BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645132|ref|NP_207302.1| hypothetical protein
[Helicobacter pylori 26695]
         (154 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207302.1|  (NC_000915) hypothetical protein [Helicoba...   305  1e-82
ref|NP_223173.1|  (NC_000921) putative [Helicobacter pylori ...   275  2e-73
ref|NP_125851.1|  (NC_000868) hypothetical protein [Pyrococc...    53  1e-06

>ref|NP_207302.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64583 hypothetical protein HP0505 - Helicobacter pylori (strain 26695)
 gb|AAD07577.1| (AE000565) H. pylori predicted coding region HP0505 [Helicobacter
           pylori 26695]
          Length = 154

 Score =  305 bits (780), Expect = 1e-82
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MIDYAKQLGLISLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPL 60
           MIDYAKQLGLISLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPL
Sbjct: 1   MIDYAKQLGLISLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPL 60

Query: 61  LIHSFDDNELSEIVIREQQYGSKTQAMLYFCFSILELKTATPLLNRTATLKEHAFLTIHK 120
           LIHSFDDNELSEIVIREQQYGSKTQAMLYFCFSILELKTATPLLNRTATLKEHAFLTIHK
Sbjct: 61  LIHSFDDNELSEIVIREQQYGSKTQAMLYFCFSILELKTATPLLNRTATLKEHAFLTIHK 120

Query: 121 ANAPMFLEMLKIFGLLSQAHHSDVLKILEKILQN 154
           ANAPMFLEMLKIFGLLSQAHHSDVLKILEKILQN
Sbjct: 121 ANAPMFLEMLKIFGLLSQAHHSDVLKILEKILQN 154



>ref|NP_223173.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||D71931 hypothetical protein jhp0455 - Helicobacter pylori (strain J99)
 gb|AAD06022.1| (AE001479) putative [Helicobacter pylori J99]
          Length = 251

 Score =  275 bits (702), Expect = 2e-73
 Identities = 139/154 (90%), Positives = 146/154 (94%)

Query: 1   MIDYAKQLGLISLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPL 60
           MI YAK+LGLISLENLENTLK+L+KQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPL
Sbjct: 98  MIYYAKRLGLISLENLENTLKFLEKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPL 157

Query: 61  LIHSFDDNELSEIVIREQQYGSKTQAMLYFCFSILELKTATPLLNRTATLKEHAFLTIHK 120
           LIHSFDDNELSEIVI+EQQYGSKTQAMLYFCFSILELKTATPLLNRTA  KEHA L IH+
Sbjct: 158 LIHSFDDNELSEIVIKEQQYGSKTQAMLYFCFSILELKTATPLLNRTAMPKEHALLIIHE 217

Query: 121 ANAPMFLEMLKIFGLLSQAHHSDVLKILEKILQN 154
            NA +FLEMLKIFGLLSQ HH+DVLKILEKILQN
Sbjct: 218 TNALVFLEMLKIFGLLSQVHHNDVLKILEKILQN 251



>ref|NP_125851.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
 pir||C75204 hypothetical protein PAB0105 - Pyrococcus abyssi (strain Orsay)
 emb|CAB49082.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
          Length = 226

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 37/152 (24%), Positives = 70/152 (45%), Gaps = 9/152 (5%)

Query: 1   MIDYAKQLGLISLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPL 60
           M+  A + G+++  ++   LK+    K ++ED   I RE      +G   F +    YP+
Sbjct: 81  MVRLAHEHGILTYNDIYELLKFADDVKSYLEDKG-IRRESTNEELYG---FNIYEDVYPV 136

Query: 61  LIHSFDDNELSEIVIREQQYGSKTQAMLYFCFSILELKTATPLLNRTATLKEHAFLTIHK 120
                   E   IV++ +Q     Q+M+Y C  +  ++ +  L  R A   E   +  ++
Sbjct: 137 AKKELPSGEFIGIVLKHKQRAVGYQSMVYVCIPLTNVEPS--LAGRVARRNE---VVKYE 191

Query: 121 ANAPMFLEMLKIFGLLSQAHHSDVLKILEKIL 152
               +  E+LK F + S+ H +D++K L  I+
Sbjct: 192 VPVDLMKELLKAFIIASETHKNDIVKFLRSII 223



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.324    0.139    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,826,779
Number of Sequences: 1026957
Number of extensions: 2959868
Number of successful extensions: 10175
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10172
Number of HSP's gapped (non-prelim): 3
length of query: 154
length of database: 324,149,939
effective HSP length: 110
effective length of query: 44
effective length of database: 211,184,669
effective search space: 9292125436
effective search space used: 9292125436
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 92 (40.0 bits)