BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645122|ref|NP_207292.1| hypothetical protein
[Helicobacter pylori 26695]
(86 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207292.1| (NC_000915) hypothetical protein [Helicoba... 175 1e-43
ref|NP_223165.1| (NC_000921) putative [Helicobacter pylori ... 153 4e-37
ref|NP_281447.1| (NC_002163) hypothetical protein Cj0253 [C... 50 5e-06
>ref|NP_207292.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
sp|O25237|Y495_HELPY Hypothetical protein HP0495
pir||G64581 hypothetical protein HP0495 - Helicobacter pylori (strain 26695)
gb|AAD07569.1| (AE000564) H. pylori predicted coding region HP0495 [Helicobacter
pylori 26695]
Length = 86
Score = 175 bits (443), Expect = 1e-43
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MPSDSKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVS 60
MPSDSKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVS
Sbjct: 1 MPSDSKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVS 60
Query: 61 MEVSNESERNEIFQKISQLDKVVQTL 86
MEVSNESERNEIFQKISQLDKVVQTL
Sbjct: 61 MEVSNESERNEIFQKISQLDKVVQTL 86
>ref|NP_223165.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZLX9|Y495_HELPJ Hypothetical protein JHP0447
pir||D71930 hypothetical protein jhp0447 - Helicobacter pylori (strain J99)
gb|AAD06025.1| (AE001479) putative [Helicobacter pylori J99]
Length = 86
Score = 153 bits (386), Expect = 4e-37
Identities = 74/86 (86%), Positives = 78/86 (90%)
Query: 1 MPSDSKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVS 60
MPSD +KPTIIYPC+WDYRVIMTT DTS LKELLETYQRPFKLE KNTSKNAKFYSFNVS
Sbjct: 1 MPSDLEKPTIIYPCVWDYRVIMTTNDTSVLKELLETYQRPFKLELKNTSKNAKFYSFNVS 60
Query: 61 MEVSNESERNEIFQKISQLDKVVQTL 86
MEVSNE+ERNEIFQKISQL+ V L
Sbjct: 61 MEVSNEAERNEIFQKISQLEVVAHAL 86
>ref|NP_281447.1| (NC_002163) hypothetical protein Cj0253 [Campylobacter jejuni]
sp|Q9PIP2|Y253_CAMJE Hypothetical protein Cj0253
pir||D81443 hypothetical protein Cj0253 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72721.1| (AL139074) hypothetical protein Cj0253 [Campylobacter jejuni]
Length = 87
Score = 50.1 bits (118), Expect = 5e-06
Identities = 27/80 (33%), Positives = 46/80 (56%), Gaps = 4/80 (5%)
Query: 6 KKPTIIYPCLWDYRVIMTT--KDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEV 63
K+P I YP WDY+VI K + +E+L QR +K + N+S + K+ S+ +++ V
Sbjct: 9 KEPQINYPTFWDYKVIFEVHVKASEIFEEILG--QREYKFKHSNSSASGKYQSYLLNVYV 66
Query: 64 SNESERNEIFQKISQLDKVV 83
++ +R +IF K+ K V
Sbjct: 67 DSKKDRLDIFDKLKAKAKFV 86
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.315 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,093,628
Number of Sequences: 1026957
Number of extensions: 1380097
Number of successful extensions: 4682
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4679
Number of HSP's gapped (non-prelim): 3
length of query: 86
length of database: 324,149,939
effective HSP length: 62
effective length of query: 24
effective length of database: 260,478,605
effective search space: 6251486520
effective search space used: 6251486520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)