BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645130|ref|NP_207300.1| hypothetical protein
[Helicobacter pylori 26695]
         (246 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207300.1|  (NC_000915) hypothetical protein [Helicoba...   509  e-143
ref|NP_223172.1|  (NC_000921) putative [Helicobacter pylori ...   489  e-137

>ref|NP_207300.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64582 hypothetical protein HP0503 - Helicobacter pylori (strain 26695)
 gb|AAD07576.1| (AE000565) H. pylori predicted coding region HP0503 [Helicobacter
           pylori 26695]
          Length = 246

 Score =  509 bits (1311), Expect = e-143
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MGNPPYNDRTSFIKQDIKNKDFIFEIDHHLKSRDLGISFLKSFAILKPAFICVLHPLSYL 60
           MGNPPYNDRTSFIKQDIKNKDFIFEIDHHLKSRDLGISFLKSFAILKPAFICVLHPLSYL
Sbjct: 1   MGNPPYNDRTSFIKQDIKNKDFIFEIDHHLKSRDLGISFLKSFAILKPAFICVLHPLSYL 60

Query: 61  IKEANFKQLKLFKDHYRLLDALVVSSKSFTKSNEFPIVIALYERGRMDYAEIRRFVFPTD 120
           IKEANFKQLKLFKDHYRLLDALVVSSKSFTKSNEFPIVIALYERGRMDYAEIRRFVFPTD
Sbjct: 61  IKEANFKQLKLFKDHYRLLDALVVSSKSFTKSNEFPIVIALYERGRMDYAEIRRFVFPTD 120

Query: 121 CDTTLCLNDFDYIANYVDKYPNAKKVGACVGYFFPMRDINALKRNKTFLNAPSTNVVRIS 180
           CDTTLCLNDFDYIANYVDKYPNAKKVGACVGYFFPMRDINALKRNKTFLNAPSTNVVRIS
Sbjct: 121 CDTTLCLNDFDYIANYVDKYPNAKKVGACVGYFFPMRDINALKRNKTFLNAPSTNVVRIS 180

Query: 181 QDKLIYYQYIHYFKEIAPKIPYYFGNLDIIIDCFAFLEIKDAFLKDKRARLEYFKKLFQG 240
           QDKLIYYQYIHYFKEIAPKIPYYFGNLDIIIDCFAFLEIKDAFLKDKRARLEYFKKLFQG
Sbjct: 181 QDKLIYYQYIHYFKEIAPKIPYYFGNLDIIIDCFAFLEIKDAFLKDKRARLEYFKKLFQG 240

Query: 241 HPCEFD 246
           HPCEFD
Sbjct: 241 HPCEFD 246



>ref|NP_223172.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71931 hypothetical protein jhp0454 - Helicobacter pylori (strain J99)
 gb|AAD06032.1| (AE001479) putative [Helicobacter pylori J99]
          Length = 343

 Score =  489 bits (1258), Expect = e-137
 Identities = 238/246 (96%), Positives = 240/246 (96%)

Query: 1   MGNPPYNDRTSFIKQDIKNKDFIFEIDHHLKSRDLGISFLKSFAILKPAFICVLHPLSYL 60
           +GNPPYNDRTSFIKQDIKNKDFIFEID+ LKSRDLGISFLKSFAILKPAFICVLHPLSYL
Sbjct: 98  VGNPPYNDRTSFIKQDIKNKDFIFEIDNDLKSRDLGISFLKSFAILKPAFICVLHPLSYL 157

Query: 61  IKEANFKQLKLFKDHYRLLDALVVSSKSFTKSNEFPIVIALYERGRMDYAEIRRFVFPTD 120
           IKEANFKQLKLFKDHYRLLDA VVSSKSFTKSNEFPIVIALYERGRMDYA IRRFVFPTD
Sbjct: 158 IKEANFKQLKLFKDHYRLLDAFVVSSKSFTKSNEFPIVIALYERGRMDYAGIRRFVFPTD 217

Query: 121 CDTTLCLNDFDYIANYVDKYPNAKKVGACVGYFFPMRDINALKRNKTFLNAPSTNVVRIS 180
           CDTTLCLNDFDYIANYVDKYPNAKKVGACVGYFFPMRDINALKRNKTFLNAPS N VRIS
Sbjct: 218 CDTTLCLNDFDYIANYVDKYPNAKKVGACVGYFFPMRDINALKRNKTFLNAPSENAVRIS 277

Query: 181 QDKLIYYQYIHYFKEIAPKIPYYFGNLDIIIDCFAFLEIKDAFLKDKRARLEYFKKLFQG 240
           QDKLIYYQYIHYFKEIAPKIPYYFGNLDIIID FAFLEIKDAFLKDKRARLEYFKKLFQG
Sbjct: 278 QDKLIYYQYIHYFKEIAPKIPYYFGNLDIIIDHFAFLEIKDAFLKDKRARLEYFKKLFQG 337

Query: 241 HPCEFD 246
           HPCEFD
Sbjct: 338 HPCEFD 343



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.328    0.145    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,699,222
Number of Sequences: 1026957
Number of extensions: 6544325
Number of successful extensions: 18123
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18121
Number of HSP's gapped (non-prelim): 2
length of query: 246
length of database: 324,149,939
effective HSP length: 118
effective length of query: 128
effective length of database: 202,969,013
effective search space: 25980033664
effective search space used: 25980033664
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 96 (41.6 bits)