BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645123|ref|NP_207293.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(133 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207293.1| (NC_000915) conserved hypothetical protein... 268 1e-71
gb|AAB39716.1| (U75328) hypothetical protein [Helicobacter ... 267 1e-71
ref|NP_223166.1| (NC_000921) putative [Helicobacter pylori ... 265 5e-71
ref|NP_282117.1| (NC_002163) hypothetical protein Cj0965c [... 97 2e-20
ref|NP_231474.1| (NC_002505) conserved hypothetical protein... 80 3e-15
ref|NP_455300.1| (NC_003198) conserved hypothetical protein... 80 4e-15
emb|CAB50777.1| (X74218) hypothetical protein [Pseudomonas ... 77 3e-14
ref|NP_286464.1| (NC_002655) orf, hypothetical protein [Esc... 77 3e-14
ref|NP_459729.1| (NC_003197) putative esterase [Salmonella ... 77 3e-14
ref|NP_245908.1| (NC_002663) unknown [Pasteurella multocida... 75 1e-13
ref|NP_518852.1| (NC_003295) PUTATIVE THIOESTERASE PROTEIN ... 75 2e-13
ref|NP_438547.1| (NC_000907) conserved hypothetical protein... 75 2e-13
ref|NP_539252.1| (NC_003317) 4-hydroxybenzoyl-CoA thioester... 70 3e-12
ref|NP_638369.1| (NC_003902) conserved hypothetical protein... 67 3e-11
ref|NP_356902.1| (NC_003063) AGR_L_2234p [Agrobacterium tum... 67 4e-11
ref|NP_404733.1| (NC_003143) conserved hypothetical protein... 67 4e-11
emb|CAC82705.1| (AJ297885) YbgC protein [Erwinia chrysanthemi] 67 4e-11
ref|NP_643454.1| (NC_003919) conserved hypothetical protein... 65 1e-10
ref|NP_249659.1| (NC_002516) conserved hypothetical protein... 65 1e-10
ref|NP_299187.1| (NC_002488) conserved hypothetical protein... 64 3e-10
ref|NP_386850.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 63 6e-10
ref|NP_422028.1| (NC_002696) conserved hypothetical protein... 62 8e-10
gb|AAD49752.1| (U39558) orf1 [Pseudomonas aeruginosa] 62 1e-09
ref|NP_104902.1| (NC_002678) hypothetical protein [Mesorhiz... 60 3e-09
dbj|BAA89381.1| (AB025342) ORF7 [Moritella marina] 53 7e-07
gb|AAL01059.1|AF409100_6 (AF409100) unknown [Photobacterium... 49 7e-06
gb|AAF16410.1|AF051771_6 (AF051771) 4-hydroxybenzoyl CoA th... 43 5e-04
ref|NP_214031.1| (NC_000918) hypothetical protein [Aquifex ... 43 7e-04
gb|AAK48914.1|AF358662_1 (AF358662) unknown [Brucella melit... 42 0.001
ref|NP_623402.1| (NC_003869) predicted thioesterase [Thermo... 42 0.001
ref|NP_346912.1| (NC_003030) Predicted esterase [Clostridiu... 42 0.002
pdb|1LO7|A Chain A, X-Ray Structure Of 4-Hydroxybenzoyl Coa... 42 0.002
ref|NP_243154.1| (NC_002570) BH2288~unknown conserved prote... 41 0.002
sp|P56653|4HBT_PSESP 4-HYDROXYBENZOYL-COA THIOESTERASE >gi|... 40 0.003
pdb|1LO9|A Chain A, X-Ray Crystal Structure Of 4-Hydroxyben... 40 0.006
ref|NP_442358.1| (NC_000911) unknown protein [Synechocystis... 39 0.008
pir||I39564 hypothetical protein 6 gbd-region [imported] - ... 39 0.010
ref|NP_242865.1| (NC_002570) 4-hydroxybenzoyl-CoA thioester... 39 0.010
>ref|NP_207293.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|P94842|Y496_HELPY Hypothetical protein HP0496
pir||H64581 conserved hypothetical protein HP0496 - Helicobacter pylori
(strain 26695)
gb|AAD07561.1| (AE000564) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 133
Score = 268 bits (684), Expect = 1e-71
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA 60
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA
Sbjct: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA 60
Query: 61 SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI 120
SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI
Sbjct: 61 SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI 120
Query: 121 AIPKLFKELLNAI 133
AIPKLFKELLNAI
Sbjct: 121 AIPKLFKELLNAI 133
>gb|AAB39716.1| (U75328) hypothetical protein [Helicobacter pylori]
Length = 133
Score = 267 bits (683), Expect = 1e-71
Identities = 132/133 (99%), Positives = 133/133 (99%)
Query: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA 60
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA
Sbjct: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA 60
Query: 61 SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI 120
SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI
Sbjct: 61 SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI 120
Query: 121 AIPKLFKELLNAI 133
AIPKLFKELLNA+
Sbjct: 121 AIPKLFKELLNAV 133
>ref|NP_223166.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZLX8|Y496_HELPJ Hypothetical protein JHP0448
pir||E71930 hypothetical protein jhp0448 - Helicobacter pylori (strain J99)
gb|AAD06026.1| (AE001479) putative [Helicobacter pylori J99]
Length = 133
Score = 265 bits (678), Expect = 5e-71
Identities = 131/133 (98%), Positives = 133/133 (99%)
Query: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA 60
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA
Sbjct: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA 60
Query: 61 SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI 120
SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI
Sbjct: 61 SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI 120
Query: 121 AIPKLFKELLNAI 133
AIPKLFKELL+A+
Sbjct: 121 AIPKLFKELLSAV 133
>ref|NP_282117.1| (NC_002163) hypothetical protein Cj0965c [Campylobacter jejuni]
pir||D81371 hypothetical protein Cj0965c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73222.1| (AL139076) hypothetical protein Cj0965c [Campylobacter jejuni]
Length = 124
Score = 97.4 bits (241), Expect = 2e-20
Identities = 53/132 (40%), Positives = 78/132 (58%), Gaps = 12/132 (9%)
Query: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNV-LPENEEGVFVIRSIKADFFTP 59
M+ RVYYEDTD+ GVVYH+NYLK+CERARSE FF + V + + +G F++ +F P
Sbjct: 1 MKMRVYYEDTDAGGVVYHSNYLKFCERARSEIFFNKKVDIFDASKGHFLLAKANCNFLKP 60
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFV--NRSTY 117
A LG ++EI+T+I E++ V + QEIY +F E+ F+ +
Sbjct: 61 AKLGDMIEIKTKILEVKNASVEILQEIY---------KDEILLFKMELTLAFIKNEKPAR 111
Query: 118 SPIAIPKLFKEL 129
+ + KLF+EL
Sbjct: 112 MDMQLKKLFEEL 123
>ref|NP_231474.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||D82152 conserved hypothetical protein VC1840 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94988.1| (AE004259) conserved hypothetical protein [Vibrio cholerae]
Length = 155
Score = 80.5 bits (197), Expect = 3e-15
Identities = 49/130 (37%), Positives = 72/130 (54%), Gaps = 11/130 (8%)
Query: 5 VYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPEN--EEGV-FVIRSIKADFFTPAS 61
VYYEDTD+ GVVYHANYLK+ ERAR+E V ++ E+G+ FV+R ++ DF A
Sbjct: 30 VYYEDTDAGGVVYHANYLKFFERARTEMLRAVGVHQQSLLEQGIGFVVRHMEIDFLKGAK 89
Query: 62 LGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPIA 121
L LE+ T++ EL+K + QE+ + L K +K ++ + P A
Sbjct: 90 LDDHLEVVTRVSELKKASLTFCQELVNPEGTVLSKAK--------VKVACIDNESMRPRA 141
Query: 122 IPKLFKELLN 131
+P+L LN
Sbjct: 142 LPQLISLELN 151
>ref|NP_455300.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD05206.1| (AL627268) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 134
Score = 80.1 bits (196), Expect = 4e-15
Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 13/125 (10%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF----FKQNVLPENEEGVFVIRSIKADFFTP 59
RVYYEDTD+ GVVYHA+Y+ + ERAR+E F Q VL E FV+R + +++ P
Sbjct: 11 RVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQVLLA-ERVAFVVRKMTLEYYAP 69
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSP 119
A L +LE++T+I +R +V Q I +N L + VF +K P
Sbjct: 70 ARLDDMLEVQTEITSMRGTALVFTQRIVNAENTLLNEAEVLIVFVDPLKM--------KP 121
Query: 120 IAIPK 124
A+PK
Sbjct: 122 RALPK 126
>emb|CAB50777.1| (X74218) hypothetical protein [Pseudomonas putida]
Length = 150
Score = 77.4 bits (189), Expect = 3e-14
Identities = 49/135 (36%), Positives = 73/135 (53%), Gaps = 12/135 (8%)
Query: 2 RCRVYYEDTDSEGVVYHANYLKYCERARSE----FFFKQNVLPENEEGVFVIRSIKADFF 57
RCRVYYEDTD+ GVVY+ NYLK+ ERAR+E F Q+ L E + +FV+ S +A +
Sbjct: 13 RCRVYYEDTDAGGVVYYVNYLKFMERARTERLRHLGFSQSQLAE-DNLLFVVHSSEARYH 71
Query: 58 TPASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTY 117
PA L L + Q+ EL + + Q+++ ++ +L F V A V T+
Sbjct: 72 APARLDDELRVTAQVLELNRASLRFVQQVWREKDETLLCEGQFLVAA-------VRADTF 124
Query: 118 SPIAIPKLFKELLNA 132
P A+P ++ A
Sbjct: 125 KPRALPPQLRDAFAA 139
>ref|NP_286464.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308798.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_415264.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P08999|YBGC_ECOLI Protein ybgC
pir||WMEC15 ybgC protein - Escherichia coli
gb|AAA83918.1| (M16489) ORF 1; putative [Escherichia coli]
gb|AAC73830.1| (AE000177) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35402.1| (D90713) 15.5k protein (tolAB operon 5' region). [Escherichia coli]
gb|AAG55072.1|AE005252_8 (AE005252) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34194.1| (AP002553) hypothetical protein [Escherichia coli O157:H7]
Length = 134
Score = 77.0 bits (188), Expect = 3e-14
Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF----FKQNVLPENEEGVFVIRSIKADFFTP 59
RVYYEDTD+ GVVYHA+Y+ + ERAR+E F Q L E FV+R + +++ P
Sbjct: 11 RVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMA-ERVAFVVRKMTVEYYAP 69
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSP 119
A L +LEI+T+I +R +V Q I +N L + V +K P
Sbjct: 70 ARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKM--------KP 121
Query: 120 IAIPK 124
A+PK
Sbjct: 122 RALPK 126
>ref|NP_459729.1| (NC_003197) putative esterase [Salmonella typhimurium LT2]
gb|AAL19688.1| (AE008730) putative esterase [Salmonella typhimurium LT2]
Length = 134
Score = 77.0 bits (188), Expect = 3e-14
Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 13/125 (10%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF----FKQNVLPENEEGVFVIRSIKADFFTP 59
RVYYEDTD+ GVVYHA+Y+ + ERAR+E F Q VL E FV+R + +++ P
Sbjct: 11 RVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQVLLA-ERVAFVVRKMTLEYYAP 69
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSP 119
A L +LE++T+I +R +V Q I +N L + V +K P
Sbjct: 70 ARLDDMLEVQTEITSMRGTALVFTQRIVNAENTLLNEAEVLIVCVDPLKM--------KP 121
Query: 120 IAIPK 124
A+PK
Sbjct: 122 RALPK 126
>ref|NP_245908.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03055.1| (AE006136) unknown [Pasteurella multocida]
Length = 136
Score = 75.5 bits (184), Expect = 1e-13
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF----FKQNVLPENEEGVFVIRSIKADFFTP 59
RVYYEDTD+ GVVYHA YL + ERAR+E+ F Q+ L ++ FV++++ D+ P
Sbjct: 11 RVYYEDTDAGGVVYHARYLHFFERARTEYLRCAGFSQHTLLNEQQLAFVVKTMNIDYRYP 70
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSP 119
A L +L + T + EL+ + Q + + E + +K V+ P
Sbjct: 71 AKLDNLLIVETLVTELKGASIFFTQRLKKEEQILCE---------ATVKVACVDLGKMKP 121
Query: 120 IAIPKLFKELL 130
IAIP K +L
Sbjct: 122 IAIPAEMKAVL 132
>ref|NP_518852.1| (NC_003295) PUTATIVE THIOESTERASE PROTEIN [Ralstonia solanacearum]
emb|CAD14261.1| (AL646060) PUTATIVE THIOESTERASE PROTEIN [Ralstonia solanacearum]
Length = 134
Score = 74.7 bits (182), Expect = 2e-13
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 13/124 (10%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF----FKQNVLPENEEGVFVIRSIKADFFTP 59
RVY+EDTD+ GVV++ANYLK+ ERAR+E+ Q L + +FV+RS D+ P
Sbjct: 9 RVYWEDTDAGGVVFYANYLKFFERARTEWLRALGVDQQALADTTGAIFVVRSTAVDYRAP 68
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSP 119
A L +L++R++++ + V QE + + + I+ G V+R T+ P
Sbjct: 69 ARLDDLLQVRSRMERVGPASVQFAQESW---------RGDILLVSGTIRVGCVDRLTFRP 119
Query: 120 IAIP 123
IP
Sbjct: 120 TPIP 123
>ref|NP_438547.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44679|YBGC_HAEIN Hypothetical protein HI0386
pir||H64150 conserved hypothetical protein HI0386 - Haemophilus influenzae
(strain Rd KW20)
gb|AAC22044.1| (U32722) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 136
Score = 74.7 bits (182), Expect = 2e-13
Identities = 42/128 (32%), Positives = 70/128 (53%), Gaps = 13/128 (10%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF----FKQNVLPENEEGVFVIRSIKADFFTP 59
RVYYEDTD+ GVVYHA YL + ERAR+E+ F Q L E ++ FV++++ D+
Sbjct: 11 RVYYEDTDAGGVVYHARYLHFFERARTEYLRTLNFTQQTLLEEQQLAFVVKTLAIDYCVA 70
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSP 119
A L +L + T++ E++ ++ Q + ++N + + + +K V+ P
Sbjct: 71 AKLDDLLMVETEVSEVKGATILFEQRL--MRNTLM-------LSKATVKVACVDLGKMKP 121
Query: 120 IAIPKLFK 127
+A PK K
Sbjct: 122 VAFPKEVK 129
>ref|NP_539252.1| (NC_003317) 4-hydroxybenzoyl-CoA thioesterase family active site
[Brucella melitensis]
gb|AAL51516.1| (AE009475) 4-hydroxybenzoyl-CoA thioesterase family active site
[Brucella melitensis]
Length = 149
Score = 70.5 bits (171), Expect = 3e-12
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNV----LPE---NEEGVFVIRSIKADF 56
R+YY DTD G VYH YL++ ER R++F QNV L E EE V+V+R ++ D+
Sbjct: 23 RIYYADTDFSGFVYHGRYLEFYERGRTDFLRLQNVHHIKLAEGSLGEEMVWVVRHMEIDY 82
Query: 57 FTPASLGQVLEIRTQIKELRKVFVVLFQEIYC 88
PA + ++ I T++ E+R V++ Q+I C
Sbjct: 83 KAPARMDDLILIETRVSEIRGARVIMAQKITC 114
>ref|NP_638369.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42293.1| (AE012415) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 152
Score = 67.4 bits (163), Expect = 3e-11
Identities = 33/87 (37%), Positives = 51/87 (57%), Gaps = 4/87 (4%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF----FKQNVLPENEEGVFVIRSIKADFFTP 59
RVY+EDTD+ GVVYHA Y+ + ERAR+E+ F Q L + + VF +RS++ DF P
Sbjct: 21 RVYWEDTDAGGVVYHARYVAFMERARTEWMRALGFGQERLRQQHDLVFAVRSMQLDFLKP 80
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEI 86
A L L + + ++ ++ Q +
Sbjct: 81 ARLDDALSVSAVLTRCKRASLIFAQSV 107
>ref|NP_356902.1| (NC_003063) AGR_L_2234p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534212.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK89687.1| (AE008311) AGR_L_2234p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44528.1| (AE009303) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 146
Score = 66.6 bits (161), Expect = 4e-11
Identities = 38/89 (42%), Positives = 54/89 (59%), Gaps = 6/89 (6%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF-----FKQNVLPENEEG-VFVIRSIKADFF 57
RVYYEDTD G+VYHA YL + ER R+++ + +L +EEG VFV+ ++ DF
Sbjct: 22 RVYYEDTDFSGLVYHARYLHFLERGRTDYLRCLGCEQSALLTADEEGLVFVVHRMEIDFK 81
Query: 58 TPASLGQVLEIRTQIKELRKVFVVLFQEI 86
TPA + VL I T ++ +VL QE+
Sbjct: 82 TPARMDDVLTITTVTEKAGGAKMVLNQEV 110
>ref|NP_404733.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC89963.1| (AJ414146) conserved hypothetical protein [Yersinia pestis]
Length = 133
Score = 66.6 bits (161), Expect = 4e-11
Identities = 37/124 (29%), Positives = 65/124 (51%), Gaps = 11/124 (8%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPE---NEEGVFVIRSIKADFFTPA 60
RVY+EDTD+ G+VYHA Y+ + ERAR+E ++N + +E F +RS+ ++ PA
Sbjct: 11 RVYFEDTDAGGMVYHARYVAFYERARTEMLRQRNFHQQQLLSEHVAFAVRSMTVEYLAPA 70
Query: 61 SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI 120
L +LE+++++ +R + Q I L ++E+ ++ P
Sbjct: 71 RLDDMLEVQSEVTAMRGASLTFAQRILDSHGNLLS--------SAEVLIACIDPHQMKPR 122
Query: 121 AIPK 124
A+PK
Sbjct: 123 ALPK 126
>emb|CAC82705.1| (AJ297885) YbgC protein [Erwinia chrysanthemi]
Length = 134
Score = 66.6 bits (161), Expect = 4e-11
Identities = 42/125 (33%), Positives = 63/125 (49%), Gaps = 13/125 (10%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF----FKQNVLPENEEGVFVIRSIKADFFTP 59
RVYYEDTD+ GVVYHA Y+ + ERAR+E Q VL +E F +R + ++ P
Sbjct: 11 RVYYEDTDAGGVVYHARYVAFYERARTEMLRAHDCHQRVL-MSEHVAFAVRKMAVEYLAP 69
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSP 119
A L +LE++++I +R + Q I L +E+ ++ P
Sbjct: 70 ARLDDLLEVQSEIVVVRGASLTFVQRILDSHGTLLS--------HAEVLVACIDSFQMKP 121
Query: 120 IAIPK 124
IA+PK
Sbjct: 122 IALPK 126
>ref|NP_643454.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37990.1| (AE011958) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 152
Score = 65.5 bits (158), Expect = 1e-10
Identities = 32/87 (36%), Positives = 51/87 (57%), Gaps = 4/87 (4%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF----FKQNVLPENEEGVFVIRSIKADFFTP 59
RVY+EDTD+ GVVYHA Y+ + ERAR+E+ + Q + + + VF +RS++ DF P
Sbjct: 21 RVYWEDTDAGGVVYHARYVAFMERARTEWMRALGYGQERMRQEHDLVFAVRSMQLDFLKP 80
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEI 86
A L L + + R+ ++ Q +
Sbjct: 81 ARLDDALSVSAVLLRCRRASLLFAQSV 107
>ref|NP_249659.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||B83525 conserved hypothetical protein PA0968 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04357.1|AE004530_10 (AE004530) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 148
Score = 65.1 bits (157), Expect = 1e-10
Identities = 44/130 (33%), Positives = 67/130 (50%), Gaps = 12/130 (9%)
Query: 2 RCRVYYEDTDSEGVVYHANYLKYCERARSE----FFFKQNVLPENEEGVFVIRSIKADFF 57
R RVYYEDTD+ G+VY+ NYLK+ ERAR+E F Q+ L + +FV+ S +A +
Sbjct: 13 RFRVYYEDTDAGGIVYYVNYLKFMERARTERLRALGFAQSQL-VGDNLLFVVHSAEARYH 71
Query: 58 TPASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTY 117
PA L L + +++EL + + Q++ ++ L F V V T
Sbjct: 72 APAKLDDELLVSAEVEELNRASLKFRQQVRRASDSVLLCEGRFLV-------ACVRADTL 124
Query: 118 SPIAIPKLFK 127
P AIP+ +
Sbjct: 125 KPRAIPETLR 134
>ref|NP_299187.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||D82623 conserved hypothetical protein XF1901 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84707.1|AE004010_4 (AE004010) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 148
Score = 63.9 bits (154), Expect = 3e-10
Identities = 32/87 (36%), Positives = 52/87 (58%), Gaps = 4/87 (4%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF----FKQNVLPENEEGVFVIRSIKADFFTP 59
RVY+EDT ++GVVYHA Y+ + ERAR+E+ + Q + + + VF +R+++ DF P
Sbjct: 21 RVYWEDTGADGVVYHARYVAFIERARTEWMRTMGYGQERMRQEYDLVFAVRAMRMDFLRP 80
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEI 86
A L LE+ + + ++L Q I
Sbjct: 81 AHLDDALEVSVVLIRCKHASLLLAQSI 107
>ref|NP_386850.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC47323.1| (AL591791) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 151
Score = 62.8 bits (151), Expect = 6e-10
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNV------LPENEEG-VFVIRSIKADF 56
RVYYEDTD GVVYHA YL + ERAR+++ V + + EG VFV+ ++ DF
Sbjct: 20 RVYYEDTDFSGVVYHARYLHFMERARTDYLRLLGVEQASLAIEGDVEGLVFVVHRMEIDF 79
Query: 57 FTPASLGQVLEIRTQIKELRKVFVVLFQEI 86
PA + VL I T ++ ++L Q+I
Sbjct: 80 KAPARMDDVLTIETATEKAGGAKMILQQQI 109
>ref|NP_422028.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK25196.1| (AE005987) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 147
Score = 62.4 bits (150), Expect = 8e-10
Identities = 36/87 (41%), Positives = 49/87 (55%), Gaps = 5/87 (5%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF----FKQNVLPENEEGVFVIRSIKADFFTP 59
R+YYEDTD G+VYHANYL+Y ER RS+FF L + + G VIR ++ DF
Sbjct: 19 RIYYEDTDFTGIVYHANYLRYLERGRSDFFRAVGISHTELAKQDTGFAVIR-MELDFKRA 77
Query: 60 ASLGQVLEIRTQIKELRKVFVVLFQEI 86
A + L +RT + V + + Q I
Sbjct: 78 ARIDDALLVRTLFERAEGVRLHVRQTI 104
>gb|AAD49752.1| (U39558) orf1 [Pseudomonas aeruginosa]
Length = 148
Score = 62.0 bits (149), Expect = 1e-09
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 2 RCRVYYEDTDSEGVVYHANYLKYCERARSE----FFFKQNVLPENEEGVFVIRSIKADFF 57
R RVYYEDTD+ G+VY+ NYLK+ ERA +E F Q+ L + +FV+ S +A +
Sbjct: 13 RFRVYYEDTDAGGIVYYVNYLKFMERAWTERLRALGFAQSQL-VGDNLLFVVHSAEARYH 71
Query: 58 TPASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTY 117
PA L L + +++EL + + Q++ ++ L F V V T
Sbjct: 72 APAKLDDELLVSAEVEELNRASLKFRQQVRRASDSVLLCEGRFLV-------ACVRADTL 124
Query: 118 SPIAIPKLFK 127
P AIP+ +
Sbjct: 125 KPRAIPETLR 134
>ref|NP_104902.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB50688.1| (AP003003) hypothetical protein [Mesorhizobium loti]
Length = 156
Score = 60.5 bits (145), Expect = 3e-09
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNV----LPENEEG---VFVIRSIK 53
+ RVYY DTD GVVYHA YL++ ER RS++ V L + + G V+V+R ++
Sbjct: 25 LMARVYYADTDFSGVVYHARYLEFLERGRSDYLRLTGVHHTELADGKHGEKIVWVVRRME 84
Query: 54 ADFFTPASLGQVLEIRTQIKELRKVFVVLFQEI 86
DF +PA + +L + T+ + + + Q++
Sbjct: 85 IDFRSPARIDDILTVDTRTDAISGARIFMAQQL 117
>dbj|BAA89381.1| (AB025342) ORF7 [Moritella marina]
Length = 133
Score = 52.8 bits (125), Expect = 7e-07
Identities = 33/87 (37%), Positives = 45/87 (50%), Gaps = 4/87 (4%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPE--NEEGV-FVIRSIKADFFTPA 60
++YYEDTD GVVYH N+LKY ERAR E ++L NE G+ F + F
Sbjct: 10 QIYYEDTDHSGVVYHPNFLKYFERAR-EHVINSDLLATLWNERGLGFAVYKANMTFQDGV 68
Query: 61 SLGQVLEIRTQIKELRKVFVVLFQEIY 87
+V +IRT K + QE++
Sbjct: 69 EFAEVCDIRTSFVLDGKYKTIWRQEVW 95
>gb|AAL01059.1|AF409100_6 (AF409100) unknown [Photobacterium profundum]
Length = 133
Score = 49.3 bits (116), Expect = 7e-06
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLP-ENEEGV-FVIRSIKADFFTPAS 61
++YYEDTD GVVYH N+LKY ERAR + N+ G+ F + F
Sbjct: 10 QIYYEDTDHSGVVYHPNFLKYFERAREHVIDSDKLATLWNDHGLGFAVYKANMIFQDGVE 69
Query: 62 LGQVLEIRTQIKELRKVFVVLFQEIY 87
++ +IRT K + QE++
Sbjct: 70 FAEICDIRTSFTLDGKYKTLWRQEVW 95
>gb|AAF16410.1|AF051771_6 (AF051771) 4-hydroxybenzoyl CoA thioesterase [Pseudomonas sp.
DJ-12]
Length = 142
Score = 43.1 bits (100), Expect = 5e-04
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPEN----EEGVF--VIRSIKADFF 57
RV + D D G+V+ NY ++ + A FF V P E G+ + S A+F
Sbjct: 10 RVEFGDCDPVGIVWFPNYFRWLDAASRHFFISCGVPPWRTTLAERGIVGTPLVSSNANFS 69
Query: 58 TPASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGF 111
+P S VL I T+++E K V + + N+ P + + + G+
Sbjct: 70 SPVSYDDVLLIETEVREWGKKSFVQHHRVLRLSNSGEAPQLVMQADETRVFAGY 123
>ref|NP_214031.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67466|YE94_AQUAE Hypothetical protein AQ_1494
pir||H70429 conserved hypothetical protein aq_1494 - Aquifex aeolicus
gb|AAC07441.1| (AE000743) hypothetical protein [Aquifex aeolicus]
Length = 128
Score = 42.7 bits (99), Expect = 7e-04
Identities = 22/79 (27%), Positives = 40/79 (49%), Gaps = 3/79 (3%)
Query: 2 RCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGV---FVIRSIKADFFT 58
R RV + +TD++G+V+H+NY +Y E AR EF + + V+ + ++
Sbjct: 6 RRRVQFYETDAQGIVHHSNYFRYFEEARGEFLRSKGFPYSKMRDMGLEVVLLNAYCEYKK 65
Query: 59 PASLGQVLEIRTQIKELRK 77
P V E+ ++EL +
Sbjct: 66 PLFYDDVFEVHLNLEELSR 84
>gb|AAK48914.1|AF358662_1 (AF358662) unknown [Brucella melitensis]
Length = 106
Score = 42.4 bits (98), Expect = 0.001
Identities = 25/70 (35%), Positives = 41/70 (57%), Gaps = 7/70 (10%)
Query: 26 ERARSEFFFKQNV----LPEN---EEGVFVIRSIKADFFTPASLGQVLEIRTQIKELRKV 78
ER R++F QNV L E EE V+V+R ++ D+ PA + ++ I T++ E+R
Sbjct: 2 ERGRTDFLRLQNVHHIKLAEGSLGEEMVWVVRHMEIDYKAPARMDDLILIETRVSEIRGA 61
Query: 79 FVVLFQEIYC 88
V++ Q+I C
Sbjct: 62 RVIMAQKITC 71
>ref|NP_623402.1| (NC_003869) predicted thioesterase [Thermoanaerobacter
tengcongensis]
gb|AAM25006.1| (AE013134) predicted thioesterase [Thermoanaerobacter
tengcongensis]
Length = 138
Score = 42.4 bits (98), Expect = 0.001
Identities = 27/73 (36%), Positives = 43/73 (57%), Gaps = 3/73 (4%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPEN-EEGVFVIRSIKA--DFFTPA 60
RV Y +TD GVVY+ANYL + E R+EFF + + EE ++ I+A +F+ A
Sbjct: 9 RVRYGETDKMGVVYYANYLHWFEIGRTEFFRSLGMTYRDLEERDIMLPVIEAHCKYFSSA 68
Query: 61 SLGQVLEIRTQIK 73
++ IRT+++
Sbjct: 69 FYDDLIIIRTRLE 81
>ref|NP_346912.1| (NC_003030) Predicted esterase [Clostridium acetobutylicum]
gb|AAK78252.1|AE007540_5 (AE007540) Predicted esterase [Clostridium acetobutylicum]
Length = 138
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 2 RCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSI---KADFFT 58
R +V Y +TD G+VYHANY Y E AR + + + E + ++ + K +
Sbjct: 7 RIKVRYAETDKMGIVYHANYYVYFEAAREDLIEGAGIKYSDMEDIGIMMPLVETKCKYHE 66
Query: 59 PASLGQVLEIRTQIKELRKVFV 80
A G + + T + +L + V
Sbjct: 67 GAKYGDYILVETTLGKLSPIKV 88
>pdb|1LO7|A Chain A, X-Ray Structure Of 4-Hydroxybenzoyl Coa Thioesterase
Complexed With 4-Hydroxyphenacyl Coa
pdb|1LO8|A Chain A, X-Ray Crystal Structure Of 4-Hydroxybenzoyl Coa
Thioesterase Complexed With 4-Hydroxybenzyl Coa
pdb|1BVQ|A Chain A, Three-Dimensional Structure Of 4-Hydroxybenzoyl Coa
Thioesterase From Pseudomonas Sp. Strain Cbs-3
Length = 141
Score = 41.6 bits (96), Expect = 0.002
Identities = 28/83 (33%), Positives = 41/83 (48%), Gaps = 6/83 (7%)
Query: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPEN----EEGVF--VIRSIKA 54
M+ R+ + D D G+V++ NY ++ + A +F K + P E G+ I S A
Sbjct: 7 MQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQTVVERGIVGTPIVSCNA 66
Query: 55 DFFTPASLGQVLEIRTQIKELRK 77
F AS VL I T IKE R+
Sbjct: 67 SFVCTASYDDVLTIETCIKEWRR 89
>ref|NP_243154.1| (NC_002570) BH2288~unknown conserved protein [Bacillus halodurans]
dbj|BAB06007.1| (AP001515) BH2288~unknown conserved protein [Bacillus halodurans]
Length = 143
Score = 41.2 bits (95), Expect = 0.002
Identities = 36/131 (27%), Positives = 58/131 (43%), Gaps = 23/131 (17%)
Query: 5 VYYEDTDSEGVVYHANYLKYCERARSEFFFKQ--NVLPENEEGVF-VIRSIKADFFTPAS 61
V Y +TD GVV+H+NY + E R E + + ++GV + I A + P
Sbjct: 13 VRYAETDQMGVVHHSNYFIWFELGRGELIKEMGFHYADMEKDGVLSPVADIHASYKRPVH 72
Query: 62 LGQVLEIRTQIKE---LRKVF---VVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRS 115
G+ + I T +++ LR V+ VV + + C+ +S V +
Sbjct: 73 YGETVTIHTWVEQYDGLRVVYGYEVVNGEGVTCVTGSSTHVC--------------VKKD 118
Query: 116 TYSPIAIPKLF 126
T+ PIAI K F
Sbjct: 119 TFRPIAIRKHF 129
>sp|P56653|4HBT_PSESP 4-HYDROXYBENZOYL-COA THIOESTERASE
pir||C42560 4-chlorobenzoate dehalogenase (EC 3.8.1.6), 16K chain -
Pseudomonas sp. (strain CBS-3)
Length = 141
Score = 40.4 bits (93), Expect = 0.003
Identities = 28/83 (33%), Positives = 40/83 (47%), Gaps = 6/83 (7%)
Query: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPEN----EEGVF--VIRSIKA 54
M+ R+ + D D G+V+ NY ++ + A +F K + P E G+ I S A
Sbjct: 7 MQQRIEFGDCDPAGIVWFPNYHRWLDAASRNYFIKCGLPPWRQTVVERGIVGTPIVSCNA 66
Query: 55 DFFTPASLGQVLEIRTQIKELRK 77
F AS VL I T IKE R+
Sbjct: 67 SFVCTASYDDVLTIETCIKEWRR 89
>pdb|1LO9|A Chain A, X-Ray Crystal Structure Of 4-Hydroxybenzoyl Coa
Thioesterase Mutant D17n Complexed With
4-Hydroxybenzoyl Coa
Length = 141
Score = 39.7 bits (91), Expect = 0.006
Identities = 27/83 (32%), Positives = 41/83 (48%), Gaps = 6/83 (7%)
Query: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPEN----EEGVF--VIRSIKA 54
M+ R+ + D + G+V++ NY ++ + A +F K + P E G+ I S A
Sbjct: 7 MQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQTVVERGIVGTPIVSCNA 66
Query: 55 DFFTPASLGQVLEIRTQIKELRK 77
F AS VL I T IKE R+
Sbjct: 67 SFVCTASYDDVLTIETCIKEWRR 89
>ref|NP_442358.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
sp|Q55777|Y204_SYNY3 Hypothetical protein slr0204
pir||S76582 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA10428.1| (D64002) ORF_ID:slr0204~unknown protein [Synechocystis sp. PCC
6803]
Length = 138
Score = 39.3 bits (90), Expect = 0.008
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPEN--EEGVFVIRSIKA--DFFTP 59
+VY DTD GVVY +L+ C A + +++ +N G F + + A DFF P
Sbjct: 9 QVYLADTDGAGVVYFNQFLQMCHEAYESWLSSEHLSLQNIISVGDFALPLVHASIDFFAP 68
Query: 60 ASLGQVLEIRTQIKE 74
A G L + I +
Sbjct: 69 AHCGDRLLVNLTITQ 83
>pir||I39564 hypothetical protein 6 gbd-region [imported] - Alcaligenes
eutrophus
gb|AAC41422.1| (L36817) ORF6 [Ralstonia eutropha]
prf||2104199D ORF 6 [Ralstonia eutropha]
Length = 145
Score = 38.9 bits (89), Expect = 0.010
Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 4 RVYYEDTDSEGVVYHANYLKYCERARSEFF------FKQNVLPENEEGVFVIRSIKADFF 57
RV + + D + +V++A+YL YC+ +E++ + ++VL + +FV++S ++
Sbjct: 13 RVRWAEVDPQSIVFNAHYLTYCDICVTEYWRALGIRYPEDVLHAHGVDIFVVKS-TLEYH 71
Query: 58 TPASLGQVLEIRTQIKELRKVFVVLFQEIY 87
A LEIR ++ L + ++ E++
Sbjct: 72 ASARFDDELEIRGRMSRLGRSSMLFRVEMF 101
>ref|NP_242865.1| (NC_002570) 4-hydroxybenzoyl-CoA thioesterase [Bacillus
halodurans]
dbj|BAB05718.1| (AP001514) 4-hydroxybenzoyl-CoA thioesterase [Bacillus
halodurans]
Length = 138
Score = 38.9 bits (89), Expect = 0.010
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 4 RVYYEDTDSEGVVYHANYLKY----CERARSEFFFKQNVLPENEEGVFVIRSIKADFFTP 59
RV + DTD+ G+V++ NY K+ C +E F + L + + G F I F P
Sbjct: 9 RVKFGDTDAAGIVFYPNYYKWMDEACHHFLTELGFPTSELIDKKIG-FPIVEATCQFKAP 67
Query: 60 ASLGQVLEIRTQIKELR-KVFVV 81
+ IRT I+EL+ K F++
Sbjct: 68 LLFADHVFIRTSIRELKDKSFIL 90
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.326 0.141 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,684,769
Number of Sequences: 1026957
Number of extensions: 2819793
Number of successful extensions: 6148
Number of sequences better than 1.0e-02: 38
Number of HSP's better than 0.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6099
Number of HSP's gapped (non-prelim): 38
length of query: 133
length of database: 324,149,939
effective HSP length: 109
effective length of query: 24
effective length of database: 212,211,626
effective search space: 5093079024
effective search space used: 5093079024
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 89 (38.9 bits)