKYPSNLD 115
I T NL + T+ W RD+ G ++ + + +DF +N + N D
Sbjct: 103 ITQYTQSGVNLSNCDFIIAKTDSYWTRDYAGWFAMYDTNKVGLVDFIYN----RPRPNDD 158
Query: 116 NQVNFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIEN 175
++ + LG +K GG+ +DG GS + Q + N L+Q +
Sbjct: 159 EFPKYEAQYLGIEMFGMKLKQ---TGGNYMTDGYGSAV---QSHIAYTENSSLSQAQVNQ 212
Query: 176 MLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQ 235
+K LG + + + +H D ++L + I+ D + +H AL+ M
Sbjct: 213 KMKDYLG---ITHHDVVQDPNGEYINHVDCWGKYLAPNKILIRKVPDNHPQH-QALEDMA 268
Query: 236 EELKTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPK--DA 293
GT Y E+ +A+ Q Y N L+ NN + VP N P D
Sbjct: 269 AYFAAQTCAWGTKY-----EVYRALATNEQ-----PYTNSLILNNRVFVPV-NGPASVDN 317
Query: 294 LILETLKQHTP-LEVIGVD--CNTLIKQHGSLHCVTMQL 329
L K P E+IGV T +LHC T ++
Sbjct: 318 DALNVYKTAMPGYEIIGVKGASGTPWLGTDALHCRTHEV 356
>gb|AAF06719.1| (AF100668) peptidylarginine deiminase [Porphyromonas gingivalis]
Length = 556
Score = 52.0 bits (123), Expect = 9e-06
Identities = 81/339 (23%), Positives = 135/339 (38%), Gaps = 50/339 (14%)
Query: 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCV----HTNDI 58
R +AE+E+ A+L+ +P + +I+ +AK+ KV+ V N +
Sbjct: 56 RAIAEYERSAAVLVRYPFGIP-------------MELIKELAKNDKVITIVASESQKNTV 102
Query: 59 IGYETLK--NLPGVEIARIDTNDTWARDF-GAISVENHGVLECLDFGFNGWGLKYPSNLD 115
I T NL + T+ W RD+ G ++ + + +DF +N + N D
Sbjct: 103 ITQYTQSGVNLSNCDFIIAKTDSYWTRDYTGWFAMYDTNKVGLVDFIYN----RPRPNDD 158
Query: 116 NQVNFKLKSLGFLKHPLKTMPYILEGGSIESDGAGSVLTNTQCLLEKNRNPHLNQNGIEN 175
++ + LG +K GG+ +DG GS + Q + N L+Q +
Sbjct: 159 EFPKYEAQYLGIEMFGMKLKQ---TGGNYMTDGYGSAV---QSHIAYTENSSLSQAQVNQ 212
Query: 176 MLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSTCEDENDEHYTALKKMQ 235
+K LG + + + +H D ++L + I+ D + +H AL+ M
Sbjct: 213 KMKDYLG---ITHHDVVQDPNGEYINHVDCWGKYLAPNKILIRKVPDNHPQH-QALEDMA 268
Query: 236 EELKTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNNALIVPTYNDPK--DA 293
GT Y E+ +A+ Q Y N L+ NN + VP N P D
Sbjct: 269 AYFAAQTCAWGTKY-----EVYRALATNEQ-----PYTNSLILNNRVFVPV-NGPASVDN 317
Query: 294 LILETLKQHTP-LEVIGVD--CNTLIKQHGSLHCVTMQL 329
L K P E+IGV T +LHC T ++
Sbjct: 318 DALNVYKTAMPGYEIIGVKGASGTPWLGTDALHCRTHEV 356
>gb|AAL67495.1|AF459410_1 (AF459410) senescence-associated putative protein [Narcissus
pseudonarcissus]
Length = 143
Score = 49.3 bits (116), Expect = 6e-05
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTND-IIGY 61
RM AE+E Q M +P +W + + +F+ + I++ V +CV +
Sbjct: 16 RMPAEWEPHQQCWMGWPERPDNWRENARFGQHAFVEVASAISQFEPVTICVSSAQYTTAC 75
Query: 62 ETLKNLPGVEIARIDTNDTWARDFGAISV----------ENHGVLECLDFGFNGWG 107
L+N P + I + ND+W RD G V E H V +D+ FN WG
Sbjct: 76 HLLQNKPNIRIVEMSMNDSWFRDSGPTFVVLDRESSSGYEVHPVAG-IDWIFNSWG 130
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,995,481
Number of Sequences: 1026957
Number of extensions: 10131366
Number of successful extensions: 21395
Number of sequences better than 1.0e-02: 27
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21274
Number of HSP's gapped (non-prelim): 27
length of query: 330
length of database: 324,149,939
effective HSP length: 121
effective length of query: 209
effective length of database: 199,888,142
effective search space: 41776621678
effective search space used: 41776621678
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 97 (42.0 bits)