BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645119|ref|NP_207289.1| hypothetical protein
[Helicobacter pylori 26695]
(278 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207289.1| (NC_000915) hypothetical protein [Helicoba... 558 e-158
ref|NP_223162.1| (NC_000921) putative paralog of HpaA [Heli... 505 e-142
ref|NP_223688.1| (NC_000921) putative PARALOG OF HpaA [Heli... 117 2e-25
ref|NP_207208.1| (NC_000915) putative neuraminyllactose-bin... 117 2e-25
ref|NP_207590.1| (NC_000915) flagellar sheath adhesin hpaA ... 67 3e-10
sp|Q48254|HPA2_HELPY Neuraminyllactose-binding hemagglutini... 66 4e-10
sp|Q48261|HPA3_HELPY NEURAMINYLLACTOSE-BINDING HEMAGGLUTINI... 64 1e-09
gb|AAL86898.1|AF479028_1 (AF479028) adhesin protein HpaA [H... 62 5e-09
sp|Q48264|HPA1_HELPY NEURAMINYLLACTOSE-BINDING HEMAGGLUTINI... 62 9e-09
ref|NP_223451.1| (NC_000921) NEURAMINYLLACTOSE-BINDING HEMA... 61 1e-08
>ref|NP_207289.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64581 hypothetical protein HP0492 - Helicobacter pylori (strain 26695)
gb|AAD07568.1| (AE000564) H. pylori predicted coding region HP0492 [Helicobacter
pylori 26695]
Length = 278
Score = 558 bits (1439), Expect = e-158
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MERSLIFKKVRIYSKMLVALGLSSVLIGCAMNPSAETKTPNDAKNQVQTHERMKTSSEHV 60
MERSLIFKKVRIYSKMLVALGLSSVLIGCAMNPSAETKTPNDAKNQVQTHERMKTSSEHV
Sbjct: 1 MERSLIFKKVRIYSKMLVALGLSSVLIGCAMNPSAETKTPNDAKNQVQTHERMKTSSEHV 60
Query: 61 TPLDFNYPIHIVQAPQNHHVVGILTPRIQVSDNLKPYIDKFQDALINQIQTIFEKRGYQV 120
TPLDFNYPIHIVQAPQNHHVVGILTPRIQVSDNLKPYIDKFQDALINQIQTIFEKRGYQV
Sbjct: 61 TPLDFNYPIHIVQAPQNHHVVGILTPRIQVSDNLKPYIDKFQDALINQIQTIFEKRGYQV 120
Query: 121 LRFQDEKALNAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNLDTLVDQSSGSVWFNF 180
LRFQDEKALNAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNLDTLVDQSSGSVWFNF
Sbjct: 121 LRFQDEKALNAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNLDTLVDQSSGSVWFNF 180
Query: 181 YEPESNRVVHDFAVEVGTFQAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRM 240
YEPESNRVVHDFAVEVGTFQAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRM
Sbjct: 181 YEPESNRVVHDFAVEVGTFQAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRM 240
Query: 241 YAVVMKKAVTELTKENIDKYREAIDRMKGFKSSMPQKK 278
YAVVMKKAVTELTKENIDKYREAIDRMKGFKSSMPQKK
Sbjct: 241 YAVVMKKAVTELTKENIDKYREAIDRMKGFKSSMPQKK 278
>ref|NP_223162.1| (NC_000921) putative paralog of HpaA [Helicobacter pylori J99]
pir||A71930 probable neuraminyllactose-binding hemagglutinin jhp0444 -
Helicobacter pylori (strain J99)
gb|AAD06033.1| (AE001479) putative paralog of HpaA [Helicobacter pylori J99]
Length = 282
Score = 505 bits (1300), Expect = e-142
Identities = 254/279 (91%), Positives = 264/279 (94%), Gaps = 4/279 (1%)
Query: 4 SLIFKKVRIYSKMLVALGLSSVLIGCAMNPSAETKTPNDAKNQ--VQTHERMKTSSEHVT 61
S IFKKVR+YSKMLVALGLSSVLIGCAMNPSAETK PNDAKNQ VQTHERM TSSEHVT
Sbjct: 4 SFIFKKVRVYSKMLVALGLSSVLIGCAMNPSAETKKPNDAKNQQPVQTHERMTTSSEHVT 63
Query: 62 PLDFNYPIHIVQAPQNHHVVGILTPRIQVSDNLKPYIDKFQDALINQIQTIFEKRGYQVL 121
PLDFNYP+HIVQAPQNHHVVGIL PRIQVSDNLKPYIDKFQDALINQIQTIFEKRGYQVL
Sbjct: 64 PLDFNYPVHIVQAPQNHHVVGILMPRIQVSDNLKPYIDKFQDALINQIQTIFEKRGYQVL 123
Query: 122 RFQDEKALNAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNLDTLVDQSSGSVWFNFY 181
RFQDEKALN QDK+KIFSVLDLKGWVGILEDLKMNLKDPN+PNLDTLVDQSSGSVWFNFY
Sbjct: 124 RFQDEKALNVQDKKKIFSVLDLKGWVGILEDLKMNLKDPNSPNLDTLVDQSSGSVWFNFY 183
Query: 182 EPESNRVVHDFAVEVGTFQAMTYTY--KHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNR 239
EPESNRVVHDFAVEVGTFQA+TYTY +N SGG NSS S+IHE L+KN+EDAIHKILNR
Sbjct: 184 EPESNRVVHDFAVEVGTFQAITYTYTSTNNASGGFNSSKSVIHENLDKNREDAIHKILNR 243
Query: 240 MYAVVMKKAVTELTKENIDKYREAIDRMKGFKSSMPQKK 278
MYAVVMKKAVTELTKENI KYR+AIDRMKGFKSSMPQKK
Sbjct: 244 MYAVVMKKAVTELTKENIAKYRDAIDRMKGFKSSMPQKK 282
>ref|NP_223688.1| (NC_000921) putative PARALOG OF HpaA [Helicobacter pylori J99]
pir||E71865 probable neuraminyllactose-binding hemagglutinin jhp0971 -
Helicobacter pylori (strain J99)
gb|AAD06549.1| (AE001526) putative PARALOG OF HpaA [Helicobacter pylori J99]
Length = 249
Score = 117 bits (292), Expect = 2e-25
Identities = 73/251 (29%), Positives = 130/251 (51%), Gaps = 11/251 (4%)
Query: 21 GLSSVLIGCAMNPSAETKTPNDAKNQVQTHERMKTSSEHVTPLDFNYPIHIVQAPQNHHV 80
G ++++G + D Q H M S E L F+YPI Q P+N+H+
Sbjct: 4 GSLAIVLGSLLASGTFYTALADGMPMKQQHNNMGESVE----LHFHYPIKGKQEPKNNHL 59
Query: 81 VGILTPRIQVSDNL-KPYIDKFQDALINQIQTIFEKRGYQVLRFQDEKALNAQDKRKIFS 139
V ++ P+I+ + + + Y +F+ +L Q+ E++GY V +F+D + K K
Sbjct: 60 VVLIDPKIEANKVIPENYQKEFEKSLFLQLSNFLERKGYSVSQFKDVSEIPQDIKEKALL 119
Query: 140 VLDLKGWVGILEDLKMNLKDPNNPNLDTLVDQSSGSVWFNFYEPESNRVVHDFAVEVGTF 199
VL + G V ILED+ +++ + + + ++D SSG + NF EP+S ++H F ++V
Sbjct: 120 VLRMDGNVAILEDI---VEESDALSEEKVIDMSSGYLNLNFVEPKSEDIIHSFGIDVSKI 176
Query: 200 QAM--TYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRMYAVVMKKAVTELTKENI 257
+A+ + NSGG + +H E + + AI KI+N+ Y VM EL+K+++
Sbjct: 177 KAVIERVELRRTNSGGF-VPKTFVHRIKETDHDRAIKKIMNQAYHKVMAHITKELSKKHM 235
Query: 258 DKYREAIDRMK 268
++Y + MK
Sbjct: 236 ERYEKVSSEMK 246
>ref|NP_207208.1| (NC_000915) putative neuraminyllactose-binding hemagglutinin
homolog (hpaA) [Helicobacter pylori 26695]
pir||B64571 probable neuraminyllactose-binding hemagglutinin HP0410 -
Helicobacter pylori (strain 26695)
gb|AAD07478.1| (AE000557) putative neuraminyllactose-binding hemagglutinin homolog
(hpaA) [Helicobacter pylori 26695]
Length = 249
Score = 117 bits (292), Expect = 2e-25
Identities = 73/251 (29%), Positives = 130/251 (51%), Gaps = 11/251 (4%)
Query: 21 GLSSVLIGCAMNPSAETKTPNDAKNQVQTHERMKTSSEHVTPLDFNYPIHIVQAPQNHHV 80
G ++++G + A D Q H S E L F+YPI Q P+N H+
Sbjct: 4 GSLAIVLGSLLASGAFYTALADGMPAKQQHNNTGESVE----LHFHYPIKGKQEPKNSHL 59
Query: 81 VGILTPRIQVSDNL-KPYIDKFQDALINQIQTIFEKRGYQVLRFQDEKALNAQDKRKIFS 139
V ++ P+I+++ + + Y +F+ +L Q+ + E++GY V +F+D + K K
Sbjct: 60 VVLIEPKIEINKVIPESYQKEFEKSLFLQLSSFLERKGYSVSQFKDASEIPQDIKEKALL 119
Query: 140 VLDLKGWVGILEDLKMNLKDPNNPNLDTLVDQSSGSVWFNFYEPESNRVVHDFAVEVGTF 199
VL + G V ILED+ +++ + + + ++D SSG + NF EP+S ++H F ++V
Sbjct: 120 VLRMDGNVAILEDI---VEESDALSEEKVIDMSSGYLNLNFVEPKSEDIIHSFGIDVSKI 176
Query: 200 QAM--TYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRMYAVVMKKAVTELTKENI 257
+A+ + NSGG + +H E + + AI KI+N+ Y VM EL+K+++
Sbjct: 177 KAVIERVELRRTNSGGF-VPKTFVHRIKETDHDQAIRKIMNQAYHKVMVHITKELSKKHM 235
Query: 258 DKYREAIDRMK 268
+ Y + MK
Sbjct: 236 EHYEKVSSEMK 246
>ref|NP_207590.1| (NC_000915) flagellar sheath adhesin hpaA [Helicobacter pylori
26695]
sp|P55969|HPAA_HELPY Neuraminyllactose-binding hemagglutinin precursor
(N-acetylneuraminyllactose-binding fibrillar
hemagglutinin receptor-binding subunit) (NLBH)
(Flagellar sheath adhesin)
pir||E64619 adhesin A - Helicobacter pylori (strains 26695 and 8826)
gb|AAD07844.1| (AE000591) flagellar sheath adhesin hpaA [Helicobacter pylori
26695]
Length = 260
Score = 66.6 bits (161), Expect = 3e-10
Identities = 64/271 (23%), Positives = 125/271 (45%), Gaps = 40/271 (14%)
Query: 13 YSKMLVALGLSSVLIGCAMNPSAETKTPNDAKNQVQTHERMKTSSEHVTPLDFNYPIHIV 72
+ K L+ + ++L+GC+ + ET N+V +SE V LD
Sbjct: 12 WKKCLLGASVVALLVGCSPH-IIET-------NEVALKLNYHPASEKVQALD-------- 55
Query: 73 QAPQNHHVVGILTPRIQVSDNL-KPYIDKFQDALINQIQTIFEKRGYQVLRFQ--DEKAL 129
+ +L P Q SDN+ K Y +KF++ +++ I + +GY+V+ D+ L
Sbjct: 56 ------EKILLLRPAFQYSDNIAKEYENKFKNQTALKVEQILQNQGYKVISVDSSDKDDL 109
Query: 130 NAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNL--DTLVDQS------SGSVWFNFY 181
+ K++ + + + G + + D K ++ + P L T +D+ +G V
Sbjct: 110 SFSQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKVTIL 169
Query: 182 EPESNRVVHDFAVEVGTF---QAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILN 238
EP S + F +++ + T ++SGGL S+ + N DAI LN
Sbjct: 170 EPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTD----NSNDAIKSALN 225
Query: 239 RMYAVVMKKAVTELTKENIDKYREAIDRMKG 269
+++A +M++ +LT++N++ Y++ +KG
Sbjct: 226 KIFANIMQEIDKKLTQKNLESYQKDAKELKG 256
>sp|Q48254|HPA2_HELPY Neuraminyllactose-binding hemagglutinin precursor
(N-acetylneuraminyllactose-binding fibrillar
hemagglutinin receptor-binding subunit) (NLBH)
(Flagellar sheath adhesin)
gb|AAA79096.1| (U35455) neuraminyllactose-binding hemagglutinin [Helicobacter
pylori]
prf||2123342A neuraminyllactose-binding hemagglutinin [Helicobacter pylori]
Length = 260
Score = 66.2 bits (160), Expect = 4e-10
Identities = 62/271 (22%), Positives = 124/271 (44%), Gaps = 40/271 (14%)
Query: 13 YSKMLVALGLSSVLIGCAMNPSAETKTPNDAKNQVQTHERMKTSSEHVTPLDFNYPIHIV 72
+ K L+ + ++L+GC+ + ET N+V +SE V LD
Sbjct: 12 WKKCLLGASVGALLVGCSPH-IIET-------NEVALKLNYHPASEKVQALD-------- 55
Query: 73 QAPQNHHVVGILTPRIQVSDNL-KPYIDKFQDALINQIQTIFEKRGYQVLRFQ--DEKAL 129
+ +L P Q SDN+ K Y +KF++ + +++ I + +GY+V+ D+
Sbjct: 56 ------EKILLLRPAFQYSDNIAKEYENKFKNQTVLKVEQILQNQGYKVINVDSSDKDDF 109
Query: 130 NAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNL--DTLVDQS------SGSVWFNFY 181
+ K++ + + + G + + D K ++ + P L T +D+ +G V
Sbjct: 110 SFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKVTIL 169
Query: 182 EPESNRVVHDFAVEVGTF---QAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILN 238
EP S + F +++ + T ++SGGL S+ + N DAI LN
Sbjct: 170 EPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTD----NSNDAIKSALN 225
Query: 239 RMYAVVMKKAVTELTKENIDKYREAIDRMKG 269
+++ +M++ +LT++N++ Y++ +KG
Sbjct: 226 KIFGSIMQEIDKKLTQKNLESYQKDAKELKG 256
>sp|Q48261|HPA3_HELPY NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PRECURSOR
(N-ACETYLNEURAMINYLLACTOSE-BINDING FIBRILLAR
HEMAGGLUTININ RECEPTOR-BINDING SUBUNIT) (NLBH)
(FLAGELLAR SHEATH ADHESIN)
emb|CAA63246.1| (X92502) flagellar sheath adhesin [Helicobacter pylori]
Length = 260
Score = 64.3 bits (155), Expect = 1e-09
Identities = 62/271 (22%), Positives = 124/271 (44%), Gaps = 40/271 (14%)
Query: 13 YSKMLVALGLSSVLIGCAMNPSAETKTPNDAKNQVQTHERMKTSSEHVTPLDFNYPIHIV 72
+ K L+ + ++L+GC+ + ET N+V +SE V LD
Sbjct: 12 WKKCLLGASVVALLVGCSPH-IIET-------NEVALKLNYHPASEKVQALD-------- 55
Query: 73 QAPQNHHVVGILTPRIQVSDNL-KPYIDKFQDALINQIQTIFEKRGYQVLRFQ--DEKAL 129
+ +L P Q SDN+ K Y +KF++ +++ I + +GY+V+ D+
Sbjct: 56 ------EKILLLRPAFQYSDNIAKEYENKFKNQTALKVEQILQNQGYKVISVDSSDKDDF 109
Query: 130 NAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNL--DTLVDQS------SGSVWFNFY 181
+ K++ + + + G + + D K ++ + P L T +D+ +G +
Sbjct: 110 SFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFIKVTIL 169
Query: 182 EPESNRVVHDFAVEVGTF---QAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILN 238
EP S + F +++ + T ++SGGL S+ + N DAI LN
Sbjct: 170 EPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTD----NSNDAIKSALN 225
Query: 239 RMYAVVMKKAVTELTKENIDKYREAIDRMKG 269
+++A +M++ +LT++N++ Y++ +KG
Sbjct: 226 KIFANIMQEIDKKLTQKNLESYQKDAKELKG 256
>gb|AAL86898.1|AF479028_1 (AF479028) adhesin protein HpaA [Helicobacter pylori]
Length = 260
Score = 62.4 bits (150), Expect = 5e-09
Identities = 61/270 (22%), Positives = 123/270 (44%), Gaps = 40/270 (14%)
Query: 13 YSKMLVALGLSSVLIGCAMNPSAETKTPNDAKNQVQTHERMKTSSEHVTPLDFNYPIHIV 72
+ K L+ + ++L+GC+ + ET N+V +SE V LD
Sbjct: 12 WKKCLLGASVVALLVGCSPH-IIET-------NEVALKLNYHPASEKVQALD-------- 55
Query: 73 QAPQNHHVVGILTPRIQVSDNL-KPYIDKFQDALINQIQTIFEKRGYQVLRFQ--DEKAL 129
+ +L P Q SDN+ K Y +KF++ +++ I + +GY+V+ D+
Sbjct: 56 ------EKILLLRPAFQYSDNIAKEYENKFKNQTALKVEQILQNQGYKVINVDSSDKDDF 109
Query: 130 NAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNL--DTLVDQS------SGSVWFNFY 181
+ K++ + + + G + + D K ++ + P L T +D+ +G +
Sbjct: 110 SFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFIKVTIL 169
Query: 182 EPESNRVVHDFAVEVGTF---QAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILN 238
EP S + F +++ + T ++SGGL S+ + N DAI LN
Sbjct: 170 EPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTD----NSNDAIKSALN 225
Query: 239 RMYAVVMKKAVTELTKENIDKYREAIDRMK 268
+++A +M++ +LT++N++ Y++ +K
Sbjct: 226 KIFANIMQEIDKKLTQKNLESYQKDAKELK 255
>sp|Q48264|HPA1_HELPY NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PRECURSOR
(N-ACETYLNEURAMINYLLACTOSE-BINDING FIBRILLAR
HEMAGGLUTININ RECEPTOR-BINDING SUBUNIT) (NLBH)
(FLAGELLAR SHEATH ADHESIN)
emb|CAA43773.1| (X61574) HpaA [Helicobacter pylori]
Length = 260
Score = 61.6 bits (148), Expect = 9e-09
Identities = 62/270 (22%), Positives = 122/270 (44%), Gaps = 40/270 (14%)
Query: 13 YSKMLVALGLSSVLIGCAMNPSAETKTPNDAKNQVQTHERMKTSSEHVTPLDFNYPIHIV 72
+ K L+ + ++L+GC+ + ET N+V +SE V LD
Sbjct: 12 WKKCLLGTSVVALLVGCSPH-IIET-------NEVALKLNYHPASEKVQALD-------- 55
Query: 73 QAPQNHHVVGILTPRIQVSDNL-KPYIDKFQDALINQIQTIFEKRGYQVLRFQ--DEKAL 129
+ +L P Q SDN+ K Y +KF++ +++ I + +GY+V+ D+
Sbjct: 56 ------EKILLLKPAFQYSDNIAKEYENKFKNQTTLKVEEILQNQGYKVINVDSSDKDDF 109
Query: 130 NAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNL--DTLVDQS------SGSVWFNFY 181
+ K++ + + + G + + D K ++ + P L T +D+ +G V
Sbjct: 110 SFAQKKEGYLAVAMIGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKVTIL 169
Query: 182 EPESNRVVHDFAVEVGTF---QAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILN 238
EP S + F +++ + T ++SGGL S+ + N DAI LN
Sbjct: 170 EPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTD----NSNDAIKSALN 225
Query: 239 RMYAVVMKKAVTELTKENIDKYREAIDRMK 268
+++A +M++ +LT+ N++ Y++ +K
Sbjct: 226 KIFASIMQEMDKKLTQRNLESYQKDAKELK 255
>ref|NP_223451.1| (NC_000921) NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PRECURSOR
[Helicobacter pylori J99]
sp|Q9ZL47|HPAA_HELPJ Neuraminyllactose-binding hemagglutinin precursor
(N-acetylneuraminyllactose-binding fibrillar
hemagglutinin receptor-binding subunit) (NLBH)
(Flagellar sheath adhesin)
pir||C71896 neuraminyllactose-binding hemagglutinin precursor - Helicobacter
pylori (strain J99)
gb|AAD06306.1| (AE001504) NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PRECURSOR
[Helicobacter pylori J99]
Length = 260
Score = 61.2 bits (147), Expect = 1e-08
Identities = 61/270 (22%), Positives = 121/270 (44%), Gaps = 40/270 (14%)
Query: 13 YSKMLVALGLSSVLIGCAMNPSAETKTPNDAKNQVQTHERMKTSSEHVTPLDFNYPIHIV 72
+ K + + ++L+GC+ + ET N+V +SE V LD
Sbjct: 12 WKKCFLGASVVALLVGCSPH-IIET-------NEVALKLNYHPASEKVQALD-------- 55
Query: 73 QAPQNHHVVGILTPRIQVSDNL-KPYIDKFQDALINQIQTIFEKRGYQVLRFQ--DEKAL 129
+ +L P Q SDN+ K Y +KF++ +++ I + +GY+V+ D+
Sbjct: 56 ------EKILLLRPAFQYSDNIAKEYENKFKNQTTLKVEEILQNQGYKVINVDSSDKDDF 109
Query: 130 NAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNL--DTLVDQS------SGSVWFNFY 181
+ K++ + + + G + + D K ++ + P L T +D+ +G V
Sbjct: 110 SFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKVTIL 169
Query: 182 EPESNRVVHDFAVEVGTF---QAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILN 238
EP S + F +++ + T ++SGGL S+ + N DAI LN
Sbjct: 170 EPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTD----NSNDAIKSALN 225
Query: 239 RMYAVVMKKAVTELTKENIDKYREAIDRMK 268
+++A +M++ +LT+ N++ Y++ +K
Sbjct: 226 KIFASIMQEMDKKLTQRNLESYQKDAKELK 255
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,028,731
Number of Sequences: 1026957
Number of extensions: 6919689
Number of successful extensions: 19884
Number of sequences better than 1.0e-02: 10
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 19868
Number of HSP's gapped (non-prelim): 10
length of query: 278
length of database: 324,149,939
effective HSP length: 119
effective length of query: 159
effective length of database: 201,942,056
effective search space: 32108786904
effective search space used: 32108786904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 96 (41.6 bits)