BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645114|ref|NP_207284.1| hypothetical protein
[Helicobacter pylori 26695]
(480 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207284.1| (NC_000915) hypothetical protein [Helicoba... 1008 0.0
ref|NP_223157.1| (NC_000921) putative Outer membrane protei... 967 0.0
ref|NP_223061.1| (NC_000921) putative Outer membrane protei... 199 6e-50
ref|NP_207874.1| (NC_000915) hypothetical protein [Helicoba... 194 3e-48
ref|NP_223437.1| (NC_000921) putative Outer membrane protei... 187 2e-46
ref|NP_207575.1| (NC_000915) hypothetical protein [Helicoba... 186 5e-46
ref|NP_207581.1| (NC_000915) hypothetical protein [Helicoba... 172 8e-42
ref|NP_223443.1| (NC_000921) putative Outer membrane protei... 172 8e-42
ref|NP_223568.1| (NC_000921) putative Outer membrane protei... 160 3e-38
ref|NP_207706.1| (NC_000915) hypothetical protein [Helicoba... 160 4e-38
ref|NP_207007.1| (NC_000915) hypothetical protein [Helicoba... 152 6e-36
ref|NP_222916.1| (NC_000921) putative Outer membrane protei... 146 5e-34
ref|NP_207283.1| (NC_000915) hypothetical protein [Helicoba... 143 4e-33
ref|NP_223156.1| (NC_000921) Outer membrane protein [Helico... 142 1e-32
ref|NP_223811.1| (NC_000921) putative Outer membrane protei... 139 1e-31
ref|NP_207958.1| (NC_000915) hypothetical protein [Helicoba... 137 3e-31
>ref|NP_207284.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64580 hypothetical protein HP0487 - Helicobacter pylori (strain 26695)
gb|AAD07555.1| (AE000563) H. pylori predicted coding region HP0487 [Helicobacter
pylori 26695]
Length = 480
Score = 1008 bits (2606), Expect = 0.0
Identities = 480/480 (100%), Positives = 480/480 (100%)
Query: 1 MPFCIFILISLGVRVLEIKKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGF 60
MPFCIFILISLGVRVLEIKKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGF
Sbjct: 1 MPFCIFILISLGVRVLEIKKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGF 60
Query: 61 NNQRYQPSKDIYPTGSYTSLLGELNLSMGLYKGLRAEVGAMMAALPYDSTAYQGNNIPNG 120
NNQRYQPSKDIYPTGSYTSLLGELNLSMGLYKGLRAEVGAMMAALPYDSTAYQGNNIPNG
Sbjct: 61 NNQRYQPSKDIYPTGSYTSLLGELNLSMGLYKGLRAEVGAMMAALPYDSTAYQGNNIPNG 120
Query: 121 QPGSRTDPFGAGIFWQYIGWYAGHSGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRY 180
QPGSRTDPFGAGIFWQYIGWYAGHSGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRY
Sbjct: 121 QPGSRTDPFGAGIFWQYIGWYAGHSGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRY 180
Query: 181 DAEEYDWFTSYTQGVEGFVKYKDTRFRVMYSDARASASSDWFWYFGRYYTSGKALMVADL 240
DAEEYDWFTSYTQGVEGFVKYKDTRFRVMYSDARASASSDWFWYFGRYYTSGKALMVADL
Sbjct: 181 DAEEYDWFTSYTQGVEGFVKYKDTRFRVMYSDARASASSDWFWYFGRYYTSGKALMVADL 240
Query: 241 KYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQN 300
KYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQN
Sbjct: 241 KYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQN 300
Query: 301 DIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNS 360
DIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNS
Sbjct: 301 DIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNS 360
Query: 361 IYDAEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNI 420
IYDAEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNI
Sbjct: 361 IYDAEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNI 420
Query: 421 RMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGFRIY 480
RMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGFRIY
Sbjct: 421 RMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGFRIY 480
>ref|NP_223157.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71931 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06017.1| (AE001478) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 465
Score = 967 bits (2499), Expect = 0.0
Identities = 457/465 (98%), Positives = 460/465 (98%)
Query: 16 LEIKKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTG 75
+EIKKYF Y+LFFLLFS LFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTG
Sbjct: 1 MEIKKYFLYALFFLLFSGLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTG 60
Query: 76 SYTSLLGELNLSMGLYKGLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFW 135
SYTSLLGELNLSMGLYKGLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFW
Sbjct: 61 SYTSLLGELNLSMGLYKGLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFW 120
Query: 136 QYIGWYAGHSGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGV 195
QYIGWYAGHSGL VQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGV
Sbjct: 121 QYIGWYAGHSGLNVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGV 180
Query: 196 EGFVKYKDTRFRVMYSDARASASSDWFWYFGRYYTSGKALMVADLKYEKDNLKINPYFYA 255
EGFVKYKDTR RVMYSDARASASSDWFWYFGRYYTSGKALM+ADLKYEKDNLKINPYFYA
Sbjct: 181 EGFVKYKDTRLRVMYSDARASASSDWFWYFGRYYTSGKALMIADLKYEKDNLKINPYFYA 240
Query: 256 IFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQ 315
IFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQ
Sbjct: 241 IFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQ 300
Query: 316 TYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGADVI 375
TYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGADVI
Sbjct: 301 TYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGADVI 360
Query: 376 NGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGNITKK 435
NGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGNITKK
Sbjct: 361 NGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGNITKK 420
Query: 436 GYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGFRIY 480
GYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNI YGFRIY
Sbjct: 421 GYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNITYGFRIY 465
>ref|NP_223061.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||H71942 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05925.1| (AE001470) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 479
Score = 199 bits (506), Expect = 6e-50
Identities = 147/496 (29%), Positives = 237/496 (47%), Gaps = 93/496 (18%)
Query: 37 SKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMG-LYKGLR 95
+ +QA+ + + ++ + S++K GFN ++ ++ IYPT ++ + +G+ N+ L K L+
Sbjct: 22 ASVQAFDYKIEVLAE--SFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLSKSLK 79
Query: 96 -------AEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYAGH---- 144
+VG + + YDST + G + + YIG++ G+
Sbjct: 80 DQGHVLEGKVGGTIGGIAYDSTKFNQ---------------GGSVIYNYIGYWDGYLGGK 124
Query: 145 ----SGLQVQKPRLA-----------------------MVHNAFLSYNYKKDKFSFGVKG 177
G + + L +++NAFL Y YK F KG
Sbjct: 125 RALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKD---IFAAKG 181
Query: 178 GRYDAEEYDWFTSYTQGVEGFVKYKDT-----RFRVMYSDARASASSDWFWYF------- 225
GRY + + +SYTQG E K KD + S RA A +W + F
Sbjct: 182 GRYQSNA-PYMSSYTQGFEISAKIKDKNEGSHKLWWFSSWGRAFAYGEWIYDFYSPRTVI 240
Query: 226 --GRYYTSGKALMVADLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFV 283
GR G + + D YE+ + ++P+F Y+PG+ + YD+NPNFN GFR
Sbjct: 241 KNGRTLNYG--IHLVDYTYERKGVSVSPFFQFSPGTYYSPGVAVGYDSNPNFNGVGFRSE 298
Query: 284 GTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANG 343
P+ A + D + V G +GQ+ R RF YN++ FGG+ YK NAN
Sbjct: 299 TKAYILLPVHAPL--KRDTYRYA-VKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANA 355
Query: 344 DIGIYGDPLGYNIWTNSIYD--AEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPR 401
IG G+PLG + WTNS+YD ++++V AD ++G+++ G ++ + W L RWT
Sbjct: 356 YIGTTGNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGAL 415
Query: 402 ADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHN 461
A+E S A+ + Y +K ++ +KLEY G +T G+ + G Y P PG++ L
Sbjct: 416 ANEASAAVNVGYKISK-SLTASVKLEYLGVMTHSGFTV---GSYRPT----PGSKAL--- 464
Query: 462 VYSDRSHIMFNIAYGF 477
YSDRSH+M ++ F
Sbjct: 465 -YSDRSHLMTTLSAKF 479
>ref|NP_207874.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64655 hypothetical protein HP1083 - Helicobacter pylori (strain 26695)
gb|AAD08134.1| (AE000615) H. pylori predicted coding region HP1083 [Helicobacter
pylori 26695]
Length = 479
Score = 194 bits (492), Expect = 3e-48
Identities = 144/496 (29%), Positives = 234/496 (47%), Gaps = 93/496 (18%)
Query: 37 SKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMG-LYKGLR 95
+ LQA+ + + + S++K GFN ++ ++ IYPT ++ + +G+ N+ L KGL+
Sbjct: 22 ASLQAFDYKIEV--SAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLPKGLK 79
Query: 96 -------AEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYAGH---- 144
++G + + YDST + G + + YIG++ G+
Sbjct: 80 DQGHVLEGKIGGTLGGVAYDSTKFNQ---------------GGSVIYNYIGYWDGYLGGK 124
Query: 145 ----SGLQVQKPRLA-----------------------MVHNAFLSYNYKKDKFSFGVKG 177
G + + L +++NAFL Y YK F KG
Sbjct: 125 RALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKD---IFLAKG 181
Query: 178 GRYDAEEYDWFTSYTQGVEGFVKYKDTRFRV-----MYSDARASASSDWFWYF------- 225
GRY + + + YTQG E K KD + S RA A +W + F
Sbjct: 182 GRYQSNA-PYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVV 240
Query: 226 --GRYYTSGKALMVADLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFV 283
GR G + + + YE+ + ++P+F Y+PG+ + YD+NPNFN GFR
Sbjct: 241 KNGRTLNYG--IHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSE 298
Query: 284 GTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANG 343
P+ + D + + G +GQ+ R RF YN++ FGG+ YK NAN
Sbjct: 299 TKAYILLPVH--DPLRRDTYRYA-IKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANA 355
Query: 344 DIGIYGDPLGYNIWTNSIYD--AEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPR 401
IG G+PLG + WTNS+YD ++++V AD ++G+++ G ++ + W L RWT
Sbjct: 356 YIGTTGNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTL 415
Query: 402 ADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHN 461
A+E S A+ + Y +K ++ +KLEY G +T G+ + G Y P PG++ L
Sbjct: 416 ANEASAAVNVGYKISK-SLTASVKLEYLGVMTHAGFTV---GSYRPT----PGSKAL--- 464
Query: 462 VYSDRSHIMFNIAYGF 477
YSDRSH+M ++ F
Sbjct: 465 -YSDRSHLMTTLSAKF 479
>ref|NP_223437.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71896 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06302.1| (AE001503) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 455
Score = 187 bits (475), Expect = 2e-46
Identities = 139/465 (29%), Positives = 219/465 (46%), Gaps = 34/465 (7%)
Query: 29 LLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSM 88
LLF S+ ++ F+ G S +K GFN+ + + I+PT ++ + +L +
Sbjct: 9 LLFVSILYNQSPLLAFDYKFSGVAESVSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDS 68
Query: 89 GLYK------GLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYA 142
L L+ VG ++ AL YDST + + GS + G +W ++G
Sbjct: 69 NLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQIYGSELF-YLIGRWWGFLGNAP 127
Query: 143 GHSGL--QVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGVEGFVK 200
L R +++N++L Y+Y DKF +K GRY D+ +SYTQG E K
Sbjct: 128 WKDSLIESDAHTRNYVLYNSYLFYSYG-DKFH--LKLGRY-LSNMDFMSSYTQGFELDYK 183
Query: 201 YKDTRFRVMYSD-ARASASSDWF--WYFGRYYTSGK-----ALMVADLKYEKDNLKINPY 252
+S RA A W WY G+ + A L + ++++ P+
Sbjct: 184 INSKIALKWFSSFGRALAFGQWIRDWYAPIVTEDGRKEVYDGIHAAQLYFSSKHVQVMPF 243
Query: 253 FYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGK 312
Y + APG+ I D+NP F G R T FP++A + ++ +G+
Sbjct: 244 AYFSPKIYGAPGVKIHIDSNPKFKGLGLRAQTTINVIFPVYAKDLYD---VYWRNSKIGE 300
Query: 313 SGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGA 372
G + RF YN++ FG Y+N GNAN IG YG+P+ +N NS+Y +N + A
Sbjct: 301 WGASLLIHQRFDYNEFNFGFGYYQNFGNANARIGWYGNPIPFNYRNNSVYGGVFSNAITA 360
Query: 373 DVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGNI 432
D ++G+++ G YRGF W ILGR+T + RA ERS+ L L Y + R+D+ LEYY
Sbjct: 361 DAVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLNLGYKWGSF-ARVDVNLEYYVVS 419
Query: 433 TKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGF 477
GY + Y GP + + DRS++M ++ + F
Sbjct: 420 MHNGYRLDYL--------TGPFNKAFKADA-QDRSNLMVSMKFFF 455
>ref|NP_207575.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64617 hypothetical protein HP0782 - Helicobacter pylori (strain 26695)
gb|AAD07835.1| (AE000590) H. pylori predicted coding region HP0782 [Helicobacter
pylori 26695]
Length = 455
Score = 186 bits (472), Expect = 5e-46
Identities = 139/466 (29%), Positives = 218/466 (45%), Gaps = 36/466 (7%)
Query: 29 LLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSM 88
LLF S+ ++ F+ G S++K GFN+ + + I+PT ++ + +L +
Sbjct: 9 LLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDS 68
Query: 89 GLYK------GLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIG--- 139
L L+ VG ++ AL YDST + + GS F G +W Y+G
Sbjct: 69 NLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELF-FFIGRWWGYLGDAP 127
Query: 140 WYAGHSGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGVEGFV 199
W R +++N++L Y+Y DKF +K GRY D+ + YTQG E
Sbjct: 128 WKDSRIESDAHT-RNYVLYNSYLFYSYG-DKFH--LKLGRY-LSNMDFMSGYTQGFELDY 182
Query: 200 KYKDTRFRVMYSD-ARASASSDWF--WYFGRYYTSGK-----ALMVADLKYEKDNLKINP 251
K +S RA A+ W WY G+ + L + +++ P
Sbjct: 183 KINSKIALKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQATP 242
Query: 252 YFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLG 311
+FY + APGI I D+NP F G R FP++A ++++ +G
Sbjct: 243 FFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLYD---VVWRNSKIG 299
Query: 312 KSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVG 371
+ G + RF N++ FG Y+N GNAN IG YG+P+ ++I +NSIY +N V
Sbjct: 300 EWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVT 359
Query: 372 ADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGN 431
AD ++G+++ G YRGF W ILGR+T + RA ERS+ L L Y + +D+ L+YY
Sbjct: 360 ADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSF-ASVDVNLQYYEV 418
Query: 432 ITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGF 477
GY + D P + N DRS++M ++ + F
Sbjct: 419 SMHTGYKVN--------DLTSPFNKAFKANT-QDRSNLMVSVKFFF 455
>ref|NP_207581.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64618 hypothetical protein HP0788 - Helicobacter pylori (strain 26695)
gb|AAD07845.1| (AE000591) H. pylori predicted coding region HP0788 [Helicobacter
pylori 26695]
Length = 499
Score = 172 bits (436), Expect = 8e-42
Identities = 142/516 (27%), Positives = 223/516 (42%), Gaps = 107/516 (20%)
Query: 34 LFLSKLQAYKFNMSIVGKVS----SYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMG 89
LFL Q+ F++ + K+ S++K GFNN+ +K +YPT ++ +++ + +
Sbjct: 15 LFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFT 74
Query: 90 --LYKGLRAE-------VGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGW 140
L K A +G A+ YDST N + G+ W Y+G+
Sbjct: 75 ELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMA--------WNYVGY 126
Query: 141 YAGHSGLQVQKP----------------------------------------------RL 154
+ G G QKP R
Sbjct: 127 WGGLVG---QKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRN 183
Query: 155 AMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGVEGFVKYKDTRFRVMYSDAR 214
+++NA+L YNYK F ++GGRY++ D+ + Y QG++ + + +F S R
Sbjct: 184 YVIYNAYLRYNYKD---IFEIRGGRYESPA-DYMSGYNQGLDMTLNLGNFKFWWFSSFGR 239
Query: 215 ASASSDWFWYF----------GRYYTSGKALMVADLKYEKDNLKINPYFYAIFQRMYAPG 264
A ++W + F G+ G A Y+ I P+ Y Y P
Sbjct: 240 GFAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYAIWNYK--GWSIQPFVYFSPFNEYDPN 297
Query: 265 INITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFFRTRFY 324
ITYD+NP F GFR P +A D F +P GK+ + + +F
Sbjct: 298 FTITYDSNPTFTGLGFRSQTDVTVLNPFYAK--RFWDTYQFG-MPAGKNAHSLMIKQKFE 354
Query: 325 YNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNI---VGADVINGFLYV 381
+N++ FG +YK+ GNAN IG +G+ LG++ WTN++Y +N++ + A+ F +
Sbjct: 355 WNEYNFGFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFG 414
Query: 382 GSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGY 441
G +R W +LGR T PRA+E+ L+L Y K N D+K EYY + +GY +G+
Sbjct: 415 GGVHRKLLWGLLGRLTYGPRANEQVLSLNFGYKFTK-NFSADIKFEYYNVLMHQGYKMGW 473
Query: 442 CGMYVPVDPNGP--GTQPLTHNVYSDRSHIMFNIAY 475
NGP +QP T DRSHI I +
Sbjct: 474 ---------NGPKLDSQPATD---QDRSHIFTEIVW 497
>ref|NP_223443.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71895 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06307.1| (AE001504) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 499
Score = 172 bits (436), Expect = 8e-42
Identities = 143/514 (27%), Positives = 226/514 (43%), Gaps = 103/514 (20%)
Query: 34 LFLSKLQAYKFNMSIVGKVS----SYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMG 89
LFL Q+ F++ + K+ S++K GFNN+ +K IYPT ++ +++ + +
Sbjct: 15 LFLFFSQSEAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGIYPTETFMTIMAYMQVDFT 74
Query: 90 --LYKGLRAE-------VGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGW 140
L K A +G A+ YDST N + P+GA + W Y+G+
Sbjct: 75 ELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTG-------KPYGA-MTWNYVGY 126
Query: 141 YAGHSGLQVQKP----------------------------------------------RL 154
+ G G QKP R
Sbjct: 127 WGGLVG---QKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALAASTCAKTYADHTRN 183
Query: 155 AMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGVEGFVKYKDTRFRVMYSDAR 214
+++NA+L YNYK F ++GGRY++ D+ + Y QG++ + + +F S R
Sbjct: 184 YVIYNAYLRYNYKD---IFEIRGGRYESPA-DYMSGYNQGLDMTLNLGNFKFWWFSSFGR 239
Query: 215 ASASSDWFW--YFGRYYTSGKALMVAD------LKYEKDNLKINPYFYAIFQRMYAPGIN 266
A ++W + Y + YT + + + I P+ Y Y P
Sbjct: 240 GFAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYIIWNYKGFSIQPFVYFSPFNEYDPNFT 299
Query: 267 ITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFFRTRFYYN 326
ITYD+NP F GFR P +A D F + GK+ + + +F +N
Sbjct: 300 ITYDSNPTFTGLGFRSQTDVTVLNPFYAK--RFWDTYQFGMLA-GKNAHSLMIKQKFEWN 356
Query: 327 KWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNI---VGADVINGFLYVGS 383
++ FG +YK+ GNAN IG +G+ LG++ WTN++Y +N++ + A+ F + G
Sbjct: 357 EYNFGFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGG 416
Query: 384 QYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCG 443
+R W +LGR T PRA+E+ L+L L Y K N D+K EYY + +GY +G+
Sbjct: 417 VHRKLLWGLLGRLTYGPRANEQVLSLNLGYKFTK-NFSADIKFEYYNVLMHQGYKMGW-- 473
Query: 444 MYVPVDPNGP--GTQPLTHNVYSDRSHIMFNIAY 475
NGP +QP T DRSHI I +
Sbjct: 474 -------NGPKLDSQPATD---QDRSHIFTEIVW 497
>ref|NP_223568.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71880 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06428.1| (AE001514) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 514
Score = 160 bits (405), Expect = 3e-38
Identities = 147/525 (28%), Positives = 224/525 (42%), Gaps = 80/525 (15%)
Query: 19 KKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYT 78
+KYF S LL S L ++A+ + S G+V +++K GFNN + K IYPT S+
Sbjct: 4 EKYFLTSSLSLL--SFLLCPVEAFDYRFS--GRVENFSKIGFNNSQINTKKGIYPTESFI 59
Query: 79 SLLGELNLSMGLY-KG-----LRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAG 132
++ + + L KG L +G +AA+PYD T Y N GS + F G
Sbjct: 60 DIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYYINQANGKVFGSIVENFIGG 119
Query: 133 ----IFWQYIG-WYAGHSGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDW 187
F +Y+G YAG S R +V AFL Y+YK FG K GRY+A D+
Sbjct: 120 YHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKD---VFGFKAGRYEA-NIDF 175
Query: 188 FTSYTQGVEGFVK-YKDTRFRVMY----SDARASASSDWFWYF----------GRYYTSG 232
+ QG E + + YK R+ + S R A + W + F G S
Sbjct: 176 MSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSN 235
Query: 233 KALMVA----DLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVG 288
+ Y L ++Y + APG + YDTN NF N GFR +
Sbjct: 236 DFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMT 295
Query: 289 FFPIFAT---PANQNDIILFQQVP----LGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNA 341
FP++ N L P LG++G T R F+++ + + Y GN+
Sbjct: 296 TFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNS 355
Query: 342 NGDIGIYGDP---------------------LGYNIWTNSIYDAEINNIVGADVINGFLY 380
+ +G + P +GY+ W N+ YD + I A+ +
Sbjct: 356 DAFLGSHTMPRGNNTSYISNEISVTTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTS 415
Query: 381 VGSQYRGFSWKILGRWTDS--------PRADERSLALFLSYFSNKYNIRMDLKLEYYGNI 432
VG ++ F+W + GR + + RA+E SL SY + ++ ++ ++ YYG
Sbjct: 416 VGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSLQFNASYAFTE-SVLLNFRITYYGAR 474
Query: 433 TKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGF 477
KGY GY G +P+G + Y DRS++M N+ F
Sbjct: 475 INKGYQAGYFGAPKFNNPDGDFSAN-----YQDRSYMMTNLTLKF 514
>ref|NP_207706.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64634 hypothetical protein HP0914 - Helicobacter pylori (strain 26695)
gb|AAD07966.1| (AE000601) H. pylori predicted coding region HP0914 [Helicobacter
pylori 26695]
Length = 514
Score = 160 bits (404), Expect = 4e-38
Identities = 148/525 (28%), Positives = 223/525 (42%), Gaps = 80/525 (15%)
Query: 19 KKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYT 78
+KYF S LL S L +A+ + S G+V +++K GFNN + K IYPT S+
Sbjct: 4 EKYFLTSSLSLL--SFLLCPAEAFDYRFS--GRVENFSKIGFNNSQINTKKGIYPTESFI 59
Query: 79 SLLGELNLSMGLY-KG-----LRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAG 132
++ + + L KG L +G +AA+PYD T Y N GS + F G
Sbjct: 60 DIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYDINQANGKIFGSIVENFIGG 119
Query: 133 ----IFWQYIG-WYAGHSGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDW 187
F +Y+G YAG S R +V AFL Y+YK FG K GRY+A D+
Sbjct: 120 YHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKD---VFGFKAGRYEA-NIDF 175
Query: 188 FTSYTQGVEGFVK-YKDTRFRVMY----SDARASASSDWFWYF----------GRYYTSG 232
+ QG E + + YK R+ + S R A + W + F G S
Sbjct: 176 MSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSN 235
Query: 233 KALMVA----DLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVG 288
+ Y L ++Y + APG + YDTN NF N GFR +
Sbjct: 236 DFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFQNVGFRSQSMIMT 295
Query: 289 FFPIFAT---PANQNDIILFQQVP----LGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNA 341
FP++ N L P LG++G T R F+++ + + Y GN+
Sbjct: 296 TFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNS 355
Query: 342 NGDIGIYGDP---------------------LGYNIWTNSIYDAEINNIVGADVINGFLY 380
+ +G + P +GY+ W N+ YD + I A+ +
Sbjct: 356 DAFLGSHTMPRGNNTSYIGSEISITTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTS 415
Query: 381 VGSQYRGFSWKILGRWTDS--------PRADERSLALFLSYFSNKYNIRMDLKLEYYGNI 432
VG ++ F+W + GR + + RA+E SL SY + +I ++ ++ YYG
Sbjct: 416 VGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSLQFNASYAFTE-SILLNFRITYYGAR 474
Query: 433 TKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGF 477
KGY GY G +P+G + Y DRS++M N+ F
Sbjct: 475 INKGYQAGYFGAPKFNNPDGDFSAN-----YQDRSYMMTNLTLKF 514
>ref|NP_207007.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64546 hypothetical protein HP0209 - Helicobacter pylori (strain 26695)
gb|AAD07285.1| (AE000541) H. pylori predicted coding region HP0209 [Helicobacter
pylori 26695]
Length = 450
Score = 152 bits (385), Expect = 6e-36
Identities = 125/476 (26%), Positives = 214/476 (44%), Gaps = 57/476 (11%)
Query: 26 LFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELN 85
L FL +FL+ F I +V S+++ FN K IYPTGSY + G L
Sbjct: 8 LGFLALHGVFLNA-----FEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQ 62
Query: 86 LSMGLY-KGLRAE-----VGAMMAALPYDSTAY---QGNNIPNGQPGSRTDPFGAGIFWQ 136
+ + L KG+ VG + +L YDST + + N QP + W
Sbjct: 63 VDLSLLPKGIENHKLGFGVGGEIGSLAYDSTKFLMDEANPKAGFQPAN----------WY 112
Query: 137 YIGWYAGH---------SGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDW 187
Y+G + G+ + Q R +++N +L Y YK FG+K GRY ++ +
Sbjct: 113 YMGRWEGYLMQHSQNWTREQKAQNARPYVLYNLYLDYQYKD---IFGIKLGRYPSKAL-F 168
Query: 188 FTSYTQGVEGFVKYKDTRFRVMYSDARASASS----DWFWYFGRYYTSGKALMVADLKYE 243
+ + QG E F ++K R + RA A+ D++ + +L YE
Sbjct: 169 LSGFNQGFEVFYRWKKFRIEWFSTFGRALANEQSIRDFYAPVNYKQKINYGMHNLNLIYE 228
Query: 244 KDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDII 303
+++ P+ + + APG IT+DT + + +R TF +FP+++ +++
Sbjct: 229 NKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESL-WRIQTTFYAWFPLYSDYLSKD--- 284
Query: 304 LFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLG--YNIWTNSI 361
++ +GK + F R ++ ++FG SVYKN GN N +G G P+ Y+ ++
Sbjct: 285 YYRASLIGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSPVDPFYDTKDDTP 344
Query: 362 YDAEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIR 421
Y+ +N A+ I ++G + ++ G+ T SPRAD +SL + Y + K +I
Sbjct: 345 YEDAYSNFYNANSITINAFIGKSVKNLLVQLYGKLTYSPRADSQSLGVTFKY-NLKKHIY 403
Query: 422 MDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGF 477
+ L Y KGY +G+ G P +RS++M +++Y F
Sbjct: 404 LMLMFNGYQITMHKGYKVGFF---------TSGYNPDFAQTIQNRSYLMSSMSYRF 450
>ref|NP_222916.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71963 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05769.1| (AE001457) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 438
Score = 146 bits (369), Expect = 5e-34
Identities = 122/460 (26%), Positives = 209/460 (44%), Gaps = 48/460 (10%)
Query: 39 LQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMGLY-KGLRAE 97
L A+++ +S +V S+++ FN K IYPTGSY + G L + L KG+
Sbjct: 6 LSAFEYQVS--ARVGSFSRIAFNQSIINSKKGIYPTGSYVTTTGALQVDSSLLPKGIENH 63
Query: 98 -----VGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYAGH-------- 144
VG + AL YDST + I P + P W Y+G + G+
Sbjct: 64 KLGFGVGGEIGALAYDSTKFL---IDEANPKAGFQPAN----WYYMGRWEGYLMQHSQNW 116
Query: 145 -SGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGVEGFVKYKD 203
+ Q R +++N +L Y YK FG+K GRY ++ + + + QG E F ++K
Sbjct: 117 TREQKAQNARPYVLYNLYLDYQYKD---IFGIKLGRYPSKAL-FLSGFNQGFEIFYRWKK 172
Query: 204 TRFRVMYSDARASASSDWFWYFGRYYTSGKALMVA----DLKYEKDNLKINPYFYAIFQR 259
+ + RA A+ + F + + +L YE ++I P+ + +
Sbjct: 173 FKIVWFSTFGRALANEQYIRDFYAPVNYKQKINYGMHNFNLVYENKYIRIAPFIWFYPKN 232
Query: 260 MYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFF 319
APG IT+DT + + +R TF +FP+++ +++ ++ +GK F
Sbjct: 233 FNAPGFEITHDTKSYWKSL-WRIQTTFYAWFPLYSDYLSKD---YYRAALVGKKSAALFV 288
Query: 320 RTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLG--YNIWTNSIYDAEINNIVGADVING 377
R + ++FG SVYKN GNA+ +G G P+ Y+ ++ Y+ +N A+ I
Sbjct: 289 FQRVNFRSYRFGWSVYKNFGNASVQLGWNGSPIDPFYDTKDDTPYEDAYSNFYNANSITI 348
Query: 378 FLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGY 437
++G + ++ G+ T SPRAD +SL + Y + K +I L + Y KGY
Sbjct: 349 NAFIGKSIKNLLVQLYGKLTYSPRADAQSLGVTFKY-NLKKHIYFMLMVNGYQITMHKGY 407
Query: 438 CIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGF 477
+G+ G P +RS++M +++Y F
Sbjct: 408 KVGFF---------TSGYNPDFAQTIQNRSYLMSSMSYRF 438
>ref|NP_207283.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64580 hypothetical protein HP0486 - Helicobacter pylori (strain 26695)
gb|AAD07554.1| (AE000563) H. pylori predicted coding region HP0486 [Helicobacter
pylori 26695]
Length = 528
Score = 143 bits (361), Expect = 4e-33
Identities = 141/509 (27%), Positives = 203/509 (39%), Gaps = 97/509 (19%)
Query: 50 GKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMGLYKGLRAEVGAMMAALPYDS 109
G ++ K GFN+ P K IYPT ++ +L G+L S+ L +G +G ++ YD
Sbjct: 36 GDFINFAKVGFNHSPINPVKGIYPTETFVNLTGKLEGSVHLGRGWTVNLGGVLGGQAYDG 95
Query: 110 TAYQ-----------------GNNIPN-----------GQPGSRTDPFGAGIFWQYIGWY 141
T Y G + + PG +P G G W+Y+G +
Sbjct: 96 TKYDRWAKDFTPPSYWDKTSCGTDSMSLCMNATKMWQQSGPGGVINPRGIG--WEYMGEW 153
Query: 142 AG----HSGLQVQKP---RLAMVHNAFLSYNYKKDKFSFGVKGGRYDA---EEYDWFTSY 191
G + P R V+ A L+Y D + GR+D E+ DW
Sbjct: 154 NGLFPNYYPANAYLPGGSRRYQVYKANLTY----DSDRVHMVMGRFDITEQEQMDWIYQL 209
Query: 192 TQGVEGFVKY-KDTRFRVMYSDARASASSDWFWYFGRYYTSGKALMVADLKYEKD-NLKI 249
QG G K K+ +F + R A W F Y + A + Y NL I
Sbjct: 210 FQGFYGTFKLTKNMKFLLFSGWGRGIADGQWL--FPIYREKPWGVHKAGIIYRPTKNLMI 267
Query: 250 NPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPI--------FATPANQND 301
+PY Y I PG I YDTNP F+ +G R TF + PA N
Sbjct: 268 HPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRNRTTFYALYDYRWNNAEYGRYAPARYNT 327
Query: 302 IILF-----QQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPL---G 353
F + G G T R N + G Y NIGN N ++G +G+P+ G
Sbjct: 328 WDPFLDNGKWRGLQGPGGATLLLRHHIDINNYFVVGGAYLNIGNPNMNLGTWGNPVAVDG 387
Query: 354 YNIWTNSIYD---AEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALF 410
W SIY A I+NI AD ++ G ++ FSW + R+T +PRA E + ++
Sbjct: 388 IEQWVGSIYSLGFAGIDNITDADAFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGIGMY 447
Query: 411 LSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHN--------- 461
L Y +K+ ++ LKL + + GY G + GP QPL N
Sbjct: 448 LDYQFSKH-VKAGLKLVWLEFQIRAGYNPGTGFL-------GPNGQPLNLNTGLFESSAF 499
Query: 462 -------------VYSDRSHIMFNIAYGF 477
+ DRSH+M +I+Y F
Sbjct: 500 AQGPQNMGGIAKSITQDRSHLMTHISYSF 528
>ref|NP_223156.1| (NC_000921) Outer membrane protein [Helicobacter pylori J99]
pir||F71931 outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06016.1| (AE001478) Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 142 bits (357), Expect = 1e-32
Identities = 140/507 (27%), Positives = 201/507 (39%), Gaps = 93/507 (18%)
Query: 50 GKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMGLYKGLRAEVGAMMAALPYDS 109
G +++K GFN P K IYPT ++ +L G+L S+ L +G VG ++ YD+
Sbjct: 36 GDFINFSKVGFNRSPINPVKGIYPTETFVNLTGKLEGSVHLGRGWTVNVGGVLGGQVYDN 95
Query: 110 TAYQG-------------------------NNIPNGQ---PGSRTDPFGAGIFW--QYIG 139
T Y N Q PG DP G G + ++ G
Sbjct: 96 TRYDRWAKDFTPPSYWDKTSCGTDSLSLCMNATKMWQQQGPGGIIDPRGIGYMYMGEWNG 155
Query: 140 WYAGHSGLQVQKP---RLAMVHNAFLSYNYKKDKFSFGVKGGRYDA---EEYDWFTSYTQ 193
+ + P R V+ A L+Y D + GR+D E+ DW Q
Sbjct: 156 LFPNYYPANAYLPGHSRRYEVYKANLTY----DSDRVHMVMGRFDVTEQEQMDWIYQLFQ 211
Query: 194 GVEGFVKY-KDTRFRVMYSDARASASSDWFWYFGRYYTSGKALMVADLKYEKD-NLKINP 251
G G K K+ +F + S R A W F Y + A + Y NL I+P
Sbjct: 212 GFYGTFKLTKNMKFLLFSSWGRGIADGQWL--FPIYREKPWGIHKAGIIYRPTKNLMIHP 269
Query: 252 YFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPI--------FATPANQNDII 303
Y Y I PG I YDTNP F+ +G R TF + PA N
Sbjct: 270 YVYLIPMVGTLPGAKIEYDTNPEFSGRGIRNKTTFYVLYDYRWNNAEYGRYAPARYNTWD 329
Query: 304 LF-----QQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPL---GYN 355
F + G G T + N + G Y NIGN N ++G +G+P+ G
Sbjct: 330 PFLDNGKWRGLQGPGGATLYLHHHIDINNYFVVGGAYLNIGNPNMNLGTWGNPVALDGIE 389
Query: 356 IWTNSIYD---AEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLS 412
W IY A I+NI AD ++ G ++ FSW + R+T +PRA E + ++L
Sbjct: 390 QWVGGIYSLGFAGIDNITDADAFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGIGMYLD 449
Query: 413 YFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHN----------- 461
Y +K+ ++ LKL + + GY G + GP QPL N
Sbjct: 450 YQFSKH-VKAGLKLVWLEFQIRAGYNPGTGFL-------GPNGQPLNLNNGLFESSAFAQ 501
Query: 462 -----------VYSDRSHIMFNIAYGF 477
+ DRSH+M +I+Y F
Sbjct: 502 GPQNMGGIAKSITQDRSHLMTHISYSF 528
>ref|NP_223811.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71849 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06676.1| (AE001537) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 471
Score = 139 bits (349), Expect = 1e-31
Identities = 134/497 (26%), Positives = 206/497 (40%), Gaps = 81/497 (16%)
Query: 29 LLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSM 88
L F + + LQ ++ ++ G V + GFN + + IYP + ++ G L L
Sbjct: 8 LFFGAFLSTSLQGFEAKLN--GFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGF 65
Query: 89 GLYKG------LRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYA 142
L L+ ++G M+ ++ YD T + GS + + G+Y
Sbjct: 66 SLLPKKVSDHVLKGKIGGMVGSIFYDGTK-------KFEDGS--------VAYNLFGYYD 110
Query: 143 GHSGLQ---VQKPRLA---MVHN----------AFLSYNYKKDKFSFGVKGGRYDAEEYD 186
G G+ +Q L M HN A+L Y YK F +K GRY
Sbjct: 111 GFMGVYTNILQTDSLETQNMKHNKNVRNYVFSDAYLEYAYKN---YFEIKAGRY-LSTMP 166
Query: 187 WFTSYTQGVEGFVKYKDTRFRVMYSDARASASS----DWFWYF------------GRYYT 230
+ + TQG + +YK R S RA A DWF G Y +
Sbjct: 167 YKSGQTQGFQVSGQYKHARLTWFSSWGRAFAYGSFLMDWFAARTTYSGGFTKNNNGGYDS 226
Query: 231 SGKALM----VADLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTF 286
G+ ++ L Y+ I ++Y Q APG+ I +D+NPNF+ GFR
Sbjct: 227 HGRKVLYGTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAI 286
Query: 287 VGFFPIF----ATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNAN 342
+GFFPI+ +N + + + P ++GQ R RF N + + YK NAN
Sbjct: 287 IGFFPIYYPWMIVKSNGSPVYRY-DTPATQNGQNLIIRQRFDINNYNVSIAFYKVFQNAN 345
Query: 343 GDIGIYGDPLGYNIWTNSIYDAEINNIVGADVINGFLYVGSQY--RGFSWKILGRWTDSP 400
G IG G+P G + +NS+Y + D FL G + + F+WK ++++S
Sbjct: 346 GWIGNMGNPSGVIMGSNSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWKFATQYSNSV 405
Query: 401 RADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTH 460
+ E + L Y +Y + + L YYG T KG+ G G PV N P
Sbjct: 406 VSWEARAMISLGYKFTEY-LSGSVDLAYYGVHTNKGFKPGENG---PVPKNFPA------ 455
Query: 461 NVYSDRSHIMFNIAYGF 477
+YSDRS + + F
Sbjct: 456 -LYSDRSALYTALVASF 471
>ref|NP_207958.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64665 hypothetical protein HP1167 - Helicobacter pylori (strain 26695)
gb|AAD08213.1| (AE000622) H. pylori predicted coding region HP1167 [Helicobacter
pylori 26695]
Length = 471
Score = 137 bits (345), Expect = 3e-31
Identities = 129/495 (26%), Positives = 208/495 (41%), Gaps = 77/495 (15%)
Query: 29 LLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSM 88
L F + S LQ ++ ++ G V + GFN + + IYP + ++ G L L
Sbjct: 8 LFFGAFLSSSLQGFEAKLN--GFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGF 65
Query: 89 GLYKG------LRAEVGAMMAALPYDSTA-YQGNNIPNGQPGSRTDPFGAGIFWQYIGWY 141
L L+ ++G M+ ++ YD T ++ +++ +F Y G+
Sbjct: 66 SLLPKKVSDHVLKGKIGGMVGSIFYDGTKKFEDSSV------------AYNLFGYYDGFM 113
Query: 142 AGHSGLQVQKPRLA-------------MVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWF 188
G++ + +Q LA + +A+L Y YK F +K GRY +
Sbjct: 114 GGYTNI-LQSDDLATQNMKYNKNVRNYVFSDAYLEYAYKN---YFEIKAGRY-LSTMPYK 168
Query: 189 TSYTQGVEGFVKYKDTRFRVMYSDARASASS----DWFWYF------------GRYYTSG 232
+ TQG + +YK R S RA A DWF G Y + G
Sbjct: 169 SGQTQGFQISGQYKKARLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHG 228
Query: 233 KALM----VADLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVG 288
+ ++ L Y+ I ++Y Q APG+ I +D+NPNF+ GFR +G
Sbjct: 229 RKVLYGTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIG 288
Query: 289 FFPIF----ATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGD 344
FFPI+ +N + + + P ++GQ RF N + + YK NANG
Sbjct: 289 FFPIYYPWMIVKSNGSPVYKY-DTPATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGW 347
Query: 345 IGIYGDPLGYNIWTNSIYDAEINNIVGADVINGFLYVGSQY--RGFSWKILGRWTDSPRA 402
IG G+P G + +NS+Y + D FL G + + F+WK ++++S +
Sbjct: 348 IGNMGNPSGVIMGSNSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWKFATQYSNSVVS 407
Query: 403 DERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNV 462
E + L Y +Y + + L YYG T KG+ G G PV + P +
Sbjct: 408 WEARAMISLGYKFTEY-LSGSVDLAYYGVYTNKGFKPGENG---PVPKDFPA-------L 456
Query: 463 YSDRSHIMFNIAYGF 477
YSDRS + + F
Sbjct: 457 YSDRSALYTALVASF 471
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.142 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,556,739
Number of Sequences: 1026957
Number of extensions: 16549015
Number of successful extensions: 33808
Number of sequences better than 1.0e-02: 16
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 33735
Number of HSP's gapped (non-prelim): 26
length of query: 480
length of database: 324,149,939
effective HSP length: 125
effective length of query: 355
effective length of database: 195,780,314
effective search space: 69502011470
effective search space used: 69502011470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 99 (42.7 bits)