BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645129|ref|NP_207299.1| hypothetical protein
[Helicobacter pylori 26695]
         (54 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207299.1|  (NC_000915) hypothetical protein [Helicoba...   119  1e-26
ref|NP_223172.1|  (NC_000921) putative [Helicobacter pylori ...   101  2e-21

>ref|NP_207299.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64582 hypothetical protein HP0502 - Helicobacter pylori (strain 26695)
 gb|AAD07570.1| (AE000564) H. pylori predicted coding region HP0502 [Helicobacter
          pylori 26695]
          Length = 54

 Score =  119 bits (297), Expect = 1e-26
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MNLGVYYTPPYLVDCAYKLLKKHVGIEKYTLLDTACGNKEFLKLQHPKKNRSGY 54
          MNLGVYYTPPYLVDCAYKLLKKHVGIEKYTLLDTACGNKEFLKLQHPKKNRSGY
Sbjct: 1  MNLGVYYTPPYLVDCAYKLLKKHVGIEKYTLLDTACGNKEFLKLQHPKKNRSGY 54



>ref|NP_223172.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71931 hypothetical protein jhp0454 - Helicobacter pylori (strain J99)
 gb|AAD06032.1| (AE001479) putative [Helicobacter pylori J99]
          Length = 343

 Score =  101 bits (251), Expect = 2e-21
 Identities = 45/49 (91%), Positives = 46/49 (93%)

Query: 1  MNLGVYYTPPYLVDCAYKLLKKHVGIEKYTLLDTACGNKEFLKLQHPKK 49
          +NLG YYTPPYLVDCAYKLLKKHVGIE YTLLDTACGNKEFLKL HPKK
Sbjct: 14 VNLGAYYTPPYLVDCAYKLLKKHVGIENYTLLDTACGNKEFLKLHHPKK 62



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,199,126
Number of Sequences: 1026957
Number of extensions: 1171214
Number of successful extensions: 1704
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1702
Number of HSP's gapped (non-prelim): 2
length of query: 54
length of database: 324,149,939
effective HSP length: 30
effective length of query: 24
effective length of database: 293,341,229
effective search space: 7040189496
effective search space used: 7040189496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)