BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645133|ref|NP_207303.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(403 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207303.1| (NC_000915) conserved hypothetical secrete... 803 0.0
ref|NP_223174.1| (NC_000921) putative Outer membrane protei... 780 0.0
ref|NP_282362.1| (NC_002163) putative periplasmic protein [... 295 5e-79
ref|NP_220788.1| (NC_000963) unknown [Rickettsia prowazekii... 149 4e-35
dbj|BAB83598.1| (AB066296) toluene resistance protein Trg3 ... 149 4e-35
ref|NP_360194.1| (NC_003103) unknown [Rickettsia conorii] >... 146 4e-34
ref|NP_249358.1| (NC_002516) conserved hypothetical protein... 144 1e-33
ref|NP_438571.1| (NC_000907) conserved hypothetical protein... 135 1e-30
ref|NP_284865.1| (NC_003116) conserved hypothetical protein... 133 4e-30
ref|NP_273364.1| (NC_003112) conserved hypothetical protein... 132 7e-30
ref|NP_245180.1| (NC_002663) unknown [Pasteurella multocida... 129 6e-29
ref|NP_421828.1| (NC_002696) peptidase, M23/M37 family [Cau... 128 1e-28
gb|AAG10461.1|AF279106_23 (AF279106) predicted metallopepti... 124 2e-27
ref|NP_644199.1| (NC_003919) conserved hypothetical protein... 119 6e-26
ref|NP_639182.1| (NC_003902) conserved hypothetical protein... 119 8e-26
ref|NP_297460.1| (NC_002488) conserved hypothetical protein... 119 8e-26
ref|NP_540185.1| (NC_003317) LYSOSTAPHIN [Brucella melitens... 118 1e-25
ref|NP_539115.1| (NC_003317) LYSOSTAPHIN [Brucella melitens... 110 2e-23
ref|NP_104528.1| (NC_002678) hypothetical protein [Mesorhiz... 110 4e-23
ref|NP_623550.1| (NC_003869) Membrane proteins related to m... 109 7e-23
ref|NP_356470.1| (NC_003063) AGR_L_1345p [Agrobacterium tum... 108 9e-23
ref|NP_103730.1| (NC_002678) hypothetical protein [Mesorhiz... 107 2e-22
ref|NP_230279.1| (NC_002505) conserved hypothetical protein... 104 2e-21
ref|NP_228219.1| (NC_000853) conserved hypothetical protein... 102 6e-21
ref|NP_386713.1| (NC_003047) HYPOTHETICAL TRANSMEMBRANE PRO... 102 6e-21
ref|NP_662858.1| (NC_002932) peptidase, M23/M37 family [Chl... 102 8e-21
ref|NP_288293.1| (NC_002655) orf, hypothetical protein [Esc... 100 2e-20
pir||B42608 OrfU upstream of msbB - Escherichia coli (fragm... 100 3e-20
ref|NP_310593.1| (NC_002695) hypothetical protein [Escheric... 100 3e-20
sp|P24204|YEBA_ECOLI Hypothetical protein yebA precursor (O... 100 3e-20
ref|NP_232480.1| (NC_002506) conserved hypothetical protein... 100 4e-20
ref|NP_405614.1| (NC_003143) putative M23/M37 peptidase-fam... 99 7e-20
ref|NP_456457.1| (NC_003198) conserved hypothetical protein... 96 7e-19
ref|NP_460847.1| (NC_003197) putative Peptidase [Salmonella... 96 7e-19
gb|EAA02262.1| (AAAB01003334) ebiP1481 [Anopheles gambiae s... 96 7e-19
ref|NP_603374.1| (NC_003454) Cell wall endopeptidase family... 94 2e-18
ref|NP_253094.1| (NC_002516) hypothetical protein [Pseudomo... 92 8e-18
ref|NP_562530.1| (NC_003366) probable cell wall-binding pro... 91 2e-17
ref|NP_208334.1| (NC_000915) toxR-activated gene (tagE) [He... 91 3e-17
ref|NP_624857.1| (NC_003888) possible peptidase [Streptomyc... 91 3e-17
ref|NP_224174.1| (NC_000921) putative [Helicobacter pylori ... 91 3e-17
ref|NP_478319.1| (NC_003240) ORF_ID:all7672~similar to pept... 91 3e-17
ref|NP_660653.1| (NC_004061) hypothetical 46.7 kD protein i... 90 4e-17
ref|NP_422095.1| (NC_002696) peptidase, M23/M37 family [Cau... 89 9e-17
ref|NP_212895.1| (NC_001318) conserved hypothetical protein... 88 2e-16
ref|NP_624206.1| (NC_003869) Membrane proteins related to m... 87 3e-16
ref|NP_230154.1| (NC_002505) conserved hypothetical protein... 87 3e-16
ref|NP_214447.1| (NC_000918) putative protein [Aquifex aeol... 86 6e-16
ref|NP_623660.1| (NC_003869) Membrane proteins related to m... 86 8e-16
ref|NP_641139.1| (NC_003919) peptidase [Xanthomonas axonopo... 85 1e-15
ref|NP_282235.1| (NC_002163) putative periplasmic protein [... 85 2e-15
ref|NP_219300.1| (NC_000919) conserved hypothetical protein... 84 2e-15
ref|NP_622559.1| (NC_003869) Membrane proteins related to m... 84 3e-15
ref|NP_561118.1| (NC_003366) probable cell wall-binding pro... 84 3e-15
ref|NP_212396.1| (NC_001318) conserved hypothetical protein... 84 4e-15
ref|NP_636124.1| (NC_003902) peptidase [Xanthomonas campest... 83 5e-15
ref|NP_563527.1| (NC_003366) conserved hypothetical protein... 83 5e-15
ref|NP_230491.1| (NC_002505) tagE protein [Vibrio cholerae]... 82 1e-14
ref|NP_471977.1| (NC_003212) similar to cell wall binding p... 81 2e-14
ref|NP_420679.1| (NC_002696) peptidase, M23/M37 family [Cau... 80 4e-14
ref|NP_354816.1| (NC_003062) AGR_C_3364p [Agrobacterium tum... 80 6e-14
ref|NP_622494.1| (NC_003869) Membrane proteins related to m... 79 7e-14
ref|NP_298095.1| (NC_002488) conserved hypothetical protein... 79 9e-14
ref|NP_214195.1| (NC_000918) hypothetical protein [Aquifex ... 79 9e-14
dbj|BAB19208.1| (AB052554) YebA [Shewanella violacea] 79 1e-13
ref|NP_466027.1| (NC_003210) similar to cell wall binding p... 78 2e-13
ref|NP_385850.1| (NC_003047) HYPOTHETICAL TRANSMEMBRANE PRO... 77 3e-13
ref|NP_471052.1| (NC_003212) similar to minor capsid protei... 77 4e-13
ref|NP_108647.1| (NC_002678) hypothetical protein [Mesorhiz... 77 4e-13
ref|NP_296012.1| (NC_001263) cell wall glycyl-glycine endop... 77 5e-13
ref|NP_372479.1| (NC_002758) phi PVL ORF 15 and 16 homologu... 76 6e-13
ref|NP_375064.1| (NC_002745) hypothetical protein [Bacterio... 76 6e-13
ref|NP_487316.1| (NC_003272) probable peptidase [Nostoc sp.... 75 1e-12
ref|NP_214200.1| (NC_000918) lipoprotein NlpD fragment [Aqu... 75 2e-12
ref|NP_212380.1| (NC_001318) B. burgdorferi predicted codin... 75 2e-12
ref|NP_218594.1| (NC_000919) conserved hypothetical protein... 75 2e-12
ref|NP_244467.1| (NC_002570) cell wall-binding protein [Bac... 74 3e-12
ref|NP_440561.1| (NC_000911) lysostaphin [Synechocystis sp.... 74 4e-12
ref|NP_520956.1| (NC_003295) PUTATIVE TRANSMEMBRANE PROTEIN... 73 5e-12
ref|NP_489297.1| (NC_003272) probable peptidase [Nostoc sp.... 72 2e-11
dbj|BAA02464.1| (D13173) ORF1 [Synechococcus elongatus] 72 2e-11
ref|NP_046584.1| (NC_001884) putative transglycosylase [Bac... 71 2e-11
emb|CAC33652.1| (AJ293330) hypothetical protein [Rickettsia... 70 3e-11
ref|NP_219143.1| (NC_000919) conserved hypothetical protein... 69 8e-11
ref|NP_233425.1| (NC_002506) tagE protein [Vibrio cholerae]... 69 1e-10
emb|CAC33717.1| (AJ293329) hypothetical protein [Rickettsia... 69 1e-10
ref|NP_360730.1| (NC_003103) putative periplasmic protein [... 69 1e-10
gb|AAD11751.1| (AF067954) unknown [Salmonella typhimurium] 69 1e-10
ref|NP_242466.1| (NC_002570) BH1600~unknown conserved prote... 69 1e-10
ref|NP_486402.1| (NC_003272) lipoprotein [Nostoc sp. PCC 71... 68 2e-10
ref|NP_485902.1| (NC_003272) similar to peptidase [Nostoc s... 68 2e-10
ref|NP_252476.1| (NC_002516) conserved hypothetical protein... 68 2e-10
ref|NP_218489.1| (NC_000919) conserved hypothetical protein... 68 2e-10
ref|NP_487393.1| (NC_003272) putative peptidase [Nostoc sp.... 68 2e-10
ref|NP_294572.1| (NC_001263) lipoprotein, putative [Deinoco... 67 3e-10
gb|AAL82371.1| (AF424783) tail length tape measure protein ... 67 4e-10
sp|O05156|ALE1_STACP GLYCYL-GLYCINE ENDOPEPTIDASE ALE-1 PRE... 66 8e-10
ref|NP_441943.1| (NC_000911) lipoprotein; NlpD [Synechocyst... 66 8e-10
ref|NP_058454.1| (NC_002321) orf 16 [Staphylococcus aureus ... 65 1e-09
ref|NP_061640.1| (NC_002486) phi PVL ORF 15 and 16 homologu... 65 1e-09
ref|NP_646712.1| (NC_003923) hypothetical protein [Staphylo... 65 1e-09
gb|AAC46072.1| (U50357) zoocin A endopeptidase [Streptococc... 65 2e-09
sp|P10547|LSTP_STASI LYSOSTAPHIN PRECURSOR (GLYCYL-GLYCINE ... 64 2e-09
ref|NP_219139.1| (NC_000919) conserved hypothetical protein... 64 2e-09
pir||A25881 lysostaphin precursor - Staphylococcus simulans... 64 2e-09
sp|P10548|LSTP_STAST LYSOSTAPHIN PRECURSOR (GLYCYL-GLYCINE ... 64 2e-09
ref|NP_212389.1| (NC_001318) B. burgdorferi predicted codin... 64 3e-09
ref|NP_102746.1| (NC_002678) lipoprotein [Mesorhizobium lot... 62 9e-09
ref|NP_282382.1| (NC_002163) putative periplasmic protein [... 62 1e-08
ref|NP_643237.1| (NC_003919) peptidase [Xanthomonas axonopo... 62 2e-08
ref|NP_391114.1| (NC_000964) alternate gene name: yutA [Bac... 61 2e-08
ref|NP_629962.1| (NC_003888) putative membrane protein [Str... 61 3e-08
ref|NP_298152.1| (NC_002488) hypothetical protein [Xylella ... 60 3e-08
ref|NP_224173.1| (NC_000921) putative [Helicobacter pylori ... 60 5e-08
ref|NP_066789.1| (NC_002576) putative peptidase [Rhodococcu... 60 6e-08
ref|NP_621866.1| (NC_003869) Membrane proteins related to m... 60 6e-08
ref|NP_628133.1| (NC_003888) possible secreted peptidase [S... 59 8e-08
ref|NP_638107.1| (NC_003902) peptidase [Xanthomonas campest... 59 1e-07
ref|NP_628288.1| (NC_003888) probable peptidase [Streptomyc... 58 2e-07
ref|NP_208335.1| (NC_000915) toxR-activated gene (tagE) [He... 58 2e-07
ref|NP_612844.1| (NC_003524) Gp15 protein [bacteriophage ph... 58 2e-07
pir||T13216 minor capsid protein 1608 - Lactobacillus phage... 57 3e-07
ref|NP_519327.1| (NC_003295) PROBABLE LIPOPROTEIN NLPD/LPPB... 57 5e-07
ref|NP_635417.1| (NC_003902) conserved hypothetical protein... 57 5e-07
ref|NP_638206.1| (NC_003902) conserved hypothetical protein... 57 5e-07
ref|NP_600087.1| (NC_003450) COG0739:Membrane proteins rela... 57 5e-07
ref|NP_215465.1| (NC_000962) hypothetical protein Rv0950c [... 56 7e-07
pir||T45433 hypothetical protein MLCB373.02c [imported] - M... 56 7e-07
gb|AAC38576.1| (AF042351) novel lipoprotein NlpD [Ralstonia... 56 7e-07
ref|NP_654672.1| (NC_003995) Peptidase_M37, Peptidase famil... 56 7e-07
ref|NP_301240.1| (NC_002677) conserved hypothetical protein... 56 7e-07
ref|NP_244303.1| (NC_002570) BH3436~unknown conserved prote... 56 9e-07
ref|NP_539996.1| (NC_003317) LIPOPROTEIN NLPD [Brucella mel... 56 9e-07
ref|NP_488047.1| (NC_003272) hypothetical protein [Nostoc s... 56 9e-07
ref|NP_438915.1| (NC_000907) conserved hypothetical protein... 55 1e-06
ref|NP_274491.1| (NC_003112) lipoprotein NlpD, putative [Ne... 55 1e-06
ref|NP_489203.1| (NC_003272) hypothetical protein [Nostoc s... 55 1e-06
ref|NP_289291.1| (NC_002655) lipoprotein [Escherichia coli ... 55 1e-06
pir||S45580 hypothetical protein X (rpoS 5' region) - Esche... 55 1e-06
ref|NP_417222.1| (NC_000913) lipoprotein [Escherichia coli ... 55 1e-06
gb|AAG53882.1|AF275947_1 (AF275947) lipoprotein NlpD [Esche... 55 1e-06
gb|AAF05333.1|AF182102_1 (AF182102) lipoprotein [Escherichi... 55 1e-06
ref|NP_284407.1| (NC_003116) putative membrane peptidase [N... 55 1e-06
ref|NP_627576.1| (NC_003888) putative peptidase (putative s... 55 2e-06
ref|NP_643350.1| (NC_003919) conserved hypothetical protein... 55 2e-06
ref|NP_630845.1| (NC_003888) putative secreted peptidase [S... 55 2e-06
gb|AAF73517.1| (AF244357) lipoprotein precursor NlpD [Coxie... 55 2e-06
ref|NP_298277.1| (NC_002488) hypothetical protein [Xylella ... 55 2e-06
ref|NP_640380.1| (NC_003919) conserved hypothetical protein... 55 2e-06
gb|AAG27176.1|AF270497_1 (AF270497) lipoprotein [Escherichi... 54 2e-06
ref|NP_457314.1| (NC_003198) lipoprotein NlpD precursor [Sa... 54 3e-06
ref|NP_461846.1| (NC_003197) lipoprotein [Salmonella typhim... 54 3e-06
ref|NP_601699.1| (NC_003450) COG0739:Membrane proteins rela... 54 3e-06
emb|CAA76806.1| (Y17610) NlpD [Salmonella typhi] 54 3e-06
sp|P39700|NLPD_SALDU Lipoprotein nlpD precursor >gi|3150246... 54 3e-06
dbj|BAB99890.1| (AP005281) Membrane proteins related to met... 54 3e-06
pir||S58445 lipoprotein D - Salmonella typhimurium (fragmen... 54 3e-06
gb|AAB62278.1| (L77194) peptidoglycan hydrolase [Staphyloco... 54 4e-06
ref|NP_370800.1| (NC_002758) peptidoglycan hydrolase [Staph... 54 4e-06
ref|NP_655331.1| (NC_003995) Peptidase_M37, Peptidase famil... 54 4e-06
gb|AAD51395.1|AF117715_4 (AF117715) novel lipoprotein homol... 54 4e-06
ref|NP_299982.1| (NC_002488) conserved hypothetical protein... 54 4e-06
ref|NP_645067.1| (NC_003923) peptidoglycan hydrolase [Staph... 54 4e-06
ref|NP_653439.1| (NC_003995) Peptidase_M37, Peptidase famil... 54 4e-06
ref|NP_628955.1| (NC_003888) putative peptidase [Streptomyc... 53 6e-06
ref|NP_246446.1| (NC_002663) unknown [Pasteurella multocida... 53 7e-06
ref|NP_442898.1| (NC_000911) unknown protein [Synechocystis... 53 7e-06
ref|NP_642059.1| (NC_003919) lipoprotein [Xanthomonas axono... 52 9e-06
ref|NP_655767.1| (NC_003995) Peptidase_M37, Peptidase famil... 52 9e-06
ref|NP_252313.1| (NC_002516) conserved hypothetical protein... 52 1e-05
ref|NP_643675.1| (NC_003919) conserved hypothetical protein... 52 1e-05
gb|AAL16090.1|AF421351_2 (AF421351) murein endopeptidase [A... 52 1e-05
ref|NP_421051.1| (NC_002696) peptidase, M23/M37 family [Cau... 52 2e-05
ref|NP_637079.1| (NC_003902) lipoprotein [Xanthomonas campe... 51 2e-05
sp|Q46798|YGER_ECOLI Hypothetical lipoprotein ygeR precursor 51 3e-05
ref|NP_417341.1| (NC_000913) putative lipoprotein [Escheric... 51 3e-05
ref|NP_311765.1| (NC_002695) putative lipoprotein [Escheric... 51 3e-05
ref|NP_406819.1| (NC_003143) lipoprotein [Yersinia pestis] ... 51 3e-05
gb|AAF05335.1|AF182103_1 (AF182103) lipoprotein [Escherichi... 51 3e-05
ref|NP_294321.1| (NC_001263) conserved hypothetical protein... 50 4e-05
ref|NP_457436.1| (NC_003198) possible lipoprotein [Salmonel... 50 5e-05
gb|AAF80360.1|AF157831_2 (AF157831) 43 kDa antigen [Bartone... 50 5e-05
ref|NP_461954.1| (NC_003197) putative metalloendopeptidase ... 50 5e-05
gb|AAB88077.1| (U81296) lipoprotein [Sinorhizobium meliloti] 50 5e-05
gb|AAC38174.1| (AF000945) lipoprotein [Vibrio cholerae] 50 6e-05
ref|NP_230184.1| (NC_002505) lipoprotein NlpD [Vibrio chole... 50 6e-05
ref|NP_440919.1| (NC_000911) hypothetical protein [Synechoc... 49 8e-05
ref|NP_642677.1| (NC_003919) peptidase [Xanthomonas axonopo... 49 8e-05
gb|AAF20815.1|AF198628_1 (AF198628) NlpD [Xenorhabdus nemat... 49 8e-05
ref|NP_638557.1| (NC_003902) conserved hypothetical protein... 49 8e-05
ref|NP_629757.1| (NC_003888) hypothetical protein SC2E1.40c... 49 8e-05
ref|NP_385642.1| (NC_003047) LIPOPROTEIN PRECURSOR [Sinorhi... 49 1e-04
ref|NP_646207.1| (NC_003923) hypothetical protein [Staphylo... 48 2e-04
ref|NP_075513.1| (NC_002661) orf588 [Staphylococcus aureus ... 48 2e-04
gb|AAL82321.1| (AF424782) tail fiber protein [Staphylococcu... 48 2e-04
ref|NP_218884.1| (NC_000919) conserved hypothetical protein... 48 2e-04
gb|AAM49603.1|AF513855_3 (AF513855) phi12 tail fiber protei... 48 2e-04
ref|NP_637613.1| (NC_003902) peptidase [Xanthomonas campest... 48 2e-04
ref|NP_645003.1| (NC_003923) ORFID:MW0188~hypothetical prot... 48 2e-04
ref|NP_370736.1| (NC_002758) hypothetical protein [Staphylo... 48 2e-04
sp|P47764|NLPD_YEREN LIPOPROTEIN NLPD >gi|687582|gb|AAC4339... 47 3e-04
pir||S49470 hypothetical protein - Salmonella choleraesuis ... 47 3e-04
gb|AAF05318.1|AF178851_1 (AF178851) lipoprotein [Pseudomona... 47 3e-04
ref|NP_391536.1| (NC_000964) alternate gene name: ywnI [Bac... 47 3e-04
gb|AAM75799.1| (AF349457) structural protein [Lactococcus l... 47 3e-04
ref|NP_246553.1| (NC_002663) unknown [Pasteurella multocida... 47 3e-04
ref|NP_108727.1| (NC_002703) minor structural protein 3 [Ba... 47 4e-04
ref|NP_076626.1| (NC_002666) endopeptidase [bacteriophage b... 47 4e-04
ref|NP_112710.1| (NC_002747) ORF47 [Lactococcus lactis bact... 47 4e-04
ref|NP_281342.1| (NC_002163) putative periplasmic protein [... 47 5e-04
ref|NP_438864.1| (NC_000907) lipoprotein [Haemophilus influ... 46 9e-04
ref|NP_532384.1| (NC_003304) lipoprotein [Agrobacterium tum... 46 9e-04
ref|NP_354688.1| (NC_003062) AGR_C_3124p [Agrobacterium tum... 46 9e-04
gb|AAD33932.1|AF144608_1 (AF144608) lipoprotein NlpD [Vibri... 45 0.001
pir||T50918 hypothetical protein nlpD [imported] - Rubriviv... 45 0.001
ref|NP_254238.1| (NC_002516) hypothetical protein [Pseudomo... 45 0.002
gb|AAL16677.1|AF358688_1 (AF358688) putative toxR-activated... 45 0.002
ref|NP_420803.1| (NC_002696) peptidase, M23/M37 family [Cau... 45 0.002
ref|NP_403727.1| (NC_003143) putative membrane protein [Yer... 45 0.002
gb|AAL89761.1|AF484425_2 (AF484425) NlpD [Bartonella henselae] 45 0.002
gb|AAK62524.1| (AY034092) putative peptidase [Micrococcus s... 45 0.002
sp|P36685|LPPB_HAESO OUTER MEMBRANE ANTIGENIC LIPOPROTEIN B... 44 0.003
ref|NP_653736.1| (NC_003995) Peptidase_M37, Peptidase famil... 44 0.004
emb|CAA71357.1| (Y10306) lysostaphin-like protein [Thermoto... 44 0.004
ref|NP_229460.1| (NC_000853) conserved hypothetical protein... 44 0.004
ref|NP_282422.1| (NC_002163) putative periplasmic protein [... 44 0.004
ref|NP_372727.1| (NC_002758) conserved hypothetical protein... 43 0.006
ref|NP_218303.1| (NC_000962) hypothetical protein Rv3786c [... 43 0.006
ref|NP_628263.1| (NC_003888) possible secreted peptidase [S... 43 0.006
ref|NP_338445.1| (NC_002755) hypothetical protein [Mycobact... 43 0.006
ref|NP_253611.1| (NC_002516) conserved hypothetical protein... 43 0.008
ref|NP_290196.1| (NC_002655) putative membrane protein [Esc... 43 0.008
ref|NP_220684.1| (NC_000963) OUTER MEMBRANE ANTIGENIC LIPOP... 43 0.008
sp|P37690|YIBP_ECOLI Hypothetical protein yibP 43 0.008
ref|NP_254050.1| (NC_002516) hypothetical protein [Pseudomo... 42 0.010
>ref|NP_207303.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||B64583 conserved hypothetical secreted protein HP0506 - Helicobacter
pylori (strain 26695)
gb|AAD07571.1| (AE000565) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 403
Score = 803 bits (2075), Expect = 0.0
Identities = 403/403 (100%), Positives = 403/403 (100%)
Query: 1 MVFFHKKIILNFIYSLMVAFLSHGVLLKADGMAKKQTLLVGERLVWDKLTLLGFLEKNHI 60
MVFFHKKIILNFIYSLMVAFLSHGVLLKADGMAKKQTLLVGERLVWDKLTLLGFLEKNHI
Sbjct: 1 MVFFHKKIILNFIYSLMVAFLSHGVLLKADGMAKKQTLLVGERLVWDKLTLLGFLEKNHI 60
Query: 61 PQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNTLIQALIPISQDLQIHIYKKGEDYFLD 120
PQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNTLIQALIPISQDLQIHIYKKGEDYFLD
Sbjct: 61 PQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNTLIQALIPISQDLQIHIYKKGEDYFLD 120
Query: 121 FIPIIFTRKEKTLLLSLQTSPYQDIIKATNDPLLANQLMNAYKKSVPFKRLVKNDKIAIV 180
FIPIIFTRKEKTLLLSLQTSPYQDIIKATNDPLLANQLMNAYKKSVPFKRLVKNDKIAIV
Sbjct: 121 FIPIIFTRKEKTLLLSLQTSPYQDIIKATNDPLLANQLMNAYKKSVPFKRLVKNDKIAIV 180
Query: 181 YTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVAGFLLETPVKYTRI 240
YTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVAGFLLETPVKYTRI
Sbjct: 181 YTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVAGFLLETPVKYTRI 240
Query: 241 SSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNEL 300
SSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNEL
Sbjct: 241 SSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNEL 300
Query: 301 RLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTA 360
RLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTA
Sbjct: 301 RLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTA 360
Query: 361 KSKLHGKQREVFLEKAQRSKQKLEELLKTHSFEKNSFYLLEGF 403
KSKLHGKQREVFLEKAQRSKQKLEELLKTHSFEKNSFYLLEGF
Sbjct: 361 KSKLHGKQREVFLEKAQRSKQKLEELLKTHSFEKNSFYLLEGF 403
>ref|NP_223174.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71928 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06037.1| (AE001480) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 406
Score = 780 bits (2013), Expect = 0.0
Identities = 392/406 (96%), Positives = 398/406 (97%), Gaps = 3/406 (0%)
Query: 1 MVFFHKKIILNFIYSLMVAFLSH---GVLLKADGMAKKQTLLVGERLVWDKLTLLGFLEK 57
MVFFHKKIILNFIYSLMVAFL H GVLLKADGMAKKQTLLVGERLVWDKLTLLGFLEK
Sbjct: 1 MVFFHKKIILNFIYSLMVAFLFHLSYGVLLKADGMAKKQTLLVGERLVWDKLTLLGFLEK 60
Query: 58 NHIPQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNTLIQALIPISQDLQIHIYKKGEDY 117
NHIPQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNTLIQALIPISQDLQIHIYKKGEDY
Sbjct: 61 NHIPQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNTLIQALIPISQDLQIHIYKKGEDY 120
Query: 118 FLDFIPIIFTRKEKTLLLSLQTSPYQDIIKATNDPLLANQLMNAYKKSVPFKRLVKNDKI 177
FLDFIPI+FTRKE+TLLLSLQTSPYQDI+KATNDPLLANQLMNAYKKSVPFKRLVKNDKI
Sbjct: 121 FLDFIPIVFTRKERTLLLSLQTSPYQDIVKATNDPLLANQLMNAYKKSVPFKRLVKNDKI 180
Query: 178 AIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVAGFLLETPVKY 237
AIVYTRDYRVGQAFGQPTIKMAMVSSR +QYYLFSHSNG YYDSKAQEVAGFLLETPVKY
Sbjct: 181 AIVYTRDYRVGQAFGQPTIKMAMVSSRLHQYYLFSHSNGRYYDSKAQEVAGFLLETPVKY 240
Query: 238 TRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHL 297
TRISSPFSYGRFHPVLKV+RPHYGVDYAAKHGSLIHSASDGRVGF+GVKAGYGKVVEIHL
Sbjct: 241 TRISSPFSYGRFHPVLKVKRPHYGVDYAAKHGSLIHSASDGRVGFIGVKAGYGKVVEIHL 300
Query: 298 NELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
NELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI
Sbjct: 301 NELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 360
Query: 358 RTAKSKLHGKQREVFLEKAQRSKQKLEELLKTHSFEKNSFYLLEGF 403
RTAKSKLHGKQREVFLEKAQ SKQKLEEL KTHSFEKNSFYLLEGF
Sbjct: 361 RTAKSKLHGKQREVFLEKAQYSKQKLEELFKTHSFEKNSFYLLEGF 406
>ref|NP_282362.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||A81328 probable periplasmic protein Cj1215 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73469.1| (AL139077) putative periplasmic protein [Campylobacter jejuni]
Length = 386
Score = 295 bits (756), Expect = 5e-79
Identities = 155/352 (44%), Positives = 225/352 (63%), Gaps = 5/352 (1%)
Query: 42 ERLVWDKL-TLLGFLEKNHIPQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNTLIQALI 100
E L WD TLL FL++N IP LYY L +D+EL+++I + Y L+D NN + Q LI
Sbjct: 21 EELTWDNGDTLLKFLQRNSIPMSLYYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLI 80
Query: 101 PISQDLQIHIYK-KGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQDIIKATNDPLLANQLM 159
PIS DLQIHIYK K Y L F P+ + ++++ L L++++S YQD+ + + LA ++
Sbjct: 81 PISDDLQIHIYKDKDGQYTLAFTPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMV 140
Query: 160 NAYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYY 219
A++ S+ F+ + K D++ + Y + R+G+ +G IKMAMV + +FS+ N +Y
Sbjct: 141 RAFRGSINFRNIQKGDEVTLYYEQKRRMGKLWGDINIKMAMVEINKSAREVFSY-NDIFY 199
Query: 220 DSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGR 279
D +E+ FLL PV YTRISSPF+ R+HP+LK R H G+DYAA G+ + SA G
Sbjct: 200 DRDGKELESFLLTKPVNYTRISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGV 259
Query: 280 VGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGP 338
V F+G K GYG V++I H + +YAH+S FA +K G V +GQ+I VGSTG+STGP
Sbjct: 260 VTFIGTKGGYGNVIQIKHDSGYMTLYAHLSRFAK-IKNGQKVNQGQVIAYVGSTGMSTGP 318
Query: 339 HLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLEELLKTH 390
HLHFGVY N++ INP ++ AKS+L GK +E F +Q ++E L ++
Sbjct: 319 HLHFGVYLNNKAINPASVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASN 370
>ref|NP_220788.1| (NC_000963) unknown [Rickettsia prowazekii]
pir||F71698 hypothetical protein RP407 - Rickettsia prowazekii
emb|CAA14864.1| (AJ235271) unknown [Rickettsia prowazekii]
Length = 458
Score = 149 bits (377), Expect = 4e-35
Identities = 96/305 (31%), Positives = 168/305 (54%), Gaps = 19/305 (6%)
Query: 94 TLIQALIPISQDLQ-IHIYKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQDIIKA--TN 150
T + ++ I L+ I + ++G+++ ++ I + ++K ++++++ + K +N
Sbjct: 141 TFLNKIVIIIDKLKTIKVIREGDNFKVEEIVVPLSKKVSKSSVNIESNFMSALKKLGLSN 200
Query: 151 DPLLANQLMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQA----FGQPTIKMAMVSSRSN 206
+ ++ +L+NAY + F+R +KN A V T Y G+ +S +
Sbjct: 201 NSII--ELINAYAYQIDFQRQIKNGDTATVITEKYVTEDGKFSHHGKILYVSLNLSGKEY 258
Query: 207 QYYLFSHSNGH----YYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGV 262
Y +SH N ++ + V LL+TP+K ++SS + R HP+L + H GV
Sbjct: 259 NIYRYSHDNNANNYAFFSEDGKSVKRSLLKTPLKVIKVSSHYG-NRKHPILGYTKMHRGV 317
Query: 263 DYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVK 321
D+AA G+ I+SA +G + +G K+GYGK +++ H L YAH S+FA LK GS VK
Sbjct: 318 DFAAPTGTPIYSAGNGVITEIGWKSGYGKFIQVKHSGTLSTAYAHASSFAKNLKVGSIVK 377
Query: 322 KGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQ 381
+GQ+I VGSTG ++GPHLH+ V + + +NP+ T +L+GK LEK ++ KQ
Sbjct: 378 QGQVIAYVGSTGRASGPHLHYEVKIDGKHVNPMSVKTTPGIELNGKN----LEKFKQFKQ 433
Query: 382 KLEEL 386
+++ L
Sbjct: 434 EIKTL 438
>dbj|BAB83598.1| (AB066296) toluene resistance protein Trg3 [Pseudomonas putida]
Length = 473
Score = 149 bits (377), Expect = 4e-35
Identities = 83/208 (39%), Positives = 113/208 (53%), Gaps = 5/208 (2%)
Query: 175 DKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQY----YLFSHSNGHYYDSKAQEVAGFL 230
D+ +VY + G+ G I A ++R Y Y N YY + +
Sbjct: 247 DEFDVVYEQKVMDGKVVGTGNILSARFTNRGKTYTAVRYTNKQGNTTYYTADGNSLRKAF 306
Query: 231 LETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYG 290
+ TPV + RISS FS GR HP+L R H GVDYAA G+ I +A DGR+ G + GYG
Sbjct: 307 IRTPVDFARISSRFSAGRKHPILNKIRAHKGVDYAAPRGTPIKAAGDGRIELAGRRGGYG 366
Query: 291 KVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSR 349
V I H N + +Y HM FA G+K GS VK+GQIIG +G+TGLSTGPHLH+ N
Sbjct: 367 NTVIIQHGNRYKTLYGHMQGFAKGIKTGSTVKQGQIIGYIGTTGLSTGPHLHYEFQVNGV 426
Query: 350 PINPLGYIRTAKSKLHGKQREVFLEKAQ 377
++PL + +R+ FL+++Q
Sbjct: 427 HVDPLSQKVPMADPIAKNERQRFLQQSQ 454
>ref|NP_360194.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL03095.1| (AE008617) unknown [Rickettsia conorii]
Length = 476
Score = 146 bits (369), Expect = 4e-34
Identities = 110/378 (29%), Positives = 188/378 (49%), Gaps = 29/378 (7%)
Query: 33 AKKQTLLVGERLVWDKLTLLGFLEKNHIPQKLYYNLSSQDKE----LSAEIQSNVTY-YT 87
++++T+ E +V T+ L + HIP+ + S KE + +I +T+ Y
Sbjct: 86 SEEETISFKEVVVKKGDTIKSILIEQHIPKNEIDKIVSLIKEGKLSSALKIGQQITFEYE 145
Query: 88 LRDANNT----------LIQALIPISQDLQIHIYKKGEDYFLDFIPIIFTRKEKTLLLSL 137
+ N L + +I I + I + ++G+++ ++ I + ++K +S+
Sbjct: 146 TKIIENEDEDLTSEVAFLNKIVIIIDKLKTIEVIREGDNFKVEEIVVPLSKKVAKSSVSI 205
Query: 138 QTSPYQDIIKATNDPLLANQLMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQA----FGQ 193
+ + + K +L+NAY + F+R +K A V T Y G+
Sbjct: 206 EANFMSALKKLGLSDNSIIELINAYAYQIDFQRQIKRGDTATVITEKYVTEDGKFSHHGK 265
Query: 194 PTIKMAMVSSRSNQYYLFSHSNGH----YYDSKAQEVAGFLLETPVKYTRISSPFSYGRF 249
+S + Y +SH N ++ + V LL+TP+K ++SS + R
Sbjct: 266 ILYVSLNLSGKEYNIYRYSHDNNANNHAFFSEDGKSVKRSLLKTPLKVIKVSSHYG-NRK 324
Query: 250 HPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMS 308
HP+L + H GVD+AA G+ I+SA +G + +G K+GYGK +++ H L YAH S
Sbjct: 325 HPILGYTKMHRGVDFAAPTGTPIYSAGNGVITEIGWKSGYGKFIQVKHSGTLSTAYAHAS 384
Query: 309 AFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQ 368
FA LK GS VK+GQII VGSTG +T PHLH+ V + + +NP+ T +L+GK
Sbjct: 385 NFAKNLKVGSIVKQGQIIAYVGSTGRATAPHLHYEVKIDGKHVNPMSVKTTPGIELNGKN 444
Query: 369 REVFLEKAQRSKQKLEEL 386
LEK ++ K++++ L
Sbjct: 445 ----LEKFKQFKKEIKTL 458
>ref|NP_249358.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||B83563 conserved hypothetical protein PA0667 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04056.1|AE004501_8 (AE004501) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 447
Score = 144 bits (364), Expect = 1e-33
Identities = 88/242 (36%), Positives = 122/242 (50%), Gaps = 6/242 (2%)
Query: 154 LANQLMNAYKKSVPFKR-LVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQY---- 208
L L N + + F L + D+ ++Y + G+ I A +R Y
Sbjct: 198 LVTSLSNIFGYDIDFALDLREGDEFDVIYEQHKVNGKQVATGNILAARFVNRGKTYTAVR 257
Query: 209 YLFSHSNGHYYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKH 268
Y N YY + + + TPV + RISS FS GR HP+L R H GVDYAA
Sbjct: 258 YTNKQGNTSYYRADGSSMRKAFIRTPVDFARISSRFSLGRRHPILNKIRAHKGVDYAAPI 317
Query: 269 GSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIG 327
G+ I + DG++ G K GYG V I H R +Y HMS FA G++ G+ VK+GQIIG
Sbjct: 318 GTPIKATGDGKILEAGRKGGYGNAVVIQHGQRYRTIYGHMSRFAKGIRAGTSVKQGQIIG 377
Query: 328 RVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLEELL 387
VG TGL+TGPHLH+ N R ++PL L G R+ F+ + Q ++++
Sbjct: 378 YVGMTGLATGPHLHYEFQINGRHVDPLSAKLPMADPLGGADRKRFMAQTQPMIARMDQEK 437
Query: 388 KT 389
KT
Sbjct: 438 KT 439
>ref|NP_438571.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44693|YEBA_HAEIN Hypothetical protein HI0409
pir||F64151 hypothetical protein HI0409 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22068.1| (U32724) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 475
Score = 135 bits (339), Expect = 1e-30
Identities = 98/323 (30%), Positives = 167/323 (51%), Gaps = 10/323 (3%)
Query: 68 LSSQDKELSAEIQSNVTYYTLRDANNTLIQALIPISQDLQIHIYKKGED--YFLDFIPII 125
L + D EL A +++ +Y + D N+ L + L + + + IY++ ED + I
Sbjct: 156 LIALDPEL-AHLKAGQQFYWILDKNDNL-EYLNWLVSEKEERIYERLEDGKFKRQVIEKK 213
Query: 126 FTRKEKTLLLSLQTSPYQDIIKATNDPLLANQLMNAYKKSVPFKRLVKNDKIAIVYTRDY 185
+++ L +Q S + + D +QL NA + V ++L K + AI+ +R+Y
Sbjct: 214 SIWRKEVLKGEIQNSLNSSLREKGLDTRQISQLSNALQWQVSLRKLKKGTQFAILVSREY 273
Query: 186 RVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVA-GFLLETPVKYTRISSPF 244
+ GQ ++ +SS YY +NG YY+ + + + GF + R+SSPF
Sbjct: 274 LGDKLTGQGNVEALRISSGGKNYYAVQAANGRYYNQQGETLGKGFARYPLQRQARVSSPF 333
Query: 245 SYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG-YGKVVEI-HLNELRL 302
+ R HPV RPH GVD++ G+ + + +DG V + +AG G+ V + H E +
Sbjct: 334 NPNRRHPVTGRIRPHKGVDFSVSQGTPVIAPADGTVEKVAYQAGGAGRYVMLRHGREYQT 393
Query: 303 VYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGY-IRTAK 361
VY H+S +K G VKKG+ I G+TG+STGPHLH+ + N R +NPL +
Sbjct: 394 VYMHLSKSL--VKAGQTVKKGERIALSGNTGISTGPHLHYEFHINGRAVNPLTVKLPGTS 451
Query: 362 SKLHGKQREVFLEKAQRSKQKLE 384
S + +R+ FL + + +++ L+
Sbjct: 452 SGMTSAERKQFLVRVREAERMLK 474
>ref|NP_284865.1| (NC_003116) conserved hypothetical protein, possible peptidase
[Neisseria meningitidis Z2491]
pir||A81790 conserved hypothetical protein NMA2172 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB85384.1| (AL162758) conserved hypothetical protein, possible peptidase
[Neisseria meningitidis Z2491]
Length = 430
Score = 133 bits (334), Expect = 4e-30
Identities = 85/227 (37%), Positives = 123/227 (53%), Gaps = 17/227 (7%)
Query: 171 LVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSN-------GHYYDSKA 223
L + D + ++Y Y GQ I A V ++ F + + G+YYD
Sbjct: 199 LKEGDAVRLIYDSLYFHGQQVAAGDILAAEVVKGGTRHQAFYYRSDKEGGGGGNYYDEDG 258
Query: 224 ---QEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRV 280
QE GF +E P+ YTRISSPF Y R HP+L R H G+DYAA G+ + +++DG +
Sbjct: 259 RVLQEKGGFNIE-PLVYTRISSPFGY-RMHPILHTWRLHTGIDYAAPQGTPVRASADGVI 316
Query: 281 GFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPH 339
F G K GYG V I H N + +YAH+SAF+ +G+ V+ G++IG VGSTG STGPH
Sbjct: 317 TFKGRKGGYGNAVMIRHANGVETLYAHLSAFSQA--EGN-VRGGEVIGFVGSTGRSTGPH 373
Query: 340 LHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLEEL 386
LH+ N +P+NP+ + +L + F + Q++ L L
Sbjct: 374 LHYEARINGQPVNPVS-VALPTPELTQADKAAFAAQKQKADALLARL 419
>ref|NP_273364.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||A81214 conserved hypothetical protein NMB0315 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40760.1| (AE002388) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 430
Score = 132 bits (332), Expect = 7e-30
Identities = 85/227 (37%), Positives = 123/227 (53%), Gaps = 17/227 (7%)
Query: 171 LVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSN-------GHYYDSKA 223
L + D + ++Y Y GQ I A V ++ F + + G+YYD
Sbjct: 199 LKEGDAVRLMYDSLYFHGQQVAAGDILAAEVVKGGTRHQAFYYRSDKEGGGGGNYYDEDG 258
Query: 224 ---QEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRV 280
QE GF +E P+ YTRISSPF Y R HP+L R H G+DYAA G+ + +++DG +
Sbjct: 259 KVLQEKGGFNIE-PLVYTRISSPFGY-RMHPILHTWRLHTGIDYAAPQGTPVRASADGVI 316
Query: 281 GFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPH 339
F G K GYG V I H N + +YAH+SAF+ +G+ V+ G++IG VGSTG STGPH
Sbjct: 317 TFKGRKGGYGNAVMIRHANGVETLYAHLSAFSQA--EGN-VRGGEVIGFVGSTGRSTGPH 373
Query: 340 LHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLEEL 386
LH+ N +P+NP+ + +L + F + Q++ L L
Sbjct: 374 LHYEARINGQPVNPVS-VALPTPELTQADKAAFAAQKQKADALLARL 419
>ref|NP_245180.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02327.1| (AE006058) unknown [Pasteurella multocida]
Length = 531
Score = 129 bits (324), Expect = 6e-29
Identities = 84/232 (36%), Positives = 125/232 (53%), Gaps = 6/232 (2%)
Query: 156 NQLMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSN 215
NQL NA + + KRL K DK A++ TR+Y G+ GQ + + S YY SN
Sbjct: 300 NQLANALQWQINLKRLKKGDKFAVLVTREYIEGKLTGQGNVDGIHIISAGKSYYAIQASN 359
Query: 216 GHYYDSKAQEVA-GFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHS 274
G YY+ + + + GF + R+SS F+ R HPV PH GVD+A G+ + +
Sbjct: 360 GRYYNRQGETLGKGFARYPLQRQARVSSHFNPYRRHPVTGRIAPHKGVDFAMPVGTPVIA 419
Query: 275 ASDGRVGFMGVKA-GYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGST 332
+DG V + +A G G+ + + H E + VY H+S +K G VK+GQ I G+T
Sbjct: 420 PADGIVEKVAYQANGAGRYIVVRHGREYQTVYMHLSRAL--VKAGQNVKRGQRIALSGNT 477
Query: 333 GLSTGPHLHFGVYKNSRPINPLGY-IRTAKSKLHGKQREVFLEKAQRSKQKL 383
G STGPHLH+ + N R +NPL + S + +R+ FL KA+ +++L
Sbjct: 478 GRSTGPHLHYEFHINGRAVNPLTVKLPGTSSGMGTAERKQFLVKAKEIERQL 529
>ref|NP_421828.1| (NC_002696) peptidase, M23/M37 family [Caulobacter crescentus CB15]
gb|AAK24996.1| (AE005966) peptidase, M23/M37 family [Caulobacter crescentus CB15]
Length = 458
Score = 128 bits (322), Expect = 1e-28
Identities = 80/251 (31%), Positives = 128/251 (50%), Gaps = 10/251 (3%)
Query: 142 YQDIIKATNDPLLANQLMNAYKKSVPFKRLVKN-DKIAIVYTRDY-RVGQAFGQPTIKMA 199
Y+ + P + +Q + + F R +K D+ +++ R G+ ++ A
Sbjct: 185 YESVANVGGTPAVISQAAKLFSHKIDFSRDIKEGDRFCLIFDRKVTESGRTIEAGDLEYA 244
Query: 200 MVSSRSNQYYLFS----HSNGHYYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKV 255
V + ++Y F + N ++D + + GFLL TPV RI+S F R HP+L
Sbjct: 245 EV--KGQKFYAFDRKGENGNSQFFDETGKNIKGFLLRTPVDGARITSKFGLRR-HPILGY 301
Query: 256 RRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGL 314
R H GVD+ A G+ I +A DG V AGYG + I H + YAH+S +A G+
Sbjct: 302 NRAHQGVDFGAGTGTPILAAGDGVVLEARRWAGYGNWLRIRHSGQWDTGYAHISRYAKGI 361
Query: 315 KKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLE 374
K G+ V++GQ++ VGSTG+S+GPHLH+ V+ + +NP+G + L G + F
Sbjct: 362 KPGTRVRQGQVVAYVGSTGMSSGPHLHYEVWLKGQRVNPIGAKVPQGTILAGAELASFRS 421
Query: 375 KAQRSKQKLEE 385
+ R + L E
Sbjct: 422 QKARIDRMLAE 432
>gb|AAG10461.1|AF279106_23 (AF279106) predicted metallopeptidase of the G-G peptidase family
[uncultured proteobacterium EBAC31A08]
Length = 417
Score = 124 bits (311), Expect = 2e-27
Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 5/221 (2%)
Query: 173 KNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYY----LFSHSNGHYYDSKAQEVAG 228
+ D+ ++Y Y G+ I +A + N Y+ S Y+D +
Sbjct: 190 EGDEFHVIYDTPYSDGEKVKNGDIVIAKFINNGNTYFANRFFTEASKKQYFDENGNNMQK 249
Query: 229 FLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG 288
L P+ + ISS F+ R HPVL R H GVDYAAK GS + + DG V F G + G
Sbjct: 250 AFLRAPLDFAYISSHFNPNRMHPVLHTIRAHNGVDYAAKRGSPVRTTGDGIVSFSGQRNG 309
Query: 289 YGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKN 347
G + I H NE Y H+ F+ G++KG V +G IG VGS+GL+TGPHLH+
Sbjct: 310 CGNEIVINHTNEYSTRYCHLEKFSKGIRKGKKVSQGDTIGFVGSSGLATGPHLHYEFKIG 369
Query: 348 SRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLEELLK 388
+ I+P+ + + R F + +K +EE K
Sbjct: 370 KKRIDPIKVKLPSAEPVPKNLRASFDTLLKNNKLSMEEFNK 410
>ref|NP_644199.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM38735.1| (AE012039) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 472
Score = 119 bits (298), Expect = 6e-26
Identities = 77/233 (33%), Positives = 111/233 (47%), Gaps = 8/233 (3%)
Query: 162 YKKSVPF-KRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNG---- 216
+K + F K L D+ ++V +R G+ I A ++ Y F
Sbjct: 226 FKYDIDFDKDLQPGDRFSVVMDETWREGERISTGDILAATFTTGGKTYTGFRFERAGKPA 285
Query: 217 HYYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSAS 276
Y+D + + + PV Y+RISS F R HPVL R H GVDYAA G+ I +A
Sbjct: 286 EYFDINGRPLKKSFIRMPVAYSRISSTFG-ARKHPVLGTMRMHKGVDYAAASGTPIMAAG 344
Query: 277 DGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLS 335
D RV F+G + GYG VV + H +Y HMS F +K G + +G +IG VG TGL+
Sbjct: 345 DARVVFVGTQRGYGNVVILDHGKNYSTLYGHMSRFGK-IKAGQRINQGTVIGYVGMTGLA 403
Query: 336 TGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLEELLK 388
TGPHLH+ + NP+ L G + F + + ++E + K
Sbjct: 404 TGPHLHYEFRVGGQQRNPMSVTMPPPEPLQGVELAAFRAQTAPAMARIEGMEK 456
>ref|NP_639182.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM43073.1| (AE012505) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 472
Score = 119 bits (297), Expect = 8e-26
Identities = 77/233 (33%), Positives = 111/233 (47%), Gaps = 8/233 (3%)
Query: 162 YKKSVPF-KRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNG---- 216
+K + F K L D+ ++V +R G+ I A ++ Y F
Sbjct: 226 FKYDIDFDKDLQPGDRFSVVMDETWREGERISTGDILAATFTTGGKTYTGFRFERAGKPA 285
Query: 217 HYYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSAS 276
Y+D + + + PV Y+RISS F R HPVL R H GVDYAA G+ I +A
Sbjct: 286 EYFDITGRPLKKSFIRMPVAYSRISSTFG-ARKHPVLGTMRMHKGVDYAAASGTPIMAAG 344
Query: 277 DGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLS 335
D RV F+G + GYG VV + H +Y HMS F +K G + +G +IG VG TGL+
Sbjct: 345 DARVVFVGTQRGYGNVVILDHGKNYSTLYGHMSRFGK-VKAGQRINQGTVIGYVGMTGLA 403
Query: 336 TGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLEELLK 388
TGPHLH+ + NP+ L G + F + + ++E + K
Sbjct: 404 TGPHLHYEFRVGGQQRNPMSVTMPPPEPLQGAELAAFRAQTAPAMARIEGMEK 456
>ref|NP_297460.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||C82840 conserved hypothetical protein XF0167 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF82980.1|AE003870_6 (AE003870) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 417
Score = 119 bits (297), Expect = 8e-26
Identities = 75/216 (34%), Positives = 104/216 (47%), Gaps = 7/216 (3%)
Query: 162 YKKSVPF-KRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYY---LFSHSNGH 217
+K + F K L D+ ++V +R G+ I A ++ Y
Sbjct: 168 FKYDIDFDKDLQTGDRFSVVMDETWREGERLPDAKILAATFNTGGKIYSGMRFMRDGKVE 227
Query: 218 YYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASD 277
Y+D + + + P+ Y R+SS F R HP+L R H GVDYAA G+ I +A D
Sbjct: 228 YFDKDGRPLKKSFIRMPISYARLSSTFGLRR-HPILGTMRMHKGVDYAAATGTPIMAAGD 286
Query: 278 GRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLST 336
RV F+G + GYG VV + H R +Y HMS F +K G + +G +IG VG TGL+T
Sbjct: 287 ARVQFIGQQRGYGNVVILNHGKGYRTLYGHMSRFGK-IKAGQKINQGTVIGYVGMTGLAT 345
Query: 337 GPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVF 372
GPHLH+ N + NPL L GK F
Sbjct: 346 GPHLHYEFQVNGQHRNPLSITMPPPEPLRGKDLIAF 381
>ref|NP_540185.1| (NC_003317) LYSOSTAPHIN [Brucella melitensis]
gb|AAL52449.1| (AE009565) LYSOSTAPHIN [Brucella melitensis]
Length = 472
Score = 118 bits (295), Expect = 1e-25
Identities = 71/188 (37%), Positives = 101/188 (52%), Gaps = 3/188 (1%)
Query: 201 VSSRSNQYYLFSHSNG-HYYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPH 259
++ RS + Y S G Y++ + +L+ P+ R++ F + R HPVL VR+ H
Sbjct: 265 INGRSKRLYRHEGSGGVDYFNEDGSPMTKYLMHKPLPNGRLNDGFGW-RIHPVLHVRKHH 323
Query: 260 YGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
GVDY A GS I +A DG V + + GYGK V I H YAH+SA A GLK G
Sbjct: 324 NGVDYDAPLGSPIVAAGDGVVDLISWQKGYGKYVRIRHQGGYSTTYAHLSAEAKGLKVGK 383
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQR 378
VK+G++I VGSTG STGPHL++ + + ++PL A KL G F E+
Sbjct: 384 HVKQGEVIAYVGSTGYSTGPHLYYELKVGDKYVDPLTARLNAGEKLTGSSLSSFREEISH 443
Query: 379 SKQKLEEL 386
+ + E+
Sbjct: 444 VGKIVNEM 451
>ref|NP_539115.1| (NC_003317) LYSOSTAPHIN [Brucella melitensis]
gb|AAL51379.1| (AE009462) LYSOSTAPHIN [Brucella melitensis]
Length = 651
Score = 110 bits (276), Expect = 2e-23
Identities = 68/183 (37%), Positives = 94/183 (51%), Gaps = 4/183 (2%)
Query: 199 AMVSSRSNQYYLFSHSNGH--YYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVR 256
A + ++Y + +G YY+ + FLL PV SPF R HP+L
Sbjct: 448 ATFGGTTRKFYRYQAPDGSVDYYNEDGKSAKQFLLRNPVPNGIFRSPFGMRR-HPILGYT 506
Query: 257 RPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLK 315
R H GVD+AA G+ I +A +G V G GYG I H N Y+H +A A G+
Sbjct: 507 RMHTGVDWAAPRGTPIIAAGNGVVEKAGWSNGYGNQTLIRHANGYVTSYSHQNAIARGIT 566
Query: 316 KGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEK 375
G+ V++GQ+IG VGSTGLSTGPHLH+ + N ++ L L GK+ E F ++
Sbjct: 567 PGARVRQGQVIGYVGSTGLSTGPHLHYELIVNGTKVDALRIRLPDNKALKGKEFEAFKQE 626
Query: 376 AQR 378
R
Sbjct: 627 RDR 629
>ref|NP_104528.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB50314.1| (AP003001) hypothetical protein [Mesorhizobium loti]
Length = 476
Score = 110 bits (274), Expect = 4e-23
Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 11/241 (4%)
Query: 154 LANQLMNAYKKSVPFK-RLVKNDKIAIVYTRDYRVGQAFGQPTIKM--AMVSSRSNQYYL 210
+ +L+ V F+ RL +D++ +++++ Q + A + +Y
Sbjct: 225 MTQRLIKLLASGVDFQSRLNPSDRLEVLFSQPDGDDQTSDDSELLYVSATFGGTTRNFYR 284
Query: 211 FSHSNGH--YYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKH 268
F +G Y+D FLL P+ R +S F R HP+L R H G D+AA
Sbjct: 285 FQMQDGSTDYFDEDGSSAQQFLLRNPLPNGRFTSGFG-ARKHPILGYVRMHTGTDWAAPI 343
Query: 269 GSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIG 327
GS I +A +G V G GYGK + + H N Y H SAFA G+ G V++GQ+IG
Sbjct: 344 GSPIIAAGNGVVEKAGWAGGYGKQIILRHANGYETSYNHQSAFAKGIAPGIRVRQGQVIG 403
Query: 328 RVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLEELL 387
+G TGLSTGPHLH+ + N ++ + L G F +R ++++++LL
Sbjct: 404 YLGQTGLSTGPHLHYELIVNGTKVDSMRVRLPVGKVLKGDDLVAF----KRERERIDDLL 459
Query: 388 K 388
K
Sbjct: 460 K 460
>ref|NP_623550.1| (NC_003869) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
gb|AAM25154.1| (AE013149) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
Length = 389
Score = 109 bits (272), Expect = 7e-23
Identities = 63/139 (45%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 221 SKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRV 280
SK + G LL I+SPF R HP+L R H G+D AA+ G+ I +A++G+V
Sbjct: 254 SKLKYSGGKLLWPVPSSGVITSPFGM-RLHPILGTSRMHTGIDIAAEMGADIVAAANGQV 312
Query: 281 GFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPH 339
F G GYG V I H + + +YAH SA +K+G VK+GQ+I ++GSTGLSTGPH
Sbjct: 313 IFSGYYGGYGYAVIIDHGDGISTLYAHCSALL--VKEGDTVKRGQVIAKIGSTGLSTGPH 370
Query: 340 LHFGVYKNSRPINPLGYIR 358
LHF V KN P+NP+ +++
Sbjct: 371 LHFEVRKNGVPVNPMDWLK 389
>ref|NP_356470.1| (NC_003063) AGR_L_1345p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534662.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK89255.1| (AE008266) AGR_L_1345p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44978.1| (AE009347) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 648
Score = 108 bits (271), Expect = 9e-23
Identities = 77/241 (31%), Positives = 118/241 (48%), Gaps = 12/241 (4%)
Query: 154 LANQLMNAYKKSVPFKRLVK-NDKIAIVYTRDYRVGQAFGQPTIKM--AMVSSRSNQYYL 210
+ +QL+ SV F+ +K D + ++ + G+A + + A ++Y
Sbjct: 401 MVSQLIKLLASSVDFQAQLKPTDTLEAFFSVEDADGKATDKSELLYVNAKFGDNETRFYR 460
Query: 211 FSHSNGH---YYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAK 267
F + Y+D + + FLL PV R++S F R HPVLK R H G D+AA
Sbjct: 461 FQSPEDNSVDYFDENGKSIRQFLLRNPVPNGRMTSGFGMRR-HPVLKFSRMHTGTDWAAA 519
Query: 268 HGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQII 326
G+ I + +G V G +GYG I H N Y H SA A G+ +GS V++GQ+I
Sbjct: 520 RGTPIIATGNGTVEKAGWASGYGNQTLIRHANGYVSSYNHQSAIAKGVTEGSKVRQGQVI 579
Query: 327 GRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLEEL 386
G VGSTGLSTG HLH+ + N ++ + L G V L + +++++ L
Sbjct: 580 GYVGSTGLSTGAHLHYELIVNGTKVDAMKVRLPGGKSLSG----VALARFSDERKRIDNL 635
Query: 387 L 387
L
Sbjct: 636 L 636
>ref|NP_103730.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB49516.1| (AP002999) hypothetical protein [Mesorhizobium loti]
Length = 812
Score = 107 bits (268), Expect = 2e-22
Identities = 66/192 (34%), Positives = 103/192 (53%), Gaps = 5/192 (2%)
Query: 173 KNDKIAIVYTRDYR-VGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVAGFLL 231
++ ++ ++Y++ R G+ G+ + ++ ++F S+G Y + L
Sbjct: 408 EDQRLVMIYSQTPRDQGEISGRVLYVGVLGKDKNLDCFVFQQSDGQYACVTGDDQVRSLN 467
Query: 232 ETPVKYTRISSPFS--YG-RFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG 288
T T ++ + +G R HP+L R H GVD+AA G+ + +A DG + F G
Sbjct: 468 VTNGMVTPVAGVMTSTFGPRKHPILGTVRIHKGVDWAAPVGTPVMAAFDGEISFQGDGGS 527
Query: 289 YGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKN 347
YG +V+I H N YAHM FA G+ VK G +IG +G+TGLSTGPHLHF +Y+N
Sbjct: 528 YGNLVKITHANGRETRYAHMQKFAIASGIGTKVKAGDVIGYIGTTGLSTGPHLHFELYEN 587
Query: 348 SRPINPLGYIRT 359
I+PLG + T
Sbjct: 588 GEAIDPLGTVTT 599
>ref|NP_230279.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||F82298 conserved hypothetical protein VC0630 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF93796.1| (AE004149) conserved hypothetical protein [Vibrio cholerae]
Length = 433
Score = 104 bits (259), Expect = 2e-21
Identities = 92/341 (26%), Positives = 153/341 (43%), Gaps = 28/341 (8%)
Query: 60 IPQKLYYNLSSQDKELSAEIQSNVTYYTLR---DANNTLIQALIPISQDLQIHIYKKGED 116
+ ++ Y L+S + +++ ++ + L+ D +N L+Q IS + +
Sbjct: 95 LSSRVLYELTSSNSDINNQLSKLMPKDELKFGFDKDNQLVQLKRTISPYETFVVTRSDSG 154
Query: 117 YFLDFIPIIFTRKEKTLLLSLQTSPYQDII--KATNDPLLANQLM---NAYKKSVPFKRL 171
+ +F +KE T L+ + L ANQ++ N + + F
Sbjct: 155 FTSEF-----DKKEVTFQLNYAEAKITSNFWNAGVTAGLSANQIIELANMFGWDIDFALD 209
Query: 172 VKN-DKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSN-GHYYDSKAQEVAGF 229
++ D+ ++Y G G+ I A ++ + + N G+YYD + +
Sbjct: 210 IREGDQFKLLYQEKIVEGSVIGRGNIIAATFINQGSTFTAILDDNTGNYYDQNGRAMKKA 269
Query: 230 LLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGY 289
L +P+ + R+SS F+ R HPV + H G DY A G+ I +A DG V
Sbjct: 270 FLRSPLDFRRVSSNFNPRRLHPVTGQIKAHRGTDYVAPVGTPIWAAGDGVVEKSSYNQFN 329
Query: 290 GKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF-----G 343
G V I H N Y H+ +K G VK+GQ IG +G TG TGPHLH+ G
Sbjct: 330 GNYVYIRHSNTYITKYLHLQRRL--VKTGERVKQGQTIGTLGGTGRVTGPHLHYEFLVNG 387
Query: 344 VYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLE 384
++KN R + + A+S L GK +E F+ A++ +KLE
Sbjct: 388 IHKNPRTVE----LPQAQS-LTGKAKETFIANAKQRMEKLE 423
>ref|NP_228219.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||G72380 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35494.1|AE001720_8 (AE001720) conserved hypothetical protein [Thermotoga maritima]
Length = 271
Score = 102 bits (255), Expect = 6e-21
Identities = 55/121 (45%), Positives = 73/121 (59%), Gaps = 3/121 (2%)
Query: 237 YTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIH 296
Y ISS F + R HP+ H GVD +A G+ I +A G V F G GYG +++I
Sbjct: 137 YGVISSGFGW-RIHPITGKYSFHSGVDISAPEGTPIFAAESGVVEFAGKNGGYGLMIKIK 195
Query: 297 LNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGY 356
+Y H+S + +G +VKKGQIIGRVG+TGLSTGPHLHF V N + +NP+ Y
Sbjct: 196 SASYEHIYGHLSQI--DVYEGQYVKKGQIIGRVGNTGLSTGPHLHFEVRVNQKAVNPINY 253
Query: 357 I 357
+
Sbjct: 254 L 254
>ref|NP_386713.1| (NC_003047) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
meliloti]
emb|CAC47186.1| (AL591791) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
meliloti]
Length = 646
Score = 102 bits (255), Expect = 6e-21
Identities = 68/194 (35%), Positives = 99/194 (50%), Gaps = 10/194 (5%)
Query: 199 AMVSSRSNQYYLFSHSNGH---YYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKV 255
A ++Y F + + Y+D + + FLL PV S F R HP+L
Sbjct: 448 AKFGDAETRFYRFQDPDDNSIDYFDKDGKSIRQFLLRNPVPNGHFRSGFGMRR-HPILGF 506
Query: 256 RRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG-YGKVVEI-HLNELRLVYAHMSAFANG 313
R H GVD++A G+ I +A +G V G +G YG I H N Y H SA A
Sbjct: 507 SRMHTGVDWSAPRGTPIIAAGNGVVQKAGWDSGGYGNQTLIRHANGYVSSYNHQSAIAKS 566
Query: 314 LKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFL 373
+K G+ V +GQ+IG VG+TGLSTGPHLH+ + N ++PL L G+ L
Sbjct: 567 VKPGTKVVQGQVIGWVGTTGLSTGPHLHYELIVNGNKVDPLRIRLPGGKSLGGEA----L 622
Query: 374 EKAQRSKQKLEELL 387
K ++ +++++ELL
Sbjct: 623 AKFEKERERIDELL 636
>ref|NP_662858.1| (NC_002932) peptidase, M23/M37 family [Chlorobium tepidum TLS]
gb|AAM73200.1| (AE012949) peptidase, M23/M37 family [Chlorobium tepidum TLS]
Length = 426
Score = 102 bits (254), Expect = 8e-21
Identities = 65/184 (35%), Positives = 95/184 (51%), Gaps = 9/184 (4%)
Query: 179 IVYTRDYRVGQAFGQPTIKMAMVSSRSNQY--YLFSHSNGH--YYDSK--AQEVAGFLLE 232
I++ Q G I +SS+ + YLF++ G YYD A +
Sbjct: 192 ILFQEQRNGSQFIGTGDILAVEISSKGRNFNAYLFTNDTGETAYYDENGWAMLQVRTMYI 251
Query: 233 TPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKV 292
P +Y+RISS F Y R HP+ H G+D A G+ + + +DGR+ F G G +
Sbjct: 252 QPCRYSRISSGFGY-RIHPITGRSEFHAGIDLVAPMGTPVFAVADGRIVFSGWYGYSGNM 310
Query: 293 VEI--HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRP 350
+ I ++ +Y H+S F+ + G+ VK+G+IIG VGSTG STGPHL F + KN +
Sbjct: 311 IAIAHDAGRIQTMYLHLSGFSPAVHYGNTVKQGEIIGYVGSTGRSTGPHLDFRIVKNGQW 370
Query: 351 INPL 354
NPL
Sbjct: 371 QNPL 374
>ref|NP_288293.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
gb|AAG56846.1|AE005408_4 (AE005408) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 419
Score = 100 bits (250), Expect = 2e-20
Identities = 72/222 (32%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 158 LMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH 217
++ A + + F++L K D+ A++ +R+ G+ Q + + S YY +G
Sbjct: 192 VIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKR-EQSQLLGVRLRSEGKDYYAIRAEDGK 250
Query: 218 YYDSKAQEVA-GFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSAS 276
+YD +A GFL K RISS F+ R +PV PH GVD+A G+ + S
Sbjct: 251 FYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVG 310
Query: 277 DGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLS 335
DG V G V I H Y H+ +K G VK+G I G+TG S
Sbjct: 311 DGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKIL--VKPGQKVKRGDRIALSGNTGRS 368
Query: 336 TGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQ 377
TGPHLH+ V+ N + +NPL L G R FL +A+
Sbjct: 369 TGPHLHYEVWINQQAVNPLTAKLPRTEXLTGSDRREFLAQAK 410
>pir||B42608 OrfU upstream of msbB - Escherichia coli (fragment)
gb|AAA24180.1| (M77039) orfU [Escherichia coli]
Length = 292
Score = 100 bits (249), Expect = 3e-20
Identities = 72/222 (32%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 158 LMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH 217
++ A + + F++L K D+ A++ +R+ G+ Q + + S YY +G
Sbjct: 65 VIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKR-EQSQLLGVRLRSEGKDYYAIRAEDGK 123
Query: 218 YYDSKAQEVA-GFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSAS 276
+YD +A GFL K RISS F+ R +PV PH GVD+A G+ + S
Sbjct: 124 FYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVG 183
Query: 277 DGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLS 335
DG V G V I H Y H+ +K G VK+G I G+TG S
Sbjct: 184 DGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKIL--VKPGQKVKRGDRIALSGNTGRS 241
Query: 336 TGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQ 377
TGPHLH+ V+ N + +NPL L G R FL +A+
Sbjct: 242 TGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAK 283
>ref|NP_310593.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_416370.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||H64947 membrane protein yebA - Escherichia coli
dbj|BAA15664.1| (D90828) Lysostaphin precursor (EC 3.5.1.-). [Escherichia coli]
gb|AAC74926.1| (AE000279) orf, hypothetical protein [Escherichia coli K12]
dbj|BAB35989.1| (AP002559) hypothetical protein [Escherichia coli O157:H7]
Length = 419
Score = 100 bits (249), Expect = 3e-20
Identities = 72/222 (32%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 158 LMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH 217
++ A + + F++L K D+ A++ +R+ G+ Q + + S YY +G
Sbjct: 192 VIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKR-EQSQLLGVRLRSEGKDYYAIRAEDGK 250
Query: 218 YYDSKAQEVA-GFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSAS 276
+YD +A GFL K RISS F+ R +PV PH GVD+A G+ + S
Sbjct: 251 FYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVG 310
Query: 277 DGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLS 335
DG V G V I H Y H+ +K G VK+G I G+TG S
Sbjct: 311 DGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKIL--VKPGQKVKRGDRIALSGNTGRS 368
Query: 336 TGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQ 377
TGPHLH+ V+ N + +NPL L G R FL +A+
Sbjct: 369 TGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAK 410
>sp|P24204|YEBA_ECOLI Hypothetical protein yebA precursor (ORFU)
Length = 440
Score = 100 bits (249), Expect = 3e-20
Identities = 72/222 (32%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 158 LMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH 217
++ A + + F++L K D+ A++ +R+ G+ Q + + S YY +G
Sbjct: 213 VIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKR-EQSQLLGVRLRSEGKDYYAIRAEDGK 271
Query: 218 YYDSKAQEVA-GFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSAS 276
+YD +A GFL K RISS F+ R +PV PH GVD+A G+ + S
Sbjct: 272 FYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVG 331
Query: 277 DGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLS 335
DG V G V I H Y H+ +K G VK+G I G+TG S
Sbjct: 332 DGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKIL--VKPGQKVKRGDRIALSGNTGRS 389
Query: 336 TGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQ 377
TGPHLH+ V+ N + +NPL L G R FL +A+
Sbjct: 390 TGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAK 431
>ref|NP_232480.1| (NC_002506) conserved hypothetical protein [Vibrio cholerae]
pir||E82502 conserved hypothetical protein VCA0079 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95993.1| (AE004351) conserved hypothetical protein [Vibrio cholerae]
Length = 430
Score = 100 bits (248), Expect = 4e-20
Identities = 71/231 (30%), Positives = 105/231 (44%), Gaps = 5/231 (2%)
Query: 156 NQLMNAYKKSVPFKR-LVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHS 214
+Q++ K + F R L + D+ +V +R + G I+ + +R + + H
Sbjct: 192 DQIVTLLKDKINFGRDLRRGDRFEVVLSRQLVGEKLTGNSEIQAIKIFNRGKEITAYLHQ 251
Query: 215 NGHYYDSKAQEVAGFLLETPVKYT-RISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIH 273
+G YYD + PV RISS F R HPV K PH G D+A G+ ++
Sbjct: 252 DGQYYDKNGDSLQRAFQRYPVDSKWRISSNFDPRRLHPVTKRVAPHNGTDFAMPIGTPVY 311
Query: 274 SASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGST 332
++ DG V G V I H N Y H+S +KKG V +GQ IG G+T
Sbjct: 312 TSGDGVVVMTRNHPYAGNYVVIQHGNTYMTRYLHLSKIL--VKKGQKVSRGQRIGLSGNT 369
Query: 333 GLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKL 383
G TGPHLH+ + RP+N + S + K+ F+ K + Q L
Sbjct: 370 GRVTGPHLHYELIVRGRPVNAMKANIPMASSVPKKEMAQFIAKRKELDQML 420
>ref|NP_405614.1| (NC_003143) putative M23/M37 peptidase-family protein [Yersinia
pestis]
emb|CAC90874.1| (AJ414151) putative M23/M37 peptidase-family protein [Yersinia
pestis]
Length = 417
Score = 99.4 bits (246), Expect = 7e-20
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 9/217 (4%)
Query: 161 AYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYD 220
A + + F +L K D+ A++ +R+ G++ + + M S YY +G +YD
Sbjct: 193 ALQWQLDFSKLRKGDQFAVLMSREMLDGRSEQSQLVGVRMRSG-GKDYYAIRAEDGKFYD 251
Query: 221 SKAQEVA-GFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGR 279
+ +A GFL +K R+SS F+ R +PV PH GVD+A G+ + + DG
Sbjct: 252 RQGSGLARGFLRFPTLKQFRVSSNFNPRRLNPVTGRIAPHKGVDFAMPVGTPVLAVGDGE 311
Query: 280 V---GFMGVKAGYGKVVEIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLST 336
V F G Y VV H + Y H+ +K G VK+G I G+TG ST
Sbjct: 312 VLISKFSGAAGNY--VVIRHGRQYTTHYMHLKKLL--VKPGQKVKRGDRIALSGNTGRST 367
Query: 337 GPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFL 373
GPHLH+ + N + +NPL L GK R +L
Sbjct: 368 GPHLHYEFWMNQQAVNPLTAKLPRSEGLSGKDRSEYL 404
>ref|NP_456457.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD05641.1| (AL627272) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 439
Score = 95.9 bits (237), Expect = 7e-19
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 158 LMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH 217
++ A + + F++L K D+ +++ +R+ G+ + + M S YY ++G
Sbjct: 212 VIKAMQWQMDFRKLKKGDEFSVLMSREMLDGKREQSQLLGVRMRSD-GKDYYAIRAADGK 270
Query: 218 YYDSKAQEVA-GFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSAS 276
+YD +A GFL K RISS F+ R +PV PH GVD+A G+ + S
Sbjct: 271 FYDRNGVGLAKGFLRFPTAKQFRISSNFNPRRLNPVTGRVAPHRGVDFAMPQGTPVLSVG 330
Query: 277 DGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLS 335
DG V G + I H Y H+ +K G VK+G I G+TG S
Sbjct: 331 DGEVVVAKRSGAAGYYIAIRHGRTYTTRYMHLRKLL--VKPGQKVKRGDRIALSGNTGRS 388
Query: 336 TGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQ 377
TGPHLH+ V+ N + +NPL L G R +L + +
Sbjct: 389 TGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREYLAQVK 430
>ref|NP_460847.1| (NC_003197) putative Peptidase [Salmonella typhimurium LT2]
gb|AAL20806.1| (AE008784) putative Peptidase [Salmonella typhimurium LT2]
Length = 439
Score = 95.9 bits (237), Expect = 7e-19
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 158 LMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGH 217
++ A + + F++L K D+ +++ +R+ G+ + + M S YY ++G
Sbjct: 212 VIKAMQWQMDFRKLKKGDEFSVLMSREMLDGKREQSQLLGVRMRSD-GKDYYAIRAADGK 270
Query: 218 YYDSKAQEVA-GFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSAS 276
+YD +A GFL K RISS F+ R +PV PH GVD+A G+ + S
Sbjct: 271 FYDRNGVGLAKGFLRFPTAKQFRISSNFNPRRLNPVTGRVAPHRGVDFAMPQGTPVLSVG 330
Query: 277 DGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLS 335
DG V G + I H Y H+ +K G VK+G I G+TG S
Sbjct: 331 DGEVVVAKRSGAAGYYIAIRHGRTYTTRYMHLRKLL--VKPGQKVKRGDRIALSGNTGRS 388
Query: 336 TGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQ 377
TGPHLH+ V+ N + +NPL L G R +L + +
Sbjct: 389 TGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREYLAQVK 430
>gb|EAA02262.1| (AAAB01003334) ebiP1481 [Anopheles gambiae str. PEST]
Length = 360
Score = 95.9 bits (237), Expect = 7e-19
Identities = 88/327 (26%), Positives = 144/327 (43%), Gaps = 11/327 (3%)
Query: 64 LYYNLSSQDKELSAEIQSNVTYYTLRDANNTLIQALIPISQDLQIHIYKKGEDYFLDFIP 123
LY L + K A ++ T L D +N L Q I ++ + + + + Y + +
Sbjct: 39 LYKVLDADTKNNLARLKPGQTIELLIDQDNILQQMKIRLNIKQTLILERTDDTYSANMLN 98
Query: 124 IIFTRKEKTLLLSLQTSPYQDIIKATNDPLLANQLM---NAYKKSVPF-KRLVKNDKIAI 179
++K + S Y + A N + AN + N ++ + F K L K DK +
Sbjct: 99 EEVEWQKKGYDGVINGSFY---VSARNAGIPANHIQKIANLFQWRLNFAKDLKKGDKFKV 155
Query: 180 VYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVA-GFLLETPVKYT 238
+ ++ G++ G + V S+ + +G+YYD + + GF
Sbjct: 156 LVRQETVEGKSTGNTQLLGVEVFSQGQSVSAWLSEDGNYYDGQGNSLERGFRRYPTHSRY 215
Query: 239 RISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HL 297
R+SS F+ R HP+ RPH G D+A G+ + + DG V G V I H
Sbjct: 216 RVSSSFNPNRRHPITGQVRPHEGTDFALPVGTPVMATGDGVVLKATSHPLAGTYVVIKHG 275
Query: 298 NELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
L Y H+S +K G VK G I G+TG STG HLH+ V N+RP++ +
Sbjct: 276 RTLMTRYLHLSKLL--VKPGQKVKMGDKIALSGNTGRSTGAHLHYEVRINNRPVDAMKVK 333
Query: 358 RTAKSKLHGKQREVFLEKAQRSKQKLE 384
L GK++ FL K + ++++E
Sbjct: 334 LPMAEPLSGKEKRQFLAKVKSYRKEME 360
>ref|NP_603374.1| (NC_003454) Cell wall endopeptidase family M23/M37 [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94673.1| (AE010559) Cell wall endopeptidase family M23/M37 [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 321
Score = 94.4 bits (233), Expect = 2e-18
Identities = 54/126 (42%), Positives = 75/126 (58%), Gaps = 5/126 (3%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVV 293
PV+Y I+SPF R+HPVLK H GVD AK+ L ++ G V F G +GYGK++
Sbjct: 200 PVRYAGITSPFG-NRYHPVLKRYILHTGVDLVAKYVPL-RASKAGVVTFAGNMSGYGKII 257
Query: 294 EI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPIN 352
I H N YAH+S + + G V KG +IG+ G++G +TG HLHF + N P N
Sbjct: 258 IIKHDNGYETRYAHLSVISTNV--GEHVNKGDLIGKTGNSGRTTGAHLHFEIRHNGVPKN 315
Query: 353 PLGYIR 358
P+ Y++
Sbjct: 316 PMKYLQ 321
>ref|NP_253094.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||E83093 hypothetical protein PA4404 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAF26458.1| (U19797) hypothetical protein [Pseudomonas aeruginosa]
gb|AAG07792.1|AE004856_3 (AE004856) hypothetical protein [Pseudomonas aeruginosa]
Length = 307
Score = 92.4 bits (228), Expect = 8e-18
Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 229 FLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG 288
+L PV+ ISSPF R +PV H G+D+AA GS + + + G V + G K G
Sbjct: 174 YLAGQPVRQGYISSPFGR-RVNPVSGRLSMHKGIDFAAPAGSDVVAVAAGVVTWSGRKNG 232
Query: 289 YGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKN 347
YG VVE+ H + +YAH N ++ G VK+GQ++ +VGSTG STG H+HF V K+
Sbjct: 233 YGNVVEVGHADGYTTLYAHNQK--NLVEVGDLVKRGQVLAKVGSTGRSTGYHVHFEVMKD 290
Query: 348 SRPINPLGYIRTA 360
R +NP +I A
Sbjct: 291 GRVMNPQSFIARA 303
>ref|NP_562530.1| (NC_003366) probable cell wall-binding protein [Clostridium
perfringens]
dbj|BAB81320.1| (AP003191) probable cell wall-binding protein [Clostridium
perfringens]
Length = 441
Score = 91.3 bits (225), Expect = 2e-17
Identities = 57/147 (38%), Positives = 77/147 (51%), Gaps = 7/147 (4%)
Query: 212 SHSNGHYYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSL 271
S SN ++KA +GF+ P ++ PF R HPV R H G D A +G+
Sbjct: 300 SSSNEGNSETKANSSSGFMRPAP---GGVTDPFG-PRVHPVTGKRSVHTGADLGASYGTP 355
Query: 272 IHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVG 330
I ++ G V G YG +V I H + +Y H S A ++ G V +GQ+I VG
Sbjct: 356 ILASKSGTVVEAGWNTAYGNMVIIDHGDGTSTLYGHSSRLA--VQAGQHVSQGQVIAYVG 413
Query: 331 STGLSTGPHLHFGVYKNSRPINPLGYI 357
STG STGPHLHFG+ N +NP+ YI
Sbjct: 414 STGYSTGPHLHFGIMINGEWVNPMNYI 440
>ref|NP_208334.1| (NC_000915) toxR-activated gene (tagE) [Helicobacter pylori 26695]
pir||G64712 toxR-activated gene - Helicobacter pylori (strain 26695)
gb|AAD08582.1| (AE000652) toxR-activated gene (tagE) [Helicobacter pylori 26695]
Length = 312
Score = 90.5 bits (223), Expect = 3e-17
Identities = 48/125 (38%), Positives = 76/125 (60%), Gaps = 6/125 (4%)
Query: 237 YTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFM--GVKAGYGKVVE 294
Y R+S+ F+ R HP+L V H G+D + + +++++ G VG G GYG +++
Sbjct: 148 YRRVSAAFNK-RIHPILHVLHNHTGLDLSTAINTPVYASASGVVGLASKGWNGGYGNLIK 206
Query: 295 I-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINP 353
+ H + YAH++ +K G FVKKGQ+IG G+TG+STGPHLH+ V +PINP
Sbjct: 207 VFHPFGFKTYYAHLNKIV--VKTGEFVKKGQLIGYSGNTGMSTGPHLHYEVRFLDQPINP 264
Query: 354 LGYIR 358
+ + +
Sbjct: 265 MSFTK 269
>ref|NP_624857.1| (NC_003888) possible peptidase [Streptomyces coelicolor A3(2)]
emb|CAB59600.1| (AL132662) possible peptidase [Streptomyces coelicolor A3(2)]
Length = 378
Score = 90.5 bits (223), Expect = 3e-17
Identities = 57/134 (42%), Positives = 74/134 (54%), Gaps = 13/134 (9%)
Query: 227 AGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVK 286
AG LL PV I+SPF R HP+ V + H GVD+AA G+ + +A GRV F +
Sbjct: 241 AGALLTAPVSPLTITSPFG-SRQHPLTGVTKLHTGVDFAAPQGAQVVAARRGRVVFAALT 299
Query: 287 AGYGKVVEIHLNELR-----LVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLH 341
+ YG + I ++ Y+H+SA + G V+ G IGRVGSTGLSTGPHLH
Sbjct: 300 SAYGNRIVIDHGTIQGKRVETTYSHLSALETSV--GQTVEAGAPIGRVGSTGLSTGPHLH 357
Query: 342 F-----GVYKNSRP 350
F G Y + RP
Sbjct: 358 FEVILDGYYTDPRP 371
>ref|NP_224174.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71806 hypothetical protein jhp1456 - Helicobacter pylori (strain J99)
gb|AAD07032.1| (AE001567) putative [Helicobacter pylori J99]
Length = 312
Score = 90.5 bits (223), Expect = 3e-17
Identities = 48/125 (38%), Positives = 76/125 (60%), Gaps = 6/125 (4%)
Query: 237 YTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFM--GVKAGYGKVVE 294
Y R+S+ F+ R HP+L V H G+D + + +++++ G VG G GYG +++
Sbjct: 148 YRRVSAAFNK-RMHPILHVLHNHTGLDLSTAINTPVYASASGVVGLASKGWNGGYGNLIK 206
Query: 295 I-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINP 353
+ H + YAH++ +K G FVKKGQ+IG G+TG+STGPHLH+ V +PINP
Sbjct: 207 VFHPFGFKTYYAHLNKIV--VKTGEFVKKGQLIGYSGNTGMSTGPHLHYEVRFLDQPINP 264
Query: 354 LGYIR 358
+ + +
Sbjct: 265 MSFTK 269
>ref|NP_478319.1| (NC_003240) ORF_ID:all7672~similar to peptidase [Nostoc sp. PCC
7120]
dbj|BAB77315.1| (AP003602) ORF_ID:all7672~similar to peptidase [Nostoc sp. PCC
7120]
Length = 216
Score = 90.5 bits (223), Expect = 3e-17
Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 238 TRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-H 296
T ++S F + R HP+ R+ H G+D+ A G+ I++ GRV F G K GYGK V I H
Sbjct: 92 TPVTSEFGW-RTHPITGDRKFHRGIDFGAAKGTPIYAVDAGRVVFAGDKDGYGKAVIIQH 150
Query: 297 LNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGY 356
L +Y H S +++G V +GQ+I VGSTG STGPHLHF V N NP Y
Sbjct: 151 QGSLSTLYGHASQLY--VQQGQQVVRGQMIAAVGSTGFSTGPHLHFEVQINGVAQNPRPY 208
Query: 357 I 357
+
Sbjct: 209 L 209
>ref|NP_660653.1| (NC_004061) hypothetical 46.7 kD protein in msbB-ruvB [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM67864.1| (AE014107) hypothetical 46.7 kD protein in msbB-ruvB [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 415
Score = 90.1 bits (222), Expect = 4e-17
Identities = 70/289 (24%), Positives = 138/289 (47%), Gaps = 25/289 (8%)
Query: 107 QIHIYKKGEDYFLDFIPIIFTR--KEKTLLLSLQTSPYQDIIKATNDPLLANQLMNAYKK 164
Q IYK+ ++ F FI + ++K++ + ++ ++ ++ + N ++ A +
Sbjct: 141 QKKIYKRYKNTF-KFIKYTYDSFLEKKSIYIKKNSNFFKSAYQSGLNKSEINSVIKAIEW 199
Query: 165 SVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDS--- 221
+ F +L K +++ + + + + + +Y+ NG +YDS
Sbjct: 200 QINFNKLHIGSKFNVIFLNQ----KTKNKKILLGVKLDNLDRKYFSIRAFNGKFYDSDGF 255
Query: 222 -KAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRV 280
K++E+ F +K RISSPF+ R +PV H G+D A G+ + + S G++
Sbjct: 256 NKSEELINFSF---LKKYRISSPFNLRRVNPVTHRISRHLGIDLAMPQGTPVIATSSGKI 312
Query: 281 GFMGVKAGYGKVVEIHL-----NELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLS 335
+KA + K+ ++ N Y H+ +K G +KKG+ I G+TG +
Sbjct: 313 ----IKAQFNKIAGFYISLKNKNYYTTRYMHLKKIL--VKVGQKIKKGEKIALSGNTGRT 366
Query: 336 TGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLE 384
TGPHLH+ ++ N R INP+ ++L +R +L++++ KL+
Sbjct: 367 TGPHLHYEIWINHRAINPIKAEYILSTQLTKSERIKYLKESKNILSKLK 415
>ref|NP_422095.1| (NC_002696) peptidase, M23/M37 family [Caulobacter crescentus CB15]
gb|AAK25263.1| (AE005992) peptidase, M23/M37 family [Caulobacter crescentus CB15]
Length = 222
Score = 89.0 bits (219), Expect = 9e-17
Identities = 48/126 (38%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 229 FLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG 288
F+ + P+ I+SPF R P + R H GVD AA G+ + A+ G V GV A
Sbjct: 17 FVFDAPLPGRVINSPFGL-RQMPWEESGRLHQGVDIAAPAGAAVKVAAPGVVKATGVSAT 75
Query: 289 YGK-VVEIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKN 347
YG+ V+ +H L +YAH++ A +K+G+++++G I+ VG++G S+G HLHF + K
Sbjct: 76 YGRYVLVVHKGGLSTLYAHLARPARSVKRGAYLRRGDIVAFVGNSGRSSGSHLHFEIRKG 135
Query: 348 SRPINP 353
+P+NP
Sbjct: 136 DKPLNP 141
>ref|NP_212895.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
pir||H70194 conserved hypothetical protein BB0761 - Lyme disease spirochete
gb|AAC67117.1| (AE001176) conserved hypothetical protein [Borrelia burgdorferi]
Length = 295
Score = 88.2 bits (217), Expect = 2e-16
Identities = 77/272 (28%), Positives = 129/272 (47%), Gaps = 24/272 (8%)
Query: 101 PISQDLQIHI--YKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQDIIKATNDPLLANQL 158
P+ DL+I + Y K + L F + + ++ + + +Q I N L
Sbjct: 34 PVFSDLKIKVLKYNKKQHIPLFFYSYKVKKGDTFFKIANKINGWQSGIATIN-------L 86
Query: 159 MNAYKKSVPFKRLVKNDKIAIVY-TRDYRVGQAF--GQPTIKMAMVSSRSN----QYYLF 211
+++ SV + L+ + K V+ ++DYR + K V + N ++Y F
Sbjct: 87 LDSPAVSVGQEILIPSKKGVFVFDSKDYRFNNLLLATRDLAKAEKVKIKRNDRVYEFYFF 146
Query: 212 SH-SNGHYYDSKAQEVAGFLLET---PVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAK 267
N + E+ FL P+K +SS F + R P + H G+D AA
Sbjct: 147 DFVKNPDFGLFSGTELLFFLNANFIFPLKKFIVSSDFGF-RNDPFTGNKSFHTGIDLAAP 205
Query: 268 HGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQII 326
+ ++S+S G V G YG V + H N ++ +Y H++ ++ +K G FVK G+ +
Sbjct: 206 MNAEVYSSSSGIVIEAGYNDLYGNFVVVGHKNNIKSLYGHLNLYS--VKIGDFVKSGEFL 263
Query: 327 GRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR 358
G VG TG +TGPHLHF + K + PINPL +++
Sbjct: 264 GXVGQTGRATGPHLHFEILKKNIPINPLKFLK 295
>ref|NP_624206.1| (NC_003869) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
gb|AAM25810.1| (AE013208) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
Length = 449
Score = 87.4 bits (215), Expect = 3e-16
Identities = 82/289 (28%), Positives = 133/289 (45%), Gaps = 44/289 (15%)
Query: 78 EIQSNVTYYTLRDANNTLIQALIPISQDLQIHIYKKGEDYFLDFIPIIFTRKEKTLLLSL 137
E++ N + +++ ++ IQ ++ ++ L ++ Y +P++ EK +
Sbjct: 194 EVKENDSLWSIAREHDMYIQDILKLNPGLTENLKPGQIIYLSKEVPLVTVVTEKEVTYK- 252
Query: 138 QTSPYQDIIKATNDPLLANQLMNAYKKSVPFKRLVKNDKIAIV------YTRDYRVGQAF 191
+ P+ K T D L +N K V ++ +K K ++ RD + +
Sbjct: 253 EEIPFNT--KFTKDDKL---FVNQSKVLVEGEKGLKEIKAVVISHNGVEVKRDIKEERVL 307
Query: 192 GQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVAGFLLETPVKYTRISSPFS--YGRF 249
+P K+ V SR Y VA P + T I+S F +G F
Sbjct: 308 KEPISKIVAVGSRRVSY-----------------VATGYFSYPARGT-ITSRFGPRWGGF 349
Query: 250 HPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMS 308
H GVD AA++GS I+++ G V F G ++GYG +V+I H N Y H S
Sbjct: 350 HT---------GVDIAARYGSPIYASDGGTVIFAGWESGYGYLVKIDHHNGYVTYYGHAS 400
Query: 309 AFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+K G V+KGQ I VG+TG +TGPH+HF V KN PI+P+ ++
Sbjct: 401 KLL--VKVGDKVEKGQKIALVGATGHATGPHVHFEVRKNGVPIDPMRFL 447
>ref|NP_230154.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||F82315 conserved hypothetical protein VC0503 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF93673.1| (AE004136) conserved hypothetical protein [Vibrio cholerae]
Length = 426
Score = 87.0 bits (214), Expect = 3e-16
Identities = 67/237 (28%), Positives = 102/237 (42%), Gaps = 9/237 (3%)
Query: 146 IKATNDPLLANQLMN---AYKKSVPFKRLVK-NDKIAIVYTRDYRVGQAFGQPTIKMAMV 201
+ A L ++Q+ N K + F R ++ D+ I+ + Y G IK
Sbjct: 172 VSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILVKQQYLGEHNTGNSEIKAISF 231
Query: 202 SSRSNQYYLFSHSNGHYYDSKAQEVAGFLLETPVK--YTRISSPFSYGRFHPVLKVRRPH 259
F +G +YD + PV Y +I+S F+ R HPV PH
Sbjct: 232 KLAKGDVSAFLAEDGRFYDRAGNSLERAFNRYPVDKAYRQITSGFNPKRKHPVTGRVVPH 291
Query: 260 YGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNEL-RLVYAHMSAFANGLKKGS 318
G D+A G+ ++S DG+V + G + I N + + Y H+ +KKG
Sbjct: 292 NGTDFATPIGAPVYSTGDGKVIVVRKHPYAGNYLVIEHNSVYKTRYLHLDKIL--VKKGQ 349
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEK 375
VK+GQ I G+TG TGPHLHF V +RP++ + L Q+ FL +
Sbjct: 350 LVKRGQKIALAGATGRLTGPHLHFEVLVRNRPVDAMKADLPIAKSLSSNQKTSFLAR 406
>ref|NP_214447.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||B70481 hypothetical protein aq_2113 - Aquifex aeolicus
gb|AAC07844.1| (AE000773) putative protein [Aquifex aeolicus]
Length = 258
Score = 86.3 bits (212), Expect = 6e-16
Identities = 47/106 (44%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 254 KVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFAN 312
K + H GVD+ AK G L+++ G+V G G V + H L +YAH+S
Sbjct: 153 KRKSVHRGVDFRAKEGELVYAIMPGKVRLTGNFFFTGNTVIVEHGQGLYSLYAHLSEIL- 211
Query: 313 GLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR 358
+K+G VK G++IGR GSTG STGPHLH G+Y N P NPL +R
Sbjct: 212 -VKEGQLVKAGELIGRAGSTGRSTGPHLHLGLYLNGIPFNPLSLLR 256
>ref|NP_623660.1| (NC_003869) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
gb|AAM25264.1| (AE013157) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
Length = 571
Score = 85.9 bits (211), Expect = 8e-16
Identities = 54/137 (39%), Positives = 75/137 (54%), Gaps = 13/137 (9%)
Query: 232 ETPVKYTRISSPF--SYGRFHPVLKVRRP--------HYGVDYAAKHGSLIHSASDGRVG 281
E PVK +I PF +Y P P H G+D+ G+ + +A+DG V
Sbjct: 233 EFPVKGGKIIKPFDGNYPVTSPFGMRENPENPGSREFHPGIDFGLPSGTPVKAAADGVVV 292
Query: 282 FMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHL 340
G GYGK V I H + L VY H+S G +G VK+G++IG G+TG STG HL
Sbjct: 293 LAGEYGGYGKAVIIKHTDGLSTVYGHLSEIKVG--EGKEVKQGEVIGLSGNTGRSTGSHL 350
Query: 341 HFGVYKNSRPINPLGYI 357
HF + K+S+P++PL Y+
Sbjct: 351 HFEIRKDSQPVDPLQYL 367
>ref|NP_641139.1| (NC_003919) peptidase [Xanthomonas axonopodis pv. citri str. 306]
gb|AAM35675.1| (AE011709) peptidase [Xanthomonas axonopodis pv. citri str. 306]
Length = 313
Score = 85.1 bits (209), Expect = 1e-15
Identities = 51/125 (40%), Positives = 70/125 (55%), Gaps = 4/125 (3%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVV 293
P++ T I+S F GR P H GVD+ A G + S +DG V + GV+ GYG VV
Sbjct: 180 PIRNTYITSGFG-GRADPFDGGSAFHKGVDFHANVGDPVLSVADGVVSYAGVRGGYGNVV 238
Query: 294 EI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPIN 352
E+ H N YAH S +K G V+ GQ + R GS+G STG H+HF V+ + R +N
Sbjct: 239 EVDHGNGYVTRYAHNSRLV--VKVGDLVRAGQQVARAGSSGRSTGAHVHFEVWADGRVVN 296
Query: 353 PLGYI 357
P ++
Sbjct: 297 PRKFL 301
>ref|NP_282235.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||B81312 probable periplasmic protein Cj1087c [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73342.1| (AL139077) putative periplasmic protein [Campylobacter jejuni]
Length = 300
Score = 84.7 bits (208), Expect = 2e-15
Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKA-GYG-K 291
P++ I+ F + R HP+LK R H G+D A+ G+ I++ + G V F G GYG
Sbjct: 139 PIENKGITGNFGW-REHPLLKRREFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYN 197
Query: 292 VVEIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPI 351
V+ +H + V+AHM +K G FV KGQ+IG G+TGLSTGPHLH+ V ++ +
Sbjct: 198 VILLHNFGFKTVFAHMMR-KEVVKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTL 256
Query: 352 NPLGYIRTAKSKLH 365
PL ++ + ++
Sbjct: 257 EPLYFLNLQRKNMN 270
>ref|NP_219300.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||H71272 conserved hypothetical protein TP0864 - syphilis spirochete
gb|AAC65827.1| (AE001256) conserved hypothetical protein [Treponema pallidum]
Length = 546
Score = 84.3 bits (207), Expect = 2e-15
Identities = 50/132 (37%), Positives = 76/132 (56%), Gaps = 5/132 (3%)
Query: 224 QEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFM 283
++V G L P++ R S F Y R P R H G+D AA +G+ + + DG+V +
Sbjct: 414 RKVLGELFMYPIRGRRTSG-FGY-RSDPFSGKRSFHNGIDLAAPYGTQVKATLDGKVAEI 471
Query: 284 GVKAGYGK-VVEIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF 342
G YG ++ +H + +Y H+S+ G +G+ V +G IGRVG++G +TGPHLHF
Sbjct: 472 GYSRIYGNYLIIVHGGGYQTMYGHLSSVMVG--RGARVVQGTTIGRVGASGRATGPHLHF 529
Query: 343 GVYKNSRPINPL 354
V+KN +NPL
Sbjct: 530 SVFKNGSVVNPL 541
>ref|NP_622559.1| (NC_003869) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
gb|AAM24163.1| (AE013057) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
Length = 239
Score = 84.0 bits (206), Expect = 3e-15
Identities = 69/247 (27%), Positives = 118/247 (46%), Gaps = 25/247 (10%)
Query: 109 HIYKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQDIIKATNDPLLANQLMNAYKKSVPF 168
+ Y K +++ +I + E L++++ + KA + PL AN +N K
Sbjct: 3 YYYSKKINHYRKYIDLF----ENQLIIAMVLLGMVLLFKAIDVPL-ANSFINVTKS---- 53
Query: 169 KRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVAG 228
+ Y DY + G ++ + + N +FS + + +A + +
Sbjct: 54 ---------VLTYNMDYENTKK-GLKLVQSKIPWLKENVVKVFSQAEEKPFSKEAIQTSS 103
Query: 229 FLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG 288
++ PV+ RI+S F R P H G+D G+ + +A DG V K
Sbjct: 104 KMM-APVE-GRITSGFGE-RVDPFTNKVTKHTGIDIEVPVGTEVKAALDGVVMLATEKED 160
Query: 289 YGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKN 347
GKVV + H ++R VYAH+S +K+G +++G++IG+ G TG T PHLHF V++N
Sbjct: 161 LGKVVVLRHEGDVRTVYAHLSEIF--VKEGQQIRQGEVIGKSGDTGKVTAPHLHFEVWEN 218
Query: 348 SRPINPL 354
+PI+PL
Sbjct: 219 GKPIDPL 225
>ref|NP_561118.1| (NC_003366) probable cell wall-binding protein [Clostridium
perfringens]
dbj|BAB79908.1| (AP003185) probable cell wall-binding protein [Clostridium
perfringens]
Length = 399
Score = 84.0 bits (206), Expect = 3e-15
Identities = 55/133 (41%), Positives = 73/133 (54%), Gaps = 8/133 (6%)
Query: 227 AGFLLETPVKYTRISSPFSYG-RFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGV 285
+GF+ PV + I+S SYG R HPV + H GVD+AA G+ +A DG V
Sbjct: 273 SGFI--RPVSSSTITS--SYGPRVHPVTGQYKVHTGVDFAASTGTPFVAAKDGVVTAAEY 328
Query: 286 KAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGV 344
YG +V I H +YAH S + G VK+GQ++ VGSTG STGPH HF +
Sbjct: 329 HPAYGNMVIIDHGGGFSTLYAHASQLK--VSAGQKVKQGQVVSLVGSTGYSTGPHAHFEI 386
Query: 345 YKNSRPINPLGYI 357
N + +NP+ YI
Sbjct: 387 RINGQHVNPMDYI 399
>ref|NP_212396.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
pir||F70132 conserved hypothetical protein BB0262 - Lyme disease spirochete
gb|AAC66685.1| (AE001137) conserved hypothetical protein [Borrelia burgdorferi]
Length = 417
Score = 83.6 bits (205), Expect = 4e-15
Identities = 63/192 (32%), Positives = 95/192 (48%), Gaps = 17/192 (8%)
Query: 173 KNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHS----NGHYYDSKAQEVAG 228
KND I+ + A+ P + + ++ N+ G +EV G
Sbjct: 237 KNDSIS-------SIASAYNVPKVDILDSNNLDNEVLFLGQKLFIPGGRLPKDFLKEVLG 289
Query: 229 FLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG 288
PV+ I+S + Y R P V H G+D A + I ++ +G V G AG
Sbjct: 290 ETFIYPVQGV-ITSGYGY-RPDPFTGVISFHNGIDIANLANTPIKASREGVVVTAGFNAG 347
Query: 289 -YGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYK 346
YGK + I H N + +YAH+++FA +K G V +G +IG +GSTG STG HLHF ++K
Sbjct: 348 GYGKYIVISHSNGFQTLYAHLNSFA--VKVGKKVSRGAVIGYMGSTGYSTGNHLHFTIFK 405
Query: 347 NSRPINPLGYIR 358
N + NP+ Y+R
Sbjct: 406 NGKTENPMKYLR 417
>ref|NP_636124.1| (NC_003902) peptidase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gb|AAM40048.1| (AE012172) peptidase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
Length = 314
Score = 83.2 bits (204), Expect = 5e-15
Identities = 49/125 (39%), Positives = 70/125 (55%), Gaps = 4/125 (3%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVV 293
P++ T I+S F GR P H GVD+ A G + S +DG V + GV+ GYG VV
Sbjct: 180 PIRNTYITSGFG-GRADPFDGGSAFHKGVDFHANVGDPVMSVADGVVSYAGVRGGYGNVV 238
Query: 294 EI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPIN 352
E+ H N YAH S ++ G V+ GQ + + GS+G STG H+HF V+ + R +N
Sbjct: 239 EVDHGNGYVTRYAHNSRLV--VRVGDLVRAGQQVAKAGSSGRSTGAHVHFEVWADGRVVN 296
Query: 353 PLGYI 357
P ++
Sbjct: 297 PRKFL 301
>ref|NP_563527.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB82317.1| (AP003194) conserved hypothetical protein [Clostridium perfringens]
Length = 350
Score = 83.2 bits (204), Expect = 5e-15
Identities = 49/105 (46%), Positives = 60/105 (56%), Gaps = 3/105 (2%)
Query: 254 KVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFAN 312
K R H GVD A G+ I +A DG V F+G YG +V+I H + +YAH S
Sbjct: 247 KSRGGHRGVDIAVPSGTPIGAACDGVVSFVGYDDIYGNMVKIKHDDNTETLYAHASYILT 306
Query: 313 GLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
L G VKKG+ I +VGSTG STGPHLH + PINP+ YI
Sbjct: 307 EL--GKEVKKGETIAKVGSTGRSTGPHLHLELIYKGNPINPVDYI 349
>ref|NP_230491.1| (NC_002505) tagE protein [Vibrio cholerae]
pir||JC2569 tagE protein VC0843 [imported] - Vibrio cholerae (group O1 strain
N16961, strain 0395)
gb|AAA21435.1| (U07173) TagE [Vibrio cholerae]
gb|AAA82708.1| (U39068) hypothetical TagE [Vibrio cholerae]
gb|AAF94006.1| (AE004169) tagE protein [Vibrio cholerae]
gb|AAK20770.1|AF325733_26 (AF325733) unknown [Vibrio cholerae]
gb|AAK20800.1|AF325734_26 (AF325734) unknown [Vibrio cholerae]
Length = 302
Score = 82.0 bits (201), Expect = 1e-14
Identities = 47/127 (37%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKA-GYGKV 292
P+ +ISS + R HPV KV++ H+G+D+ A G+ I+S +DG V + V G G
Sbjct: 141 PIPDAKISSRYGE-RVHPVTKVKQIHHGIDFPAAIGTPIYSPADGVVEAIRVSTQGSGNF 199
Query: 293 VEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPI 351
+ + H Y+H+ F+ +K+G FVKKG++I G+TGLS+GPHLH+ + + +
Sbjct: 200 MRLQHTYGFSSSYSHLHKFS--VKEGDFVKKGELIAYSGNTGLSSGPHLHYEIRFLGKSL 257
Query: 352 NPLGYIR 358
+P +I+
Sbjct: 258 DPHPFIK 264
>ref|NP_471977.1| (NC_003212) similar to cell wall binding proteins [Listeria
innocua]
emb|CAC97874.1| (AL596173) similar to cell wall binding proteins [Listeria innocua]
Length = 437
Score = 80.9 bits (198), Expect = 2e-14
Identities = 53/125 (42%), Positives = 70/125 (55%), Gaps = 8/125 (6%)
Query: 240 ISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKA------GYGKVV 293
++S FS R +PV H G D A + +A+ GRV F G A GYG VV
Sbjct: 314 LTSGFSE-RTNPVTGKYESHKGQDIAGGGTITVSAAASGRVVFSGFGATGSGFGGYGYVV 372
Query: 294 EI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPIN 352
+I H N + +YAHM A + + G V +GQ IG +GSTG STG HLHF ++KN P++
Sbjct: 373 KIDHGNGFQTLYAHMRAGSLKVVTGQQVSQGQPIGIMGSTGQSTGQHLHFEIHKNGIPVD 432
Query: 353 PLGYI 357
P YI
Sbjct: 433 PAPYI 437
>ref|NP_420679.1| (NC_002696) peptidase, M23/M37 family [Caulobacter crescentus CB15]
gb|AAK23847.1| (AE005861) peptidase, M23/M37 family [Caulobacter crescentus CB15]
Length = 383
Score = 80.1 bits (196), Expect = 4e-14
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 245 SYG-RFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRL 302
SYG RF P + H G+D+ + + I + + G + F GV++GYGK VEI H +
Sbjct: 261 SYGVRFDPFTRRPAFHSGLDFPGGYHTPIMATAPGVISFTGVRSGYGKTVEIDHGGGFKT 320
Query: 303 VYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAK 361
YAH++A + ++ G V G +G +GSTG STGPHLH+ V+ N + NP +++ +
Sbjct: 321 RYAHLAAIS--VRVGQRVAIGSRVGGMGSTGRSTGPHLHYEVWVNGKAQNPNRFLKAGE 377
>ref|NP_354816.1| (NC_003062) AGR_C_3364p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_532512.1| (NC_003304) membrane protein associated metalloendopeptidase
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gb|AAK87601.1| (AE008103) AGR_C_3364p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL42828.1| (AE009138) membrane protein associated metalloendopeptidase
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 432
Score = 79.7 bits (195), Expect = 6e-14
Identities = 46/125 (36%), Positives = 68/125 (53%), Gaps = 4/125 (3%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVV 293
P I+S F R P L H G+D+ A+ G+ + S G+V GYG +V
Sbjct: 300 PAPGRAITSRFG-NRMDPFLGRPALHTGIDFRAETGADVKSTGAGKVTVAENSGGYGNMV 358
Query: 294 EI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPIN 352
EI H + + H+SA ++ G V+ G +IGR GSTG STGPH+H+ V +N P++
Sbjct: 359 EIDHGQGVSTRFGHLSAIL--VRAGDRVEAGDVIGRAGSTGRSTGPHVHYEVRRNDTPVD 416
Query: 353 PLGYI 357
P+ Y+
Sbjct: 417 PMRYL 421
>ref|NP_622494.1| (NC_003869) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
gb|AAM24098.1| (AE013050) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
Length = 301
Score = 79.3 bits (194), Expect = 7e-14
Identities = 46/118 (38%), Positives = 64/118 (53%), Gaps = 13/118 (11%)
Query: 242 SPFSYG-RFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNE 299
+PF YG FHP G+D + G+ + +A G V + G AGYGK V I H
Sbjct: 191 NPFGYGYEFHP---------GIDISVHIGTPVKAAGKGVVVYAGWLAGYGKAVIIDHGYG 241
Query: 300 LRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+ VY H S +K G V +G +I + G+TG STGPH+HF + N P+NP+ Y+
Sbjct: 242 IESVYGHNSQIL--VKVGQTVNRGDVIAKSGNTGRSTGPHVHFEIRANGSPVNPMKYL 297
>ref|NP_298095.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||E82760 conserved hypothetical protein XF0805 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83615.1|AE003920_6 (AE003920) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 319
Score = 79.0 bits (193), Expect = 9e-14
Identities = 47/125 (37%), Positives = 70/125 (55%), Gaps = 4/125 (3%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVV 293
PV+ + I+S F R P H GVD+ A GS + + +DG V + G + GYG VV
Sbjct: 181 PVRNSYITSNFGR-RADPFNGGVAEHKGVDFHASVGSSVMAVADGVVSYAGYRNGYGNVV 239
Query: 294 EI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPIN 352
++ H N YAH S +K G V+ GQ + + GS+G STG H+HF V+K+ +N
Sbjct: 240 DVDHSNGYLTRYAHNSRLT--VKVGDLVRTGQEVAKAGSSGRSTGAHVHFEVWKDGVVMN 297
Query: 353 PLGYI 357
P+ ++
Sbjct: 298 PIKFL 302
>ref|NP_214195.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||C70450 conserved hypothetical protein aq_1743 - Aquifex aeolicus
gb|AAC07601.1| (AE000754) hypothetical protein [Aquifex aeolicus]
Length = 425
Score = 79.0 bits (193), Expect = 9e-14
Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
H+G D A+ S + +++ GRV F G YG V I H L +Y+H++ F +K+G
Sbjct: 309 HWGYDLASVKNSPVEASNSGRVVFTGFLGIYGNTVIIDHGYGLMSIYSHLAEFR--VKEG 366
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPL 354
VKKGQIIG +TGL+ G HLHFG+ N P+NP+
Sbjct: 367 DIVKKGQIIGVTDTTGLAFGDHLHFGIMINGLPVNPI 403
>dbj|BAB19208.1| (AB052554) YebA [Shewanella violacea]
Length = 299
Score = 78.6 bits (192), Expect = 1e-13
Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVV 293
P++ +SSP+ R P R H G+D+A+K G+ + + + G + + G +GYG++V
Sbjct: 173 PIRKGWLSSPYGL-RNDPFSGRRTIHKGIDFASKEGTQVIATAAGVITWAGKMSGYGELV 231
Query: 294 EI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPIN 352
EI H N LR Y H + + + G V KG+ I +GSTG STGPH+H+ V + + I+
Sbjct: 232 EIDHGNGLRTRYGHNQSLS--VTVGDVVAKGEGIAFMGSTGRSTGPHVHYEVLRGGQAID 289
Query: 353 PLGYI 357
P ++
Sbjct: 290 PKKFV 294
>ref|NP_466027.1| (NC_003210) similar to cell wall binding proteins [Listeria
monocytogenes EGD-e]
emb|CAD00582.1| (AL591983) similar to cell wall binding proteins [Listeria
monocytogenes]
Length = 436
Score = 77.8 bits (190), Expect = 2e-13
Identities = 69/207 (33%), Positives = 94/207 (45%), Gaps = 32/207 (15%)
Query: 169 KRLVKN-------DKIAIVYTRDYRVGQAFGQPTIKMAMV----SSRSNQYYLFSHSNGH 217
KRL N + AI + R+ +A + K A V SS SN+ S G
Sbjct: 244 KRLASNIAGEKAKQEAAIKAAEEKRMQEAAAASSAKSAAVVKQPSSSSNEATETVSSGGG 303
Query: 218 YYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASD 277
+ A + ++S FS R +PV H G D A + +A+
Sbjct: 304 QFIKPASGI-------------LTSGFSE-RTNPVTGKYESHKGQDIAGGGTVTVSAAAS 349
Query: 278 GRVGFMGVKA------GYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVG 330
G V F G A GYG VV+I H N + +Y HM A + + G V +GQ IG +G
Sbjct: 350 GTVVFSGFGASGSGFGGYGYVVKIDHGNGFQTLYGHMRAGSLKVVTGQQVSQGQPIGIMG 409
Query: 331 STGLSTGPHLHFGVYKNSRPINPLGYI 357
STG STG HLHF ++KN P++P YI
Sbjct: 410 STGQSTGQHLHFEIHKNGIPVDPAPYI 436
>ref|NP_385850.1| (NC_003047) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
meliloti]
emb|CAC46323.1| (AL591788) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
meliloti]
Length = 413
Score = 77.4 bits (189), Expect = 3e-13
Identities = 47/129 (36%), Positives = 66/129 (50%), Gaps = 4/129 (3%)
Query: 231 LETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYG 290
L +P +SS F R P L H G D+ A G+ + + + G V G GYG
Sbjct: 278 LASPAPAADVSSGFG-NRLDPFLGRPALHAGTDFRAPTGTRVRATAGGTVTAAGPAGGYG 336
Query: 291 KVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSR 349
++EI H N + YAH+SA + G VK +I + GSTG STGPHLH+ V N
Sbjct: 337 NMIEIDHGNGVSTRYAHLSAIL--VNVGDAVKADAVIAKSGSTGRSTGPHLHYEVRLNGH 394
Query: 350 PINPLGYIR 358
++P ++R
Sbjct: 395 AVDPARFLR 403
>ref|NP_471052.1| (NC_003212) similar to minor capsid protein 1608 - Lactobacillus
phage phi-gle [Listeria innocua]
emb|CAC96947.1| (AL596169) similar to minor capsid protein 1608 - Lactobacillus phage
phi-gle [Listeria innocua]
Length = 1571
Score = 77.0 bits (188), Expect = 4e-13
Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNE-LRLVYAHMSAFANGLKKG 317
H G+DY A G+ + + G V F G G+G +++I + + + +Y H+S G
Sbjct: 1357 HKGIDYGAPTGTPLPAQHSGIVSFAGGAGGFGNLIKIKVAQGVETLYGHLSKILTS--SG 1414
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQ 368
+ V+ GQ IG VGSTG STGPH+H+ V N P+NP G K K G +
Sbjct: 1415 AVVRAGQTIGLVGSTGRSTGPHVHYQVNANGSPVNP-GSAIGGKKKASGSE 1464
>ref|NP_108647.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB54433.1| (AP003014) hypothetical protein [Mesorhizobium loti]
Length = 434
Score = 77.0 bits (188), Expect = 4e-13
Identities = 49/143 (34%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Query: 220 DSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGR 279
D +E L P ++SPF R P+L H G+D+ A G + G
Sbjct: 289 DQLKKEARQLPLSNPAPGHSVTSPFGV-RTDPILGTAALHSGMDFRAPIGMAAKVTAPGI 347
Query: 280 VGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGP 338
V G GYG++VE+ H N Y H+S + G + G IIG+ GS+G STGP
Sbjct: 348 VTKAGWNGGYGRMVEVDHGNGFATRYGHLSEI--DVTVGEKLDAGAIIGKTGSSGRSTGP 405
Query: 339 HLHFGVYKNSRPINPLGYIRTAK 361
HLH+ V N I+PL ++ K
Sbjct: 406 HLHYEVRHNGEAIDPLRFLTVGK 428
>ref|NP_296012.1| (NC_001263) cell wall glycyl-glycine endopeptidase, putative
[Deinococcus radiodurans]
pir||E75291 probable cell wall glycyl-glycine endopeptidase - Deinococcus
radiodurans (strain R1)
gb|AAF11838.1|AE002061_5 (AE002061) cell wall glycyl-glycine endopeptidase, putative
[Deinococcus radiodurans]
Length = 454
Score = 76.6 bits (187), Expect = 5e-13
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 237 YTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYG---KVV 293
Y RI+S F + + R H G+D AA G+ + +A GRV + YG VV
Sbjct: 331 YGRITSDFGW---RVLDGEREKHQGIDVAAPPGTPVIAARSGRVIQAHLDETYGWGWTVV 387
Query: 294 EIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINP 353
H + + YAH+S + ++ G V++G+ +G VGSTG TGPHLHFG+Y+N P NP
Sbjct: 388 IQHPDGWQTRYAHLSRIS--VEAGQLVRQGERVGAVGSTGRVTGPHLHFGLYRNWDPHNP 445
Query: 354 LGY 356
L +
Sbjct: 446 LAF 448
>ref|NP_372479.1| (NC_002758) phi PVL ORF 15 and 16 homologue [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB58117.1| (AP003364) phi PVL ORF 15 and 16 homologue [Staphylococcus aureus
subsp. aureus Mu50]
Length = 1509
Score = 76.3 bits (186), Expect = 6e-13
Identities = 39/106 (36%), Positives = 60/106 (55%), Gaps = 2/106 (1%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEIHLNELRLVYAHMSAFANGLKKG 317
H GVD+ + + + GR+ M + GYG V+I + +++AH+ F+ G
Sbjct: 1144 HEGVDFPFVYQE-VRTPMGGRLTRMPFMSGGYGNYVKITSGVIDMLFAHLKNFSKSPPSG 1202
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSK 363
+ VK G ++G G+TG STGPHLHF + +N R +P Y+R AK K
Sbjct: 1203 TMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDPEPYLRNAKKK 1248
>ref|NP_375064.1| (NC_002745) hypothetical protein [Bacteriophage phiN315]
[Staphylococcus aureus subsp. aureus N315]
dbj|BAB43043.1| (AP003135) hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
Length = 1509
Score = 76.3 bits (186), Expect = 6e-13
Identities = 39/106 (36%), Positives = 60/106 (55%), Gaps = 2/106 (1%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEIHLNELRLVYAHMSAFANGLKKG 317
H GVD+ + + + GR+ M + GYG V+I + +++AH+ F+ G
Sbjct: 1144 HEGVDFPFVYQE-VRTPMGGRLTRMPFMSGGYGNYVKITSGVIDMLFAHLKNFSKSPPSG 1202
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSK 363
+ VK G ++G G+TG STGPHLHF + +N R +P Y+R AK K
Sbjct: 1203 TMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDPEPYLRNAKKK 1248
>ref|NP_487316.1| (NC_003272) probable peptidase [Nostoc sp. PCC 7120]
dbj|BAB74975.1| (AP003592) ORF_ID:alr3276~probable peptidase [Nostoc sp. PCC 7120]
Length = 312
Score = 75.1 bits (183), Expect = 1e-12
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 20/143 (13%)
Query: 231 LETPVKYT--RISSPFSYGRFHPVLKVRRP----------HYGVDYAAKHGSLIHSASDG 278
L+TP KY + P + GR + VRR H G+DYA GS + + + G
Sbjct: 167 LQTPQKYWNGKFLRP-NNGRISTIYGVRRYYNGKFANDYYHRGLDYAGAAGSRVVAPAAG 225
Query: 279 RVGFMGVKAG----YGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTG 333
+V +G A +G V I H + ++ H++ +K+G VK GQ+IG VGSTG
Sbjct: 226 KVALVGTVAQGFRVHGNTVGIDHGQGVVSIFLHLNRI--NVKEGDLVKAGQLIGTVGSTG 283
Query: 334 LSTGPHLHFGVYKNSRPINPLGY 356
STGPHLH+G+Y N I+P +
Sbjct: 284 ASTGPHLHWGLYVNGLSIDPTSW 306
>ref|NP_214200.1| (NC_000918) lipoprotein NlpD fragment [Aquifex aeolicus]
pir||H70450 lipoprotein nlpD homolog [imported] - Aquifex aeolicus
gb|AAC07590.1| (AE000754) lipoprotein NlpD fragment [Aquifex aeolicus]
Length = 187
Score = 74.7 bits (182), Expect = 2e-12
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
H G+D AA G+ + + +DG V F G GYG V+ I H VYAH+S KG
Sbjct: 89 HAGIDIAAPTGTPVVATADGVVIFSGWVRGYGYVIVIYHGYGYTTVYAHLSGREG--YKG 146
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
V KG +IG +GSTG +TGPHLH+ V K NP+ Y+
Sbjct: 147 DLVAKGSVIGYIGSTGRATGPHLHYEVLKYGIRQNPILYL 186
>ref|NP_212380.1| (NC_001318) B. burgdorferi predicted coding region BB0246 [Borrelia
burgdorferi]
pir||F70130 hypothetical protein BB0246 - Lyme disease spirochete
gb|AAC66632.1| (AE001134) B. burgdorferi predicted coding region BB0246 [Borrelia
burgdorferi]
Length = 341
Score = 74.7 bits (182), Expect = 2e-12
Identities = 47/105 (44%), Positives = 62/105 (58%), Gaps = 5/105 (4%)
Query: 259 HYGVDYAA-KHGSLIHSASDGRVGFMGVK-AGYGKVVEI-HLNELRLVYAHMSAFANGLK 315
H G+D + G+ I + +DG V + AGYG V+I H L +YAHMS
Sbjct: 234 HKGIDLGGVRIGTPIVATADGEVVRASYQSAGYGNFVQIKHKYGLATLYAHMSRL--NTS 291
Query: 316 KGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTA 360
KGS+VKKGQIIG +G TG +TGPH+H+ V S+ INP Y+ A
Sbjct: 292 KGSYVKKGQIIGFMGQTGYATGPHVHYEVRVGSQVINPDMYLNLA 336
>ref|NP_218594.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||A71359 conserved hypothetical protein TP0155 - syphilis spirochete
gb|AAC65145.1| (AE001200) conserved hypothetical protein [Treponema pallidum]
Length = 371
Score = 74.7 bits (182), Expect = 2e-12
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 224 QEVAGFLLETPVKYTRISSPFSYG-RFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGF 282
QE+ G L P++ +R YG R P R H G+D ++ G+ ++SA G V
Sbjct: 233 QEINGDLFRAPLR-SRYYVSSRYGWRSDPFTGARSFHNGLDMVSRRGTPVYSALGGIVRT 291
Query: 283 MGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLH 341
+G A YG + + H + +Y H+ + G+ V IG +G TG STGPHLH
Sbjct: 292 VGYSAVYGNYLIVGHHAGYQTLYGHLQTVL--VSAGTRVTSATKIGLLGKTGRSTGPHLH 349
Query: 342 FGVYKNSRPINPLGYIR 358
F +YKN INP +R
Sbjct: 350 FTIYKNGSAINPTSLLR 366
>ref|NP_244467.1| (NC_002570) cell wall-binding protein [Bacillus halodurans]
dbj|BAB07319.1| (AP001519) cell wall-binding protein [Bacillus halodurans]
Length = 461
Score = 73.9 bits (180), Expect = 3e-12
Identities = 52/130 (40%), Positives = 72/130 (55%), Gaps = 15/130 (11%)
Query: 240 ISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIH--SASDGRVGFMGVKAG-YGKVVEI- 295
ISSPF Y R HPV R+ H G+D + S + +A DG V +G YG +V I
Sbjct: 334 ISSPFGY-RTHPVTGQRKLHAGIDIRRGNRSNVPVVAAYDGTVVQSTYSSGGYGNMVIIA 392
Query: 296 ---HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYK-----N 347
+ ++ +YAH+ + G V KGQ IG +G+TGLSTGPHLHF V++ +
Sbjct: 393 HSYNGRQVTTLYAHLET--RSVSAGQRVSKGQTIGIMGNTGLSTGPHLHFEVHEGSYRGS 450
Query: 348 SRPINPLGYI 357
S +NP+ YI
Sbjct: 451 SSAVNPMNYI 460
>ref|NP_440561.1| (NC_000911) lysostaphin [Synechocystis sp. PCC 6803]
pir||S75327 lysostaphin - Synechocystis sp. (strain PCC 6803)
dbj|BAA17241.1| (D90904) lysostaphin [Synechocystis sp. PCC 6803]
Length = 411
Score = 73.6 bits (179), Expect = 4e-12
Identities = 55/136 (40%), Positives = 75/136 (54%), Gaps = 9/136 (6%)
Query: 211 FSHSNGHYYDSKAQEVAGFLLETPVKYTR-ISSPFSYGRFHPVLKVRRPHYGVDYAAKHG 269
+S + G Y ++ Q G L PV I+S F + R HP+ R H G D A G
Sbjct: 238 YSRATG-LYSTQGQPNQGTDLMFPVAGVNPITSAFGW-RIHPISGQGRMHNGTDIGAPMG 295
Query: 270 SLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLV-YAHMS-AFANGLKKGSFVKKGQII 326
+ + +A DG V GYG +V + HL+ + YAH+S AF ++ G V +G++I
Sbjct: 296 TPVLAAYDGIVAAAQWSGGYGLMVTLRHLDGTQESRYAHLSEAF---VESGQQVTQGEVI 352
Query: 327 GRVGSTGLSTGPHLHF 342
GRVGSTG STGPHLHF
Sbjct: 353 GRVGSTGFSTGPHLHF 368
>ref|NP_520956.1| (NC_003295) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
emb|CAD16542.1| (AL646072) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
Length = 321
Score = 73.2 bits (178), Expect = 5e-12
Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 248 RFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAH 306
R P R H GVD+ G+ I +A+ G V YG +++I H N L+ YAH
Sbjct: 181 RIDPFTGRRTQHDGVDFVGPVGTPIVAAAGGVVVASEYHHEYGNMIDIDHGNGLKTRYAH 240
Query: 307 MSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTA 360
S +K G VK GQ I +G TG +TGPHLHF V+ N P NP+ ++ A
Sbjct: 241 ASKVF--VKVGDIVKAGQRIALIGRTGRATGPHLHFEVHVNDVPQNPVAFLENA 292
>ref|NP_489297.1| (NC_003272) probable peptidase [Nostoc sp. PCC 7120]
dbj|BAB76956.1| (AP003599) ORF_ID:alr5257~probable peptidase [Nostoc sp. PCC 7120]
Length = 401
Score = 71.6 bits (174), Expect = 2e-11
Identities = 43/106 (40%), Positives = 62/106 (57%), Gaps = 4/106 (3%)
Query: 240 ISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLN 298
I+S F + R HP+ +R H G D A G+ + +A+ G+V GYG V + H +
Sbjct: 263 ITSMFGW-RIHPITGNQRFHAGTDLGAPTGTPVLAAARGQVATSDWLGGYGLTVILNHGS 321
Query: 299 ELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGV 344
+ +Y H+S ++ G +V+ G +IGRVGSTG STGPHLHF V
Sbjct: 322 AQQTLYGHLSELL--VQPGQWVEPGTVIGRVGSTGNSTGPHLHFEV 365
>dbj|BAA02464.1| (D13173) ORF1 [Synechococcus elongatus]
Length = 284
Score = 71.6 bits (174), Expect = 2e-11
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 8/124 (6%)
Query: 240 ISSPFSYGRFHP-VLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG----YGKVVE 294
I++P+ R++ V H G+DYA GS + +A GRV +G ++ +G V
Sbjct: 158 ITTPYGVRRYYNGVFAKDYFHRGLDYAGPKGSAVVAAQRGRVALVGRESQGFLIHGNTVG 217
Query: 295 I-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINP 353
I H + +Y H+ +++G V+ G++IG VG+TG +TGPHLH+G+Y N ++P
Sbjct: 218 IDHGQGVLTIYLHLDQIR--VQEGQMVEAGEVIGTVGNTGAATGPHLHWGLYVNGECVDP 275
Query: 354 LGYI 357
++
Sbjct: 276 RSWL 279
>ref|NP_046584.1| (NC_001884) putative transglycosylase [Bacteriophage SPBc2]
ref|NP_390018.1| (NC_000964) yomI [Bacillus subtilis]
pir||T12796 probable transglycosylase - Bacillus subtilis phage SPBc2
emb|CAB14053.1| (Z99115) yomI [Bacillus subtilis]
gb|AAC13005.1| (AF020713) putative transglycosylase [Bacteriophage SPBc2]
Length = 2285
Score = 71.2 bits (173), Expect = 2e-11
Identities = 48/121 (39%), Positives = 66/121 (53%), Gaps = 5/121 (4%)
Query: 239 RISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLN 298
R+SS YG+ L+ PH G D+AAK G+ I S G+V G G V I +
Sbjct: 1563 RVSS--KYGQQESGLR-SSPHKGTDFAAKAGTAIKSLQSGKVQIAGYSKTAGNWVVIKQD 1619
Query: 299 ELRLV-YAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+ + Y HM + +K G VK GQ IG+VGSTG STG HLH + +N + I+P Y+
Sbjct: 1620 DGTVAKYMHMLNTPS-VKAGQSVKAGQTIGKVGSTGNSTGNHLHLQIEQNGKTIDPEKYM 1678
Query: 358 R 358
+
Sbjct: 1679 Q 1679
>emb|CAC33652.1| (AJ293330) hypothetical protein [Rickettsia montanensis]
Length = 284
Score = 70.5 bits (171), Expect = 3e-11
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 20/176 (11%)
Query: 199 AMVSSRSNQYYLFSHSNGHYYDSKAQE-------------VAGFLLETPVKYTRISSPFS 245
A+V+ +++Y S Y+ K ++ L P +I+S +
Sbjct: 106 AVVTKLNSKYQFLSKPEASYFAKKQTHRNNISELTKLDKIISTIPLMMPEYEPKITSHYG 165
Query: 246 YGRFHPVLKVRRP---HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELR 301
R P K R+ H G+D AK + I++A+ G V YG VEI H +
Sbjct: 166 I-RTSPYKKKRKKKCFHSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGRKFV 224
Query: 302 LVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
YAH+ + +K+G+ +K+GQ IG GSTG +TG HLHF + +++ INP +I
Sbjct: 225 TKYAHLKEMS--VKEGNKIKRGQFIGIQGSTGNATGEHLHFEILLDNKTINPFDFI 278
>ref|NP_219143.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||F71289 conserved hypothetical protein TP0706 - syphilis spirochete
gb|AAC65674.1| (AE001244) conserved hypothetical protein [Treponema pallidum]
Length = 308
Score = 69.3 bits (168), Expect = 8e-11
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVV 293
P+ R++S F R P H G+D AA G+L+++ + G+V + YGK V
Sbjct: 183 PLASGRLTSGFG-ARKSPFTGRLSYHPGIDLAAPMGALVYACASGQVATIAYNRLYGKYV 241
Query: 294 EI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPIN 352
+ H + +Y H+SA +++ V G +IG VGSTG STGPHLHF V + P N
Sbjct: 242 ILQHTDGRHSLYGHLSAVRVRVQQKLSV--GAVIGNVGSTGASTGPHLHFEVREAGVPQN 299
Query: 353 P 353
P
Sbjct: 300 P 300
>ref|NP_233425.1| (NC_002506) tagE protein [Vibrio cholerae]
pir||H82384 tagE protein VCA1043 [imported] - Vibrio cholerae (group O1 strain
N16961)
gb|AAF96937.1| (AE004430) tagE protein [Vibrio cholerae]
Length = 314
Score = 68.9 bits (167), Expect = 1e-10
Identities = 48/158 (30%), Positives = 81/158 (50%), Gaps = 17/158 (10%)
Query: 233 TPVKYTRISSPFSYG-RFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGK 291
+PV R SS YG R HPV + H G D+A G+ I++ +DG V + +
Sbjct: 143 SPVLGARTSS--GYGKRIHPVTGQLKIHRGQDFAVNIGTPIYATADGVVEVTRISKTGSR 200
Query: 292 VVEIHLNELRLVYAHMSAFAN----GLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKN 347
V+ L + Y S++++ +K G FVKKG ++ G++GLS+GPHLH+ +
Sbjct: 201 VI---LFACYMAYGFSSSYSHLHKFVVKNGDFVKKGDLLAYSGNSGLSSGPHLHYEIRFI 257
Query: 348 SRPINPLGYI-------RTAKSKLHGKQREVFLEKAQR 378
RP++P ++ T +K+ G + E + A++
Sbjct: 258 GRPLDPRPFVDWEINNFETIFTKVRGIRWEYLVNNAEQ 295
>emb|CAC33717.1| (AJ293329) hypothetical protein [Rickettsia rickettsii]
Length = 284
Score = 68.9 bits (167), Expect = 1e-10
Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
H G+D AK + I++A+ G V YG VEI H ++ YAH+ + +K+G
Sbjct: 181 HSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGHKFVTKYAHLKEMS--VKEG 238
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+ +K+GQ IG GSTG +TG HLHF + +++ INP +I
Sbjct: 239 NKIKRGQFIGIQGSTGNATGEHLHFEILLDNKAINPFDFI 278
>ref|NP_360730.1| (NC_003103) putative periplasmic protein [Rickettsia conorii]
gb|AAL03631.1| (AE008660) putative periplasmic protein [Rickettsia conorii]
Length = 284
Score = 68.9 bits (167), Expect = 1e-10
Identities = 69/258 (26%), Positives = 113/258 (43%), Gaps = 31/258 (12%)
Query: 128 RKEKTLLLSLQTSPYQDIIKATNDPLLAN-QLMNAYKKSVPFKRL------VKNDKIAIV 180
+ T LL+ +S + K ++ L+ L N K + K L K +KI +
Sbjct: 24 KSSDTTLLATTSSQLKQKYKISHADLVVQYDLTNKNSKCIYAKNLGLIINNPKQNKIFLH 83
Query: 181 YTRDYRVGQAFGQPTIKMA----MVSSRSNQYYLFSHSNGHYYDSKAQE----------- 225
+ + + IK+A +V+ ++Y S Y+ K
Sbjct: 84 KLHNKNLAEFNKAAEIKIANIKAVVTKLHSKYKFLSKPEASYFAKKQTHRNNISELTKLD 143
Query: 226 --VAGFLLETPVKYTRISSPFSYGRFHPVLKVRRP---HYGVDYAAKHGSLIHSASDGRV 280
++ L P +I+S + R P K R+ H G+D AK + I++A+ G V
Sbjct: 144 KIISTIPLMMPEYEPKITSHYGT-RTSPHKKKRKKKCFHSGIDLQAKKAAPIYAAASGIV 202
Query: 281 GFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPH 339
YG VEI H + YAH+ + +K+G+ +K+GQ IG GSTG +TG H
Sbjct: 203 IKAARAPDYGNFVEIKHGRKFVTKYAHLKEMS--VKEGNKIKRGQFIGIQGSTGNATGEH 260
Query: 340 LHFGVYKNSRPINPLGYI 357
LHF + +++ INP +I
Sbjct: 261 LHFEILLDNKAINPFDFI 278
>gb|AAD11751.1| (AF067954) unknown [Salmonella typhimurium]
Length = 191
Score = 68.9 bits (167), Expect = 1e-10
Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 231 LETPVKYT-RISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGY 289
L+ P+ T R+SSPF+ R +PV PH G+DY+ + I S DG++ +
Sbjct: 40 LDYPLSATARLSSPFNPARLNPVSGKVSPHNGIDYSMPMNTKIVSVIDGKITRAEYNSTM 99
Query: 290 GKVVEIHLNE-LRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNS 348
G VE+ ++ Y H++ + KG+ V +G I G++G S+GPHLH+ + N+
Sbjct: 100 GYFVEVTGKAGVKTRYLHLNKIL--VTKGARVTRGGAIALSGNSGRSSGPHLHYELVINN 157
Query: 349 RPINPLGY 356
P+N L +
Sbjct: 158 NPVNSLAF 165
>ref|NP_242466.1| (NC_002570) BH1600~unknown conserved protein in others [Bacillus
halodurans]
dbj|BAB05319.1| (AP001512) BH1600~unknown conserved protein in others [Bacillus
halodurans]
Length = 303
Score = 68.6 bits (166), Expect = 1e-10
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
H+G+D AA G+ + S +DG V YG V+ + H + L VYAH++ +++G
Sbjct: 58 HHGIDIAAPVGTPVISIADGMVRKSYYSDSYGHVIFVEHDHGLETVYAHLNE--RFVEEG 115
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKN 347
VK+G+ IG VG+TG S+GPHLHF V+K+
Sbjct: 116 DTVKEGEQIGTVGNTGRSSGPHLHFEVHKD 145
>ref|NP_486402.1| (NC_003272) lipoprotein [Nostoc sp. PCC 7120]
dbj|BAB74061.1| (AP003589) lipoprotein [Nostoc sp. PCC 7120]
Length = 77
Score = 68.2 bits (165), Expect = 2e-10
Identities = 36/77 (46%), Positives = 46/77 (58%), Gaps = 3/77 (3%)
Query: 282 FMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHL 340
F G GYG+ V I H + +Y H S + +G V++GQ I VGSTGLSTGPHL
Sbjct: 3 FAGWYGGYGRTVIINHGGGITTLYGHASELY--VSEGQTVQRGQAIASVGSTGLSTGPHL 60
Query: 341 HFGVYKNSRPINPLGYI 357
HF V +N P+NP Y+
Sbjct: 61 HFEVRRNGTPVNPADYL 77
>ref|NP_485902.1| (NC_003272) similar to peptidase [Nostoc sp. PCC 7120]
dbj|BAB73561.1| (AP003587) ORF_ID:all1862~similar to peptidase [Nostoc sp. PCC
7120]
Length = 333
Score = 67.8 bits (164), Expect = 2e-10
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKA-GYGKVVEI-HLNELRLVYAHMSAFANGLKK 316
H G+D AA G+ I +A+ G+V +G G G +EI H N VY H + K
Sbjct: 78 HEGIDIAAPSGTPIFAAATGKVVKVGWDEWGLGNAIEIKHPNGSVTVYGHNRRLL--VSK 135
Query: 317 GSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSR-PINPL 354
G VK+GQII +GSTG ST PHLHF Y N + +NP+
Sbjct: 136 GQQVKQGQIIAEMGSTGNSTAPHLHFEYYPNGKVAVNPM 174
>ref|NP_252476.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||C83173 conserved hypothetical protein PA3787 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07174.1|AE004797_9 (AE004797) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 282
Score = 67.8 bits (164), Expect = 2e-10
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 227 AGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVK 286
+ +L+ PV +SSPF RF + R PH G+D+A G+ I + + G+V +G
Sbjct: 150 SNLMLDKPVDGP-LSSPFGLRRFFNG-EERNPHSGLDFAVPAGTPIKAPAAGKVILIGDY 207
Query: 287 AGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVY 345
GK V + H ++ H+S +K G V +G ++G+VG+TG +TGPH+H+ V
Sbjct: 208 FFNGKTVFVDHGQGFISMFCHLSKI--DVKLGQQVPRGGVLGKVGATGRATGPHMHWNVS 265
Query: 346 KNSRPINPLGYI 357
N ++P +I
Sbjct: 266 LNDARVDPAIFI 277
>ref|NP_218489.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||C71372 conserved hypothetical protein TP0049 - syphilis spirochete
gb|AAC65045.1| (AE001190) conserved hypothetical protein [Treponema pallidum]
Length = 342
Score = 67.8 bits (164), Expect = 2e-10
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 240 ISSPFSYGRFHPVLKVRRPHYGVDYAA-KHGSLIHSASDGRVGFMGVKAGYGKVVEI-HL 297
IS F R HP H G+D + + G I + +DG V + +G+G V I H
Sbjct: 218 ISMAFGKNR-HPFTGQWYVHKGIDLSTHRSGDPIVATADGHVVTVEYDSGWGNYVIIKHK 276
Query: 298 NELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+ YAHM ++ + +G +++GQIIG +G+TG++TGPHLH+ ++ S ++P Y+
Sbjct: 277 HGFYTRYAHMQSYT--VTRGQHIRQGQIIGYIGATGVATGPHLHYEIHIGSDVVDPGKYL 334
>ref|NP_487393.1| (NC_003272) putative peptidase [Nostoc sp. PCC 7120]
dbj|BAB75052.1| (AP003592) ORF_ID:alr3353~putative peptidase [Nostoc sp. PCC 7120]
Length = 760
Score = 67.8 bits (164), Expect = 2e-10
Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 257 RPHYGVDYAAKHGSLIHSASDGRVGFMGV-KAGYGKVVEIHLNELRLV-YAHMSAFANGL 314
R H G+D AA G+ + +A+DG V G + GYG +V+I + L YAH S +
Sbjct: 651 RMHRGIDIAAPVGTPVFAAADGVVEKSGWNRGGYGNLVDIRHPDGSLTRYAHNSRLL--V 708
Query: 315 KKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSR-PINPLGYIRTAKS 362
+ G V++GQ I +GSTG STGPH HF ++K + INP+ + S
Sbjct: 709 QAGQQVRQGQQIAAMGSTGFSTGPHTHFEIHKTGKGAINPIAMLPATTS 757
>ref|NP_294572.1| (NC_001263) lipoprotein, putative [Deinococcus radiodurans]
pir||F75467 probable lipoprotein - Deinococcus radiodurans (strain R1)
gb|AAF10427.1|AE001939_4 (AE001939) lipoprotein, putative [Deinococcus radiodurans]
Length = 375
Score = 67.4 bits (163), Expect = 3e-10
Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
HYG DY A+ G+ + + +DG V G G +V I H + +Y H S K G
Sbjct: 273 HYGTDYPARSGTAVLAINDGTVVIAGRYPVRGGLVVIDHGAGVVSLYFHQSKVT--AKVG 330
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+K+GQ +G VGSTGLS GPHLH V NP G++
Sbjct: 331 QQIKRGQKVGEVGSTGLSAGPHLHLEVRVRGEGTNPAGWM 370
>gb|AAL82371.1| (AF424783) tail length tape measure protein [Staphylococcus aureus
phage phi 13]
Length = 1550
Score = 67.0 bits (162), Expect = 4e-10
Identities = 40/101 (39%), Positives = 59/101 (57%), Gaps = 4/101 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGV-KAGYGKVVEIHLNELRLVYAHMSAFANGLKKG 317
H G+D+ + + S +GR M V GYGK V+I L ++YAH+S + +K G
Sbjct: 1189 HEGLDFDYIYEP-VPSTINGRAQVMPVHNGGYGKWVKIVKGALEVIYAHLSKYK--VKTG 1245
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR 358
V+ GQ +G G+TG STGPHLH+ + N R +PL ++R
Sbjct: 1246 QQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPLPWLR 1286
>sp|O05156|ALE1_STACP GLYCYL-GLYCINE ENDOPEPTIDASE ALE-1 PRECURSOR
dbj|BAA13069.1| (D86328) ALE-1 [Staphylococcus capitis]
Length = 362
Score = 65.9 bits (159), Expect = 8e-10
Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 17/113 (15%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAG---YGKVVEIHLNEL----RLVYAHMSAFA 311
HYGVD+ G+ + + SDG++ V+AG YG EI L E R Y H+S F
Sbjct: 150 HYGVDFFMNVGTPVRAISDGKI----VEAGWTNYGGGNEIGLVENDGVHRQWYMHLSKF- 204
Query: 312 NGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF----GVYKNSRPINPLGYIRTA 360
+K G VK GQIIG GSTG ST PHLHF + N+ +P+ ++++A
Sbjct: 205 -NVKVGDRVKAGQIIGWSGSTGYSTAPHLHFQRMTNSFSNNTAQDPMPFLKSA 256
>ref|NP_441943.1| (NC_000911) lipoprotein; NlpD [Synechocystis sp. PCC 6803]
pir||S76492 lipoprotein nlpD - Synechocystis sp. (strain PCC 6803)
dbj|BAA18621.1| (D90915) lipoprotein; NlpD [Synechocystis sp. PCC 6803]
Length = 715
Score = 65.9 bits (159), Expect = 8e-10
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 257 RPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG-YGKVVEI-HLNELRLVYAHMSAFANGL 314
R H G+D AA G+ I +A+ G V F G +G +G +V+I H + YAH + +
Sbjct: 610 RMHRGIDIAAPIGTPIMAAASGEVVFSGWNSGGFGNLVKIRHGDGSVTYYAHNNRLL--V 667
Query: 315 KKGSFVKKGQIIGRVGSTGLSTGPHLHFGV-YKNSRPINPLGYI 357
++G +V++GQ I +GSTG STGPHLHF + + +NP+ +
Sbjct: 668 RRGEYVEQGQQIAEMGSTGRSTGPHLHFEIRVGGTNAVNPVALL 711
>ref|NP_058454.1| (NC_002321) orf 16 [Staphylococcus aureus bacteriophage PVL]
pir||T00149 hypothetical protein 16 - Staphylococcus aureus phage phi PVL
dbj|BAA31889.1| (AB009866) orf 16 [Staphylococcus aureus bacteriophage PVL]
Length = 539
Score = 65.5 bits (158), Expect = 1e-09
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGV-KAGYGKVVEIHLNELRLVYAHMSAFANGLKKG 317
H G+D+ + + S +GR M GYGK V+I L ++YAH+S + +K G
Sbjct: 414 HEGLDFDYIYEP-VPSTINGRAQVMPFHNGGYGKWVKIVKGALEVIYAHLSKYK--VKTG 470
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR--TAKSKLH 365
V+ GQ +G G+TG STGPHLH+ + N R +PL ++R +K+H
Sbjct: 471 QQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPLPWLRKNNGAAKVH 520
>ref|NP_061640.1| (NC_002486) phi PVL ORF 15 and 16 homologue [Staphylococcus aureus
prophage phiPV83]
dbj|BAA97857.1| (AB044554) phi PVL ORF 15 and 16 homologue [Staphylococcus aureus
prophage phiPV83]
Length = 1313
Score = 65.1 bits (157), Expect = 1e-09
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGV-KAGYGKVVEIHLNELRLVYAHMSAFANGLKKG 317
H G+D+ + + S +GR M GYGK V+I L ++YAH+S + +K G
Sbjct: 1188 HEGLDFDYIYEP-VPSTINGRAQVMPFHNGGYGKWVKIVKGALEVIYAHLSKYK--VKTG 1244
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR--TAKSKLH 365
V+ GQ +G G+TG STGPHLH+ + N R +PL ++R +K+H
Sbjct: 1245 HQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPLPWLRKNNGAAKVH 1294
>ref|NP_646712.1| (NC_003923) hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
dbj|BAB95760.1| (AP004828) hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
Length = 1549
Score = 65.1 bits (157), Expect = 1e-09
Identities = 39/101 (38%), Positives = 58/101 (56%), Gaps = 4/101 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGV-KAGYGKVVEIHLNELRLVYAHMSAFANGLKKG 317
H G+D+ + + S +GR M GYGK V+I L ++YAH+S + +K G
Sbjct: 1188 HEGLDFDYIYEP-VPSTINGRAQVMPFHNGGYGKWVKIVKGALEVIYAHLSKYK--VKTG 1244
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR 358
V+ GQ +G G+TG STGPHLH+ + N R +PL ++R
Sbjct: 1245 QQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPLPWLR 1285
>gb|AAC46072.1| (U50357) zoocin A endopeptidase [Streptococcus equi subsp.
zooepidemicus]
Length = 285
Score = 64.7 bits (156), Expect = 2e-09
Identities = 46/118 (38%), Positives = 63/118 (52%), Gaps = 18/118 (15%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGY-------GKVVEI-HLNELRLVYAHMSAF 310
H GVDYA G+ + + ++G V F G A + G V I H + + YAH+S
Sbjct: 45 HVGVDYAVPVGTPVRAVANGTVKFAGNGANHPWMLWMAGNCVLIQHADGMHTGYAHLSKI 104
Query: 311 ANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGV------YKN--SRPINPLGYIRTA 360
+ + S VK+GQIIG G+TG TGPHLHF + ++N S I+P GYI A
Sbjct: 105 S--VSTDSTVKQGQIIGYTGATGQVTGPHLHFEMLPANPNWQNGFSGRIDPTGYIANA 160
>sp|P10547|LSTP_STASI LYSOSTAPHIN PRECURSOR (GLYCYL-GLYCINE ENDOPEPTIDASE)
gb|AAB53783.1| (U66883) lysostaphin [Staphylococcus simulans]
Length = 493
Score = 64.3 bits (155), Expect = 2e-09
Identities = 44/113 (38%), Positives = 63/113 (54%), Gaps = 17/113 (15%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAG---YGKVVEIHLNEL----RLVYAHMSAFA 311
HYGVD+ G+ + + S G++ V+AG YG +I L E R Y H+S +
Sbjct: 279 HYGVDFFMNIGTPVKAISSGKI----VEAGWSNYGGGNQIGLIENDGVHRQWYMHLSKY- 333
Query: 312 NGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF----GVYKNSRPINPLGYIRTA 360
+K G +VK GQIIG GSTG ST PHLHF + NS +P+ ++++A
Sbjct: 334 -NVKVGDYVKAGQIIGWSGSTGYSTAPHLHFQRMVNSFSNSTAQDPMPFLKSA 385
>ref|NP_219139.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||B71289 conserved hypothetical protein TP0702 - syphilis spirochete
gb|AAC65671.1| (AE001244) conserved hypothetical protein [Treponema pallidum]
Length = 178
Score = 64.3 bits (155), Expect = 2e-09
Identities = 42/124 (33%), Positives = 61/124 (48%), Gaps = 6/124 (4%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVRRP---HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYG 290
PV+ R +S F R R H+G D+ G+ +++A GRV + G
Sbjct: 16 PVESRRCTSVFGQARVFVYTDGTRSAQYHWGKDFGVPVGTAVYAAGTGRVVLAEQRTTTG 75
Query: 291 -KVVEIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSR 349
VV H L Y H++ +KK ++V G +I R G+TG STGPH+H+ NS
Sbjct: 76 WSVVLEHAPGLYTAYYHLNELL--VKKDTYVSTGTLIARSGTTGFSTGPHVHWEARINST 133
Query: 350 PINP 353
PI+P
Sbjct: 134 PIDP 137
>pir||A25881 lysostaphin precursor - Staphylococcus simulans
gb|AAA26655.1| (M15686) lysostaphin (ttg start codon) [Staphylococcus simulans]
Length = 389
Score = 64.3 bits (155), Expect = 2e-09
Identities = 44/113 (38%), Positives = 63/113 (54%), Gaps = 17/113 (15%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAG---YGKVVEIHLNEL----RLVYAHMSAFA 311
HYGVD+ G+ + + S G++ V+AG YG +I L E R Y H+S +
Sbjct: 175 HYGVDFFMNIGTPVKAISSGKI----VEAGWSNYGGGNQIGLIENDGVHRQWYMHLSKY- 229
Query: 312 NGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF----GVYKNSRPINPLGYIRTA 360
+K G +VK GQIIG GSTG ST PHLHF + NS +P+ ++++A
Sbjct: 230 -NVKVGDYVKAGQIIGWSGSTGYSTAPHLHFQRMVNSFSNSTAQDPMPFLKSA 281
>sp|P10548|LSTP_STAST LYSOSTAPHIN PRECURSOR (GLYCYL-GLYCINE ENDOPEPTIDASE)
pir||S01079 lysostaphin precursor - Staphylococcus simulans bv. staphylolyticus
emb|CAA29494.1| (X06121) lysostaphin (AA 1-480) [Staphylococcus simulans bv.
staphylolyticus]
Length = 480
Score = 64.3 bits (155), Expect = 2e-09
Identities = 44/113 (38%), Positives = 63/113 (54%), Gaps = 17/113 (15%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAG---YGKVVEIHLNEL----RLVYAHMSAFA 311
HYGVD+ G+ + + S G++ V+AG YG +I L E R Y H+S +
Sbjct: 266 HYGVDFFMNIGTPVKAISSGKI----VEAGWSNYGGGNQIGLIENDGVHRQWYMHLSKY- 320
Query: 312 NGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF----GVYKNSRPINPLGYIRTA 360
+K G +VK GQIIG GSTG ST PHLHF + NS +P+ ++++A
Sbjct: 321 -NVKVGDYVKAGQIIGWSGSTGYSTAPHLHFQRMVNSFSNSTAQDPMPFLKSA 372
>ref|NP_212389.1| (NC_001318) B. burgdorferi predicted coding region BB0255 [Borrelia
burgdorferi]
pir||G70131 hypothetical protein BB0255 - Lyme disease spirochete
gb|AAC66642.1| (AE001136) B. burgdorferi predicted coding region BB0255 [Borrelia
burgdorferi]
Length = 318
Score = 63.9 bits (154), Expect = 3e-09
Identities = 39/98 (39%), Positives = 53/98 (53%), Gaps = 5/98 (5%)
Query: 259 HYGVDYAA--KHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLK 315
H G+DYA + + I +A G+V F + G + I HL + +Y H+S G+
Sbjct: 201 HNGIDYAPFKRENTPIFAAGKGKVVFAQNRELTGNTLIIQHLPGVFTIYLHLSKL--GIS 258
Query: 316 KGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINP 353
+ V G+ IG G+TGLSTGPHLHF V N INP
Sbjct: 259 ENKIVSAGEYIGHTGNTGLSTGPHLHFEVRINGIAINP 296
>ref|NP_102746.1| (NC_002678) lipoprotein [Mesorhizobium loti]
dbj|BAB48532.1| (AP002996) lipoprotein [Mesorhizobium loti]
Length = 515
Score = 62.4 bits (150), Expect = 9e-09
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG--VKAGYGKVVEIHLNELRLVYAHMSAFANGLKKGS 318
GVD A G+ I +A +G V + G +K V+ H N L VY H S+ +++G
Sbjct: 418 GVDIAVPSGTPIKAAENGVVIYAGDGLKEFGNTVLVRHENGLVTVYGHASSIE--VQRGQ 475
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK+GQ I G +G + P LHF V KNS P++P GY+
Sbjct: 476 KVKRGQEIALSGMSGTTDSPKLHFEVRKNSAPVDPSGYL 514
>ref|NP_282382.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||E81330 probable periplasmic protein Cj1235 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73489.1| (AL139077) putative periplasmic protein [Campylobacter jejuni]
Length = 273
Score = 62.0 bits (149), Expect = 1e-08
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 254 KVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFAN 312
KV H G D+ A G+ I++A+ G V + G V I H + Y H+S
Sbjct: 163 KVASYHSGTDFRATTGTPIYAANSGVVKIAKDRYFAGNSVVIDHGFGIYSQYYHLSKI-- 220
Query: 313 GLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+K G +KKG++IG G+TG +GPHLHFG+ + ++PL ++
Sbjct: 221 DVKIGQKIKKGELIGLSGATGRVSGPHLHFGILAGGKQVDPLDFV 265
>ref|NP_643237.1| (NC_003919) peptidase [Xanthomonas axonopodis pv. citri str. 306]
gb|AAM37773.1| (AE011935) peptidase [Xanthomonas axonopodis pv. citri str. 306]
Length = 205
Score = 61.6 bits (148), Expect = 2e-08
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 257 RPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNEL-RLVYAHMSAFANGLK 315
R H GVD A G+ + +A+ G V + + GK V + + R YAH+ +A GL
Sbjct: 93 RTHAGVDIFAPRGTSVVAATRGVVSAIRDQGLGGKQVWLLGPAMERHYYAHLDDWAAGLA 152
Query: 316 KGSFVKKGQIIGRVGSTGLSTG--PHLHFGVYKNSRPINPLGYIR 358
G V+ G ++G+VG+TG + G PHLH+GVY + +PL +R
Sbjct: 153 VGDVVEPGTLLGKVGTTGNARGTPPHLHYGVYGRNGAYDPLPLLR 197
>ref|NP_391114.1| (NC_000964) alternate gene name: yutA [Bacillus subtilis]
pir||D70015 hypothetical protein yunA - Bacillus subtilis
emb|CAB15224.1| (Z99120) alternate gene name: yutA [Bacillus subtilis]
Length = 349
Score = 61.2 bits (147), Expect = 2e-08
Identities = 37/101 (36%), Positives = 52/101 (50%), Gaps = 8/101 (7%)
Query: 256 RRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIH-LNELRLVYAHMSAFANGL 314
RR H G D A +G + S G V G G + I +N +AH++ FA G+
Sbjct: 224 RRIHEGTDIFAHYGLPVKSTCYGVVEMKGWNRFGGWRIGIRDINNTYHYFAHLNGFAKGI 283
Query: 315 KKGSFVKKGQIIGRVGSTGLST-------GPHLHFGVYKNS 348
K G V+ GQ+IG VGS+G PHLH+G+YK++
Sbjct: 284 KTGQIVEPGQVIGSVGSSGYGPPGTAGKFPPHLHYGMYKDN 324
>ref|NP_629962.1| (NC_003888) putative membrane protein [Streptomyces coelicolor
A3(2)]
pir||T35875 hypothetical protein SC9B10.06 - Streptomyces coelicolor
emb|CAA15796.1| (AL009204) putative membrane protein [Streptomyces coelicolor
A3(2)]
Length = 250
Score = 60.8 bits (146), Expect = 3e-08
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRLV-YAHMSAFANGLKKG 317
H G+D+ A G+ +HS G V G YG V I +++ Y H+S+ G+ G
Sbjct: 143 HTGIDFHASSGTSVHSVGVGTVVEAGWGGAYGNQVVIRMHDGTYTQYGHLSSI--GVSVG 200
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKN---SRPINPLGYIRT 359
V+ GQ IG G+TG TGPHLHF + ++P+ Y+R+
Sbjct: 201 QSVEPGQQIGVSGATGNVTGPHLHFEARTSPEYGSDMDPVAYLRS 245
>ref|NP_298152.1| (NC_002488) hypothetical protein [Xylella fastidiosa 9a5c]
pir||C82752 hypothetical protein XF0862 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF83672.1|AE003926_1 (AE003926) hypothetical protein [Xylella fastidiosa 9a5c]
Length = 275
Score = 60.5 bits (145), Expect = 3e-08
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 20/125 (16%)
Query: 259 HYGVDYAAKHGSLIHSASDGRV-----GFM-----GVKAGYGKVVEI-HLNELRLVYAHM 307
+Y +D+A G+ I +A GR+ GF G G G ++ I H + +YAH+
Sbjct: 151 YYALDFALPKGTPILAARAGRIMEVQTGFQEKATNGHHVGGGNLIRILHEDGSMAIYAHL 210
Query: 308 SAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNS---------RPINPLGYIR 358
SA + +G V GQ +G G+TG ST PHLHF + N R +PLG +R
Sbjct: 211 SADGITVHQGDHVATGQCLGLSGNTGFSTAPHLHFAIQLNRNLHLVSVPFRMASPLGELR 270
Query: 359 TAKSK 363
+ +
Sbjct: 271 LPRKQ 275
>ref|NP_224173.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71806 hypothetical protein jhp1455 - Helicobacter pylori (strain J99)
gb|AAD07033.1| (AE001567) putative [Helicobacter pylori J99]
Length = 308
Score = 60.1 bits (144), Expect = 5e-08
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 248 RFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVK--AGYGKVVEI-HLNELRLVY 304
R HP+ K++ G+D+ A + +++++DG V F+ + AGYG +V I H +Y
Sbjct: 154 RNHPIKKIKGVESGIDFIAPLNTPVYASADGIVDFVKTRSNAGYGNLVRIEHAFGFSSIY 213
Query: 305 AHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGV 344
H+ ++ SF++KGQ+IG G +G S G LH+ V
Sbjct: 214 THLDHV--NVQPKSFIQKGQLIGYSGKSGNSGGEKLHYEV 251
>ref|NP_066789.1| (NC_002576) putative peptidase [Rhodococcus equi]
gb|AAG21739.1| (AF116907) putative peptidase [Rhodococcus equi]
dbj|BAB16645.1| (AP001204) hypothetical protein [Rhodococcus equi]
Length = 546
Score = 59.7 bits (143), Expect = 6e-08
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 6/91 (6%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGK-VVEIHLNELRLV---YAHMSAFANGL 314
H G+D A G+ I++A+DG V G +G+G+ VV H+ + +LV Y H+ ++ +
Sbjct: 85 HKGIDLAGDIGTPIYAAADGTVRNAGEASGFGQWVVLDHVRDGQLVATVYGHIDTYS--V 142
Query: 315 KKGSFVKKGQIIGRVGSTGLSTGPHLHFGVY 345
+ G V+ GQ I +G+ G STGPHLH+ V+
Sbjct: 143 EVGQQVRAGQQIATIGNRGQSTGPHLHWEVW 173
>ref|NP_621866.1| (NC_003869) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
gb|AAM23470.1| (AE012990) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
Length = 270
Score = 59.7 bits (143), Expect = 6e-08
Identities = 38/101 (37%), Positives = 52/101 (50%), Gaps = 4/101 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRLVYAHMSAFANGLKKGS 318
H G+D A K G + +ASDG V + G V I +VYA + +K+G
Sbjct: 168 HKGIDIAGKLGEPVVAASDGIVSKVYKDPKLGNTVVIKNGIWEMVYASLGDNIK-VKEGD 226
Query: 319 FVKKGQIIGRVGSTG---LSTGPHLHFGVYKNSRPINPLGY 356
+ KGQ IG VG T ++ GPHLHF + +N PI+P Y
Sbjct: 227 KITKGQQIGEVGDTAKFEIAEGPHLHFELRENGVPIDPTPY 267
>ref|NP_628133.1| (NC_003888) possible secreted peptidase [Streptomyces coelicolor
A3(2)]
pir||T36055 probable secreted proteinase - Streptomyces coelicolor
emb|CAA22221.1| (AL034355) possible secreted peptidase [Streptomyces coelicolor
A3(2)]
Length = 349
Score = 59.3 bits (142), Expect = 8e-08
Identities = 42/112 (37%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYG-KV 292
PV+ +S+ F G + H G D+A G+ + S GRV + +G +V
Sbjct: 221 PVEAYELSASFGSGGS----RWAHRHTGQDFAVPVGTPVRSVGTGRVLKVSCGGAFGIQV 276
Query: 293 VEIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGV 344
V H YAH++A A + +G V GQ IG+ GSTG STGPHLHF V
Sbjct: 277 VIEHAGGYYTQYAHLAAVA--VDQGDRVDAGQWIGQSGSTGNSTGPHLHFEV 326
>ref|NP_638107.1| (NC_003902) peptidase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gb|AAM42031.1| (AE012389) peptidase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
Length = 196
Score = 58.9 bits (141), Expect = 1e-07
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 257 RPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNEL-RLVYAHMSAFANGLK 315
R H GVD A G+ + +A+ G V + GK V + + R YAH+ +A GL
Sbjct: 84 RSHAGVDIFAPRGTAVVAATRGVVSSIRDTGLGGKQVWVLGPAMERHYYAHLDDWAPGLA 143
Query: 316 KGSFVKKGQIIGRVGSTGLSTG--PHLHFGVYKNSRPINPLGYIR 358
G V+ G +G VG+TG + G PHLH+G+Y + +PL +R
Sbjct: 144 VGDVVEPGTALGMVGTTGNARGTPPHLHYGIYGRNGAYDPLPLLR 188
>ref|NP_628288.1| (NC_003888) probable peptidase [Streptomyces coelicolor A3(2)]
emb|CAB56389.1| (AL118515) probable peptidase [Streptomyces coelicolor A3(2)]
Length = 347
Score = 58.2 bits (139), Expect = 2e-07
Identities = 35/103 (33%), Positives = 55/103 (52%), Gaps = 4/103 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNE-LRLVYAHMSAFANGLKKG 317
H G+D+AA G+L+ + G + G YG + L++ L YAH S+ + G
Sbjct: 242 HTGLDFAAPTGTLLKAVHGGTITSAGWDGSYGYKTVLTLDDGTELWYAHQSSI--NVSVG 299
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVY-KNSRPINPLGYIRT 359
V G +IGRVG+TG TG HLH V+ I+P+ ++++
Sbjct: 300 QKVTTGDVIGRVGATGNVTGAHLHLEVHTAGGTGIDPMAWLQS 342
>ref|NP_208335.1| (NC_000915) toxR-activated gene (tagE) [Helicobacter pylori 26695]
pir||H64712 toxR-activated gene - Helicobacter pylori (strain 26695)
gb|AAD08583.1| (AE000652) toxR-activated gene (tagE) [Helicobacter pylori 26695]
Length = 308
Score = 58.2 bits (139), Expect = 2e-07
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 248 RFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKA--GYGKVVEI-HLNELRLVY 304
R HP+ K++ G+D+ A + +++++DG V F+ + GYG +V I H +Y
Sbjct: 154 RNHPIKKIKGVESGIDFIAPLNTPVYASADGIVDFVKTNSNVGYGNLVRIEHAFGFSSIY 213
Query: 305 AHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGV 344
H+ ++ SF++KGQ+IG G +G S G LH+ V
Sbjct: 214 THLDHV--NVQPKSFIQKGQLIGYSGKSGNSGGEKLHYEV 251
>ref|NP_612844.1| (NC_003524) Gp15 protein [bacteriophage phi3626]
gb|AAL96785.1| (AY082070) Gp15 protein [bacteriophage phi3626]
Length = 983
Score = 58.2 bits (139), Expect = 2e-07
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRV-GFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKK 316
H G+D+ G+ + + DG V + YGK + + H L +YAH S + +
Sbjct: 878 HDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFVDHGGGLITIYAHNSELL--VNE 935
Query: 317 GSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAK 361
G VK+GQII + G+TG STGPHLH+ + N P N +R +
Sbjct: 936 GDRVKRGQIIAKTGNTGNSTGPHLHWELRVNGIPQNVAPSLRVGQ 980
>pir||T13216 minor capsid protein 1608 - Lactobacillus phage phi-gle
emb|CAA66745.1| (X98106) minor capsid protein [Bacteriophage phig1e]
Length = 1608
Score = 57.4 bits (137), Expect = 3e-07
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLN--ELRLVYAHMSAFANGLKK 316
H G+D+AA G+ I + G V G +G+G V I + + +Y HM +K
Sbjct: 1257 HKGIDFAAPLGTPIPAQYGGTVVQAGPASGFGNWVVIKPSGASVDTIYGHMKRMK--VKT 1314
Query: 317 GSFVKKGQIIGRVGSTGLSTGPHLHFGVYK--NSRPINPLGY 356
G VK GQII VGS G S+GPH+H+ + + NP+ Y
Sbjct: 1315 GQHVKAGQIIAWVGSEGQSSGPHVHYELRAGLGGKSYNPMTY 1356
>ref|NP_519327.1| (NC_003295) PROBABLE LIPOPROTEIN NLPD/LPPB HOMOLOG [Ralstonia
solanacearum]
emb|CAD14908.1| (AL646063) PROBABLE LIPOPROTEIN NLPD/LPPB HOMOLOG [Ralstonia
solanacearum]
Length = 268
Score = 56.6 bits (135), Expect = 5e-07
Identities = 35/101 (34%), Positives = 55/101 (53%), Gaps = 10/101 (9%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRLVYAHMSAFANGLK----K 316
G+D K G + +A DG+V +G GYG +V I N+ ++A+ N K +
Sbjct: 171 GIDIGGKRGDAVTAADDGKVIHVGPLRGYGNLVIIKHND-----TFLTAYGNNDKVLVTE 225
Query: 317 GSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
S VKKGQ I +GST + LHF V +N +P++P+ ++
Sbjct: 226 QSTVKKGQKIAEMGSTD-ADRVKLHFEVRRNGKPVDPMRFL 265
>ref|NP_635417.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM39341.1| (AE012095) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 405
Score = 56.6 bits (135), Expect = 5e-07
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 248 RFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAH 306
RF+ L GV A GS + + +DG V F GYG ++ + H N +YAH
Sbjct: 294 RFNATLPDGHTSKGVLIGAPKGSTVTAVADGTVVFSDWMTGYGMILIVDHGNGYMSLYAH 353
Query: 307 MSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR 358
G+ +K+G+ + +VGS+G P L+F + +N +P++P +++
Sbjct: 354 NDTLLRDA--GASIKRGEAVAKVGSSGGQGVPALYFELRRNGQPVDPSSWLQ 403
>ref|NP_638206.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42130.1| (AE012399) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 284
Score = 56.6 bits (135), Expect = 5e-07
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 260 YGVDYAAKHGSLIHSASDGRV----------GFMGVKAGYGKVVEI-HLNELRLVYAHMS 308
Y +D+A + + +A DG V G G AG G +V + H + +YAH++
Sbjct: 160 YAIDFALPANTPVLAARDGVVMEIQQGAEEAGPHGPDAGGGNLVRLLHADGSMAIYAHLA 219
Query: 309 AFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKN 347
+ G V+ G+ +G GSTG ST PHLHF V +N
Sbjct: 220 PAGVLVHPGQRVRSGERLGSAGSTGFSTAPHLHFAVQRN 258
>ref|NP_600087.1| (NC_003450) COG0739:Membrane proteins related to
metalloendopeptidases [Corynebacterium glutamicum]
dbj|BAB98251.1| (AP005276) Membrane proteins related to metalloendopeptidases
[Corynebacterium glutamicum ATCC 13032]
Length = 237
Score = 56.6 bits (135), Expect = 5e-07
Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
H GVD A G+ I +A DG V G +G+G V + H + VY HM + G
Sbjct: 132 HNGVDIANAIGTPILAAMDGTVIDAGPASGFGNWVRLQHEDGTITVYGHMETVE--VTVG 189
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVY 345
VK G+ I +GS G STG HLHF VY
Sbjct: 190 QTVKAGERIAGMGSRGFSTGSHLHFEVY 217
>ref|NP_215465.1| (NC_000962) hypothetical protein Rv0950c [Mycobacterium
tuberculosis H37Rv]
ref|NP_335411.1| (NC_002755) peptidase, M23/M37 family [Mycobacterium tuberculosis
CDC1551]
pir||D70716 hypothetical protein Rv0950c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB02000.1| (Z79700) hypothetical protein Rv0950c [Mycobacterium tuberculosis
H37Rv]
gb|AAK45225.1| (AE006983) peptidase, M23/M37 family [Mycobacterium tuberculosis
CDC1551]
Length = 332
Score = 56.2 bits (134), Expect = 7e-07
Identities = 35/87 (40%), Positives = 47/87 (53%), Gaps = 3/87 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
H G+D A G+ I++ SDG V G AGYG V++ H + +Y H++ + G
Sbjct: 222 HAGIDLANAIGTPIYAVSDGVVIDAGPTAGYGMWVKLLHADGTVTLYGHVNTTL--VSVG 279
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGV 344
V G I +GS G STGPHLHF V
Sbjct: 280 ERVMAGDQIATMGSRGFSTGPHLHFEV 306
>pir||T45433 hypothetical protein MLCB373.02c [imported] - Mycobacterium leprae
emb|CAB36664.1| (AL035500) hypothetical protein MLCB373.02c [Mycobacterium leprae]
Length = 343
Score = 56.2 bits (134), Expect = 7e-07
Identities = 37/101 (36%), Positives = 55/101 (53%), Gaps = 4/101 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
H G+D A G+ I + SDG V +G AGYG V++ H + +Y H++ + G
Sbjct: 233 HAGIDLANAIGTPILAVSDGVVIDVGPTAGYGMWVKLRHADGTVTLYGHVNTTL--VNVG 290
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGV-YKNSRPINPLGYI 357
+V G I +G+ G STGPHLHF V S I+P+ ++
Sbjct: 291 QYVVAGDQIATMGTRGNSTGPHLHFEVLLSGSERIDPVPWL 331
>gb|AAC38576.1| (AF042351) novel lipoprotein NlpD [Ralstonia solanacearum]
Length = 176
Score = 56.2 bits (134), Expect = 7e-07
Identities = 35/101 (34%), Positives = 55/101 (53%), Gaps = 10/101 (9%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRLVYAHMSAFANGLK----K 316
G+D K G + +A DG+V +G GYG +V I N+ ++A+ N K +
Sbjct: 79 GIDIGGKRGDPVSAADDGKVIHVGPLRGYGNLVIIKHND-----TFLTAYGNNDKVLVTE 133
Query: 317 GSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
S VKKGQ I +GST + LHF V +N +P++P+ ++
Sbjct: 134 QSTVKKGQKIAEMGSTD-ADRVKLHFEVRRNGKPVDPMRFL 173
>ref|NP_654672.1| (NC_003995) Peptidase_M37, Peptidase family M23/M37 [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 377
Score = 56.2 bits (134), Expect = 7e-07
Identities = 41/108 (37%), Positives = 56/108 (50%), Gaps = 13/108 (12%)
Query: 239 RISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HL 297
RISS F ++ + HYG+D AA+ I +A+ G+V A YG VV I H
Sbjct: 265 RISSTFD-------MRWEQMHYGIDIAAQGNVSIQAAAAGKVVKSYYSASYGNVVFIAHX 317
Query: 298 NELRL---VYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF 342
+L VYAHM ++ G GQ++G +G+TG S G HLHF
Sbjct: 318 INGKLYTTVYAHMKD--RTVQAGDSSTAGQLVGHMGNTGHSYGAHLHF 363
>ref|NP_301240.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC29662.1| (AL583917) conserved hypothetical protein [Mycobacterium leprae]
Length = 333
Score = 56.2 bits (134), Expect = 7e-07
Identities = 37/101 (36%), Positives = 55/101 (53%), Gaps = 4/101 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
H G+D A G+ I + SDG V +G AGYG V++ H + +Y H++ + G
Sbjct: 223 HAGIDLANAIGTPILAVSDGVVIDVGPTAGYGMWVKLRHADGTVTLYGHVNTTL--VNVG 280
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGV-YKNSRPINPLGYI 357
+V G I +G+ G STGPHLHF V S I+P+ ++
Sbjct: 281 QYVVAGDQIATMGTRGNSTGPHLHFEVLLSGSERIDPVPWL 321
>ref|NP_244303.1| (NC_002570) BH3436~unknown conserved protein in B. subtilis
[Bacillus halodurans]
dbj|BAB07155.1| (AP001518) BH3436~unknown conserved protein in B. subtilis
[Bacillus halodurans]
Length = 337
Score = 55.8 bits (133), Expect = 9e-07
Identities = 34/101 (33%), Positives = 53/101 (51%), Gaps = 8/101 (7%)
Query: 256 RRPHYGVDYAAKHGSLIHSASDGRVGFMGV-KAGYGKVVEIHLNELRLVYAHMSAFANGL 314
RR H G D A + + + + G V G K G ++ L+ + YAH+S F G+
Sbjct: 209 RRIHEGTDIFANYNVPVMATAYGIVEIKGWNKYGGWRIGVRDLDNVYHYYAHLSGFEKGV 268
Query: 315 KKGSFVKKGQIIGRVGSTGLST-------GPHLHFGVYKNS 348
+KG+ V G +IG VGS+G PHLH+G+Y+++
Sbjct: 269 EKGTVVAPGDVIGYVGSSGYGKPGTQGKFPPHLHYGMYRDN 309
>ref|NP_539996.1| (NC_003317) LIPOPROTEIN NLPD [Brucella melitensis]
gb|AAL52260.1| (AE009547) LIPOPROTEIN NLPD [Brucella melitensis]
Length = 427
Score = 55.8 bits (133), Expect = 9e-07
Identities = 35/101 (34%), Positives = 55/101 (53%), Gaps = 4/101 (3%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKAG-YGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D G+ + +A +G V + G +G+ V I H N L VY H S +++G
Sbjct: 329 GIDIMVPEGTPVKAAENGVVIYAGDGLKEFGQTVLIRHDNGLVTVYGHNSQIM--VQRGQ 386
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRT 359
V++G+ I + G +G + P LHF V KNS P+NP Y+ +
Sbjct: 387 KVRRGEEIAKSGMSGNAKSPKLHFEVRKNSAPVNPTKYLES 427
>ref|NP_488047.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB75706.1| (AP003595) ORF_ID:alr4007~hypothetical protein [Nostoc sp. PCC
7120]
Length = 198
Score = 55.8 bits (133), Expect = 9e-07
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRLVYAHMSAF---ANGLK 315
H G+D AA GS I + G V +G + G + I + Y HM + ANG +
Sbjct: 49 HSGLDIAAPQGSYIRNWWAGTVIKVGDRTACGTHIVIKSGQWEHTYCHMEGYVDTANGRR 108
Query: 316 ------------KGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR 358
+G + G IGRVG TG +TGPHLH+G+ + ++P +R
Sbjct: 109 FLIDRPGGIQIWEGQTIPTGARIGRVGMTGRTTGPHLHWGLKYANNYVDPAMVLR 163
>ref|NP_438915.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44864|YIBP_HAEIN Hypothetical protein HI0756
pir||D64158 hypothetical protein HI0756 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22415.1| (U32760) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 410
Score = 55.5 bits (132), Expect = 1e-06
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRL-VYAHMSAFANGLKKGSF 319
G+ A G+ + + + GRV G GYG +V + E L +Y A + +K G
Sbjct: 314 GMVIGASAGTPVKAIAAGRVILAGYLNGYGYMVIVKHGETDLSLYGFNQAVS--VKVGQL 371
Query: 320 VKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR 358
V GQ+I +VG+TG + L+FG+ + P+NP G++R
Sbjct: 372 VSAGQVIAQVGNTGEISRSALYFGISRKGTPVNPAGWVR 410
>ref|NP_274491.1| (NC_003112) lipoprotein NlpD, putative [Neisseria meningitidis
MC58]
pir||H81079 lipoprotein NlpD, probable NMB1483 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41839.1| (AE002497) lipoprotein NlpD, putative [Neisseria meningitidis MC58]
Length = 415
Score = 55.5 bits (132), Expect = 1e-06
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKA-GYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
GVD A G + +A+DG+V + G GYG +V I H + Y H G +G
Sbjct: 318 GVDIAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHNSSFLTAYGHNQKLLVG--EGQ 375
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK+GQ + +G+T S LHF V +N +P+NP YI
Sbjct: 376 QVKRGQQVALMGNTDASR-TQLHFEVRQNGKPVNPNSYI 413
>ref|NP_489203.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB76862.1| (AP003598) ORF_ID:all5163~hypothetical protein [Nostoc sp. PCC
7120]
Length = 295
Score = 55.5 bits (132), Expect = 1e-06
Identities = 39/107 (36%), Positives = 56/107 (51%), Gaps = 9/107 (8%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
H GVD A G+ + + + G V F + YG +V I H L+ YAH+ + +K G
Sbjct: 190 HSGVDLLAALGTPVEAIAPGTVVFAKEQGTYGNLVIINHNGGLQSRYAHLDSI--NVKVG 247
Query: 318 SFVKKGQIIGRVGSTGLSTG--PHLHFGVYKNSR----PINPLGYIR 358
V +GQ++G VG+TG T PHLHF V +S NP Y++
Sbjct: 248 QKVNQGQLLGTVGTTGQPTAKQPHLHFEVRVSSSLGWVAENPKDYLK 294
>ref|NP_289291.1| (NC_002655) lipoprotein [Escherichia coli O157:H7 EDL933]
ref|NP_311623.1| (NC_002695) putative lipoprotein [Escherichia coli O157:H7]
gb|AAG57849.1|AE005502_3 (AE005502) lipoprotein [Escherichia coli O157:H7 EDL933]
dbj|BAB37019.1| (AP002562) putative lipoprotein [Escherichia coli O157:H7]
Length = 379
Score = 55.1 bits (131), Expect = 1e-06
Identities = 44/135 (32%), Positives = 64/135 (46%), Gaps = 12/135 (8%)
Query: 232 ETPVKYTRISSPFSYGRFHPVLKVRRP-------HYGVDYAAKHGSLIHSASDGRVGFMG 284
E V T S+P S R+ KV + G+D A G I + +DGRV + G
Sbjct: 245 EPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAG 304
Query: 285 -VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF 342
GYG ++ I H ++ YAH +++ VK GQ I +GSTG S+ LHF
Sbjct: 305 NALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQEVKAGQKIATMGSTGTSS-TRLHF 361
Query: 343 GVYKNSRPINPLGYI 357
+ + +NPL Y+
Sbjct: 362 EIRYKGKSVNPLRYL 376
>pir||S45580 hypothetical protein X (rpoS 5' region) - Escherichia coli
dbj|BAA04487.1| (D17549) ORF-X protein [Escherichia coli]
Length = 281
Score = 55.1 bits (131), Expect = 1e-06
Identities = 44/135 (32%), Positives = 64/135 (46%), Gaps = 12/135 (8%)
Query: 232 ETPVKYTRISSPFSYGRFHPVLKVRRP-------HYGVDYAAKHGSLIHSASDGRVGFMG 284
E V T S+P S R+ KV + G+D A G I + +DGRV + G
Sbjct: 147 EPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAG 206
Query: 285 -VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF 342
GYG ++ I H ++ YAH +++ VK GQ I +GSTG S+ LHF
Sbjct: 207 NALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQEVKAGQKIATMGSTGTSS-TRLHF 263
Query: 343 GVYKNSRPINPLGYI 357
+ + +NPL Y+
Sbjct: 264 EIRYKGKSVNPLRYL 278
>ref|NP_417222.1| (NC_000913) lipoprotein [Escherichia coli K12]
sp|P33648|NLPD_ECOLI Lipoprotein nlpD precursor
pir||B55522 lipoprotein D precursor - Escherichia coli
gb|AAA17875.1| (L07869) lipoprotein precursor [Escherichia coli]
gb|AAA69252.1| (U29579) lipoprotein NlpD precursor [Escherichia coli]
gb|AAC75784.1| (AE000358) lipoprotein [Escherichia coli K12]
prf||2018294A lipoprotein [Escherichia coli]
Length = 379
Score = 55.1 bits (131), Expect = 1e-06
Identities = 44/135 (32%), Positives = 64/135 (46%), Gaps = 12/135 (8%)
Query: 232 ETPVKYTRISSPFSYGRFHPVLKVRRP-------HYGVDYAAKHGSLIHSASDGRVGFMG 284
E V T S+P S R+ KV + G+D A G I + +DGRV + G
Sbjct: 245 EPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAG 304
Query: 285 -VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF 342
GYG ++ I H ++ YAH +++ VK GQ I +GSTG S+ LHF
Sbjct: 305 NALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQEVKAGQKIATMGSTGTSS-TRLHF 361
Query: 343 GVYKNSRPINPLGYI 357
+ + +NPL Y+
Sbjct: 362 EIRYKGKSVNPLRYL 376
>gb|AAG53882.1|AF275947_1 (AF275947) lipoprotein NlpD [Escherichia coli]
Length = 164
Score = 55.1 bits (131), Expect = 1e-06
Identities = 44/135 (32%), Positives = 64/135 (46%), Gaps = 12/135 (8%)
Query: 232 ETPVKYTRISSPFSYGRFHPVLKVRRP-------HYGVDYAAKHGSLIHSASDGRVGFMG 284
E V T S+P S R+ KV + G+D A G I + +DGRV + G
Sbjct: 30 EPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAG 89
Query: 285 -VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF 342
GYG ++ I H ++ YAH +++ VK GQ I +GSTG S+ LHF
Sbjct: 90 NALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQEVKAGQKIATMGSTGTSS-TRLHF 146
Query: 343 GVYKNSRPINPLGYI 357
+ + +NPL Y+
Sbjct: 147 EIRYKGKSVNPLRYL 161
>gb|AAF05333.1|AF182102_1 (AF182102) lipoprotein [Escherichia coli]
gb|AAF05337.1|AF182104_1 (AF182104) lipoprotein [Escherichia coli]
gb|AAF05339.1|AF182105_1 (AF182105) lipoprotein [Escherichia coli]
gb|AAF05341.1|AF182106_1 (AF182106) lipoprotein [Escherichia coli]
gb|AAF05343.1|AF182107_1 (AF182107) lipoprotein [Escherichia coli]
Length = 162
Score = 55.1 bits (131), Expect = 1e-06
Identities = 44/135 (32%), Positives = 64/135 (46%), Gaps = 12/135 (8%)
Query: 232 ETPVKYTRISSPFSYGRFHPVLKVRRP-------HYGVDYAAKHGSLIHSASDGRVGFMG 284
E V T S+P S R+ KV + G+D A G I + +DGRV + G
Sbjct: 28 EPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAG 87
Query: 285 -VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF 342
GYG ++ I H ++ YAH +++ VK GQ I +GSTG S+ LHF
Sbjct: 88 NALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQEVKAGQKIATMGSTGTSS-TRLHF 144
Query: 343 GVYKNSRPINPLGYI 357
+ + +NPL Y+
Sbjct: 145 EIRYKGKSVNPLRYL 159
>ref|NP_284407.1| (NC_003116) putative membrane peptidase [Neisseria meningitidis
Z2491]
pir||G81864 probable membrane peptidase NMA1692 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB84920.1| (AL162756) putative membrane peptidase [Neisseria meningitidis
Z2491]
Length = 415
Score = 55.1 bits (131), Expect = 1e-06
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKA-GYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
GVD A G + +A+DG+V + G GYG +V I H + Y H G +G
Sbjct: 318 GVDIAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHNSSFLTAYGHNQKLLVG--EGQ 375
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK+GQ + +G+T S LHF V +N +P+NP YI
Sbjct: 376 QVKRGQQVALMGNTEASR-TQLHFEVRQNGKPVNPNSYI 413
>ref|NP_627576.1| (NC_003888) putative peptidase (putative secreted protein)
[Streptomyces coelicolor A3(2)]
pir||T36379 probable peptidase - Streptomyces coelicolor
emb|CAB40868.1| (AL049628) putative peptidase (putative secreted protein)
[Streptomyces coelicolor A3(2)]
Length = 228
Score = 54.7 bits (130), Expect = 2e-06
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAG---------YGKVVEI-HLNELRLVYAHMS 308
H G D+A G+ + +A G V VKAG YG + I H N YAH+S
Sbjct: 116 HSGQDFAVPIGTNVVAAHGGTV----VKAGGNGAGDGPAYGNAIVIKHGNGTYSQYAHLS 171
Query: 309 AFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKN---SRPINPLGYIR 358
+K G VK GQ I + G+TG S+GPHLHF + ++P+ ++R
Sbjct: 172 RI--NVKIGQIVKTGQSIAKSGNTGNSSGPHLHFEIRTTPNYGSAVDPVAFLR 222
>ref|NP_643350.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37886.1| (AE011946) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 283
Score = 54.7 bits (130), Expect = 2e-06
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 15/102 (14%)
Query: 260 YGVDYAAKHGSLIHSASDGRVGFMGVK------------AGYGKVVEI-HLNELRLVYAH 306
Y VD+A G+ + +A +G V M V+ AG G +V + H + +YAH
Sbjct: 159 YAVDFAMPQGTPVLAAREGVV--MQVQRDVLDSTPNDPTAGGGNLVRVLHADGSMALYAH 216
Query: 307 MSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNS 348
++ ++ G V+ G+ +G G+TG ST PHLHF + +N+
Sbjct: 217 LAPNGVAVRPGQAVRTGERLGTSGNTGFSTAPHLHFAIQRNA 258
>ref|NP_630845.1| (NC_003888) putative secreted peptidase [Streptomyces coelicolor
A3(2)]
pir||T35413 probable secreted peptidase - Streptomyces coelicolor
emb|CAB39706.1| (AL049485) putative secreted peptidase [Streptomyces coelicolor
A3(2)]
Length = 312
Score = 54.7 bits (130), Expect = 2e-06
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRLV-YAHMSAFANGLKKG 317
H G D+ G+ + + G V G YG V I L + YAH+S+ + + G
Sbjct: 205 HTGTDFVVPTGTSLKAVGAGTVVSAGWGGAYGNQVVIQLADGHYAQYAHLSSLS--VSAG 262
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKN---SRPINPLGYIRT 359
V GQ +G G+TG TGPHLHF + I+PL ++R+
Sbjct: 263 QSVTAGQQVGLSGATGNVTGPHLHFEIRTTPDYGSDIDPLAFLRS 307
>gb|AAF73517.1| (AF244357) lipoprotein precursor NlpD [Coxiella burnetii]
Length = 230
Score = 54.7 bits (130), Expect = 2e-06
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKA-GYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G++ A +G + +ASDG V + G GYG ++ + H N YA +K+GS
Sbjct: 134 GINIAGHYGEAVRAASDGVVVYSGAGIRGYGNLIIVKHTNTYLSAYAFNKRVL--VKEGS 191
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
V+ GQ I +G T S LHF + +N +P+NPL Y+
Sbjct: 192 RVRAGQKIAEMGRTN-SGRVMLHFEIRRNGQPVNPLRYL 229
>ref|NP_298277.1| (NC_002488) hypothetical protein [Xylella fastidiosa 9a5c]
pir||C82736 hypothetical protein XF0987 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF83797.1|AE003937_1 (AE003937) hypothetical protein [Xylella fastidiosa 9a5c]
Length = 285
Score = 54.7 bits (130), Expect = 2e-06
Identities = 38/118 (32%), Positives = 59/118 (49%), Gaps = 4/118 (3%)
Query: 239 RISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMG--VKAGYGKVVEIH 296
RIS F R + H G+D A G+ + + + G + F + G V+ H
Sbjct: 163 RISGRFGSARIYNGQTAGNGHSGMDIATATGTPVKAPAAGVITFAAPDLYLTGGTVLLDH 222
Query: 297 LNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPL 354
+ + H+S +K G V +GQ+IG VG+TG +TGPHLH+G+ + I+PL
Sbjct: 223 GAGVSSNFLHLSRI--DVKVGDHVDQGQVIGAVGATGRATGPHLHWGMNWFNVRIDPL 278
>ref|NP_640380.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM34916.1| (AE011625) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 411
Score = 54.7 bits (130), Expect = 2e-06
Identities = 32/112 (28%), Positives = 56/112 (49%), Gaps = 3/112 (2%)
Query: 248 RFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAH 306
RF+ L GV A G+ + + +DG V F GYG ++ + H N +YAH
Sbjct: 300 RFNATLPDGHTSKGVLIGAPKGTTVTAVADGTVVFSDWMTGYGMILIVDHGNGYMSLYAH 359
Query: 307 MSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR 358
G+ +K+G + +VGS+G P L+F + +N +P++P +++
Sbjct: 360 NDTLLRDA--GATIKRGDAVAKVGSSGGQGVPALYFELRRNGQPVDPSSWLQ 409
>gb|AAG27176.1|AF270497_1 (AF270497) lipoprotein [Escherichia coli]
Length = 176
Score = 54.3 bits (129), Expect = 2e-06
Identities = 44/135 (32%), Positives = 64/135 (46%), Gaps = 12/135 (8%)
Query: 232 ETPVKYTRISSPFSYGRFHPVLKVRRP-------HYGVDYAAKHGSLIHSASDGRVGFMG 284
E V T S+P S R+ KV + G+D A G I + +DGRV + G
Sbjct: 42 EPIVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAG 101
Query: 285 -VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF 342
GYG ++ I H ++ YAH +++ VK GQ I +GSTG S+ LHF
Sbjct: 102 NALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQEVKAGQKIATMGSTGTSS-TRLHF 158
Query: 343 GVYKNSRPINPLGYI 357
+ + +NPL Y+
Sbjct: 159 EIRYKGKSVNPLRYL 173
>ref|NP_457314.1| (NC_003198) lipoprotein NlpD precursor [Salmonella enterica subsp.
enterica serovar Typhi]
sp|Q56131|NLPD_SALTI Lipoprotein nlpD precursor
emb|CAD06031.1| (AL627276) lipoprotein NlpD precursor [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 373
Score = 53.9 bits (128), Expect = 3e-06
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D A G I + +DGRV + G GYG ++ I H ++ YAH +++
Sbjct: 275 GIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQ 332
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK GQ I +GSTG S+ LHF + + +NPL Y+
Sbjct: 333 EVKAGQKIATMGSTGTSS-TRLHFEIRYKGKSVNPLRYL 370
>ref|NP_461846.1| (NC_003197) lipoprotein [Salmonella typhimurium LT2]
sp|P40827|NLPD_SALTY Lipoprotein nlpD precursor
gb|AAL21805.1| (AE008833) lipoprotein [Salmonella typhimurium LT2]
Length = 377
Score = 53.9 bits (128), Expect = 3e-06
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D A G I + +DGRV + G GYG ++ I H ++ YAH +++
Sbjct: 279 GIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQ 336
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK GQ I +GSTG S+ LHF + + +NPL Y+
Sbjct: 337 EVKAGQKIATMGSTGTSS-TRLHFEIRYKGKSVNPLRYL 374
>ref|NP_601699.1| (NC_003450) COG0739:Membrane proteins related to
metalloendopeptidases [Corynebacterium glutamicum]
Length = 191
Score = 53.9 bits (128), Expect = 3e-06
Identities = 33/101 (32%), Positives = 53/101 (51%), Gaps = 4/101 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRL-VYAHMSAFANGLKKG 317
H G+D A G+ I++ G V G +GYG+ + I ++ + +Y HM + G
Sbjct: 86 HNGIDIANSIGTPIYAVMAGTVISSGPASGYGQWIRIQHDDGSISIYGHMEYLY--VSVG 143
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNS-RPINPLGYI 357
V GQ I +GS G STG HLHF ++ + P++P ++
Sbjct: 144 ERVAAGQEIAGMGSQGFSTGSHLHFEIHPDGVTPVDPQAWL 184
>emb|CAA76806.1| (Y17610) NlpD [Salmonella typhi]
Length = 105
Score = 53.9 bits (128), Expect = 3e-06
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D A G I + +DGRV + G GYG ++ I H ++ YAH +++
Sbjct: 7 GIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQ 64
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK GQ I +GSTG S+ LHF + + +NPL Y+
Sbjct: 65 EVKAGQKIATMGSTGTSS-TRLHFEIRYKGKSVNPLRYL 102
>sp|P39700|NLPD_SALDU Lipoprotein nlpD precursor
emb|CAA06881.1| (AJ006131) nlpD [Salmonella enterica subsp. enterica serovar
Dublin]
Length = 377
Score = 53.9 bits (128), Expect = 3e-06
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D A G I + +DGRV + G GYG ++ I H ++ YAH +++
Sbjct: 279 GIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQ 336
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK GQ I +GSTG S+ LHF + + +NPL Y+
Sbjct: 337 EVKAGQKIATMGSTGTSS-TRLHFEIRYKGKSVNPLRYL 374
>dbj|BAB99890.1| (AP005281) Membrane proteins related to metalloendopeptidases
[Corynebacterium glutamicum ATCC 13032]
Length = 205
Score = 53.9 bits (128), Expect = 3e-06
Identities = 33/101 (32%), Positives = 53/101 (51%), Gaps = 4/101 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRL-VYAHMSAFANGLKKG 317
H G+D A G+ I++ G V G +GYG+ + I ++ + +Y HM + G
Sbjct: 100 HNGIDIANSIGTPIYAVMAGTVISSGPASGYGQWIRIQHDDGSISIYGHMEYLY--VSVG 157
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNS-RPINPLGYI 357
V GQ I +GS G STG HLHF ++ + P++P ++
Sbjct: 158 ERVAAGQEIAGMGSQGFSTGSHLHFEIHPDGVTPVDPQAWL 198
>pir||S58445 lipoprotein D - Salmonella typhimurium (fragment)
emb|CAA57297.1| (X81641) NlpD [Salmonella typhi]
Length = 119
Score = 53.9 bits (128), Expect = 3e-06
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D A G I + +DGRV + G GYG ++ I H ++ YAH +++
Sbjct: 21 GIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQ 78
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK GQ I +GSTG S+ LHF + + +NPL Y+
Sbjct: 79 EVKAGQKIATMGSTGTSS-TRLHFEIRYKGKSVNPLRYL 116
>gb|AAB62278.1| (L77194) peptidoglycan hydrolase [Staphylococcus aureus]
Length = 322
Score = 53.5 bits (127), Expect = 4e-06
Identities = 42/125 (33%), Positives = 59/125 (46%), Gaps = 21/125 (16%)
Query: 246 YGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG---YGKVVEIHLNELRL 302
YG++H HYGVDYA S ++S +DG V V+AG YG ++ + E
Sbjct: 207 YGQYHG----GGAHYGVDYAMPENSPVYSLTDGTV----VQAGWSNYGGGNQVTIKEANS 258
Query: 303 V----YAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF----GVYKNSRPINPL 354
Y H + + G VK G I GSTG ST PH+HF G N ++P
Sbjct: 259 NNYQWYMHNNRLT--VSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPT 316
Query: 355 GYIRT 359
Y+++
Sbjct: 317 SYLQS 321
>ref|NP_370800.1| (NC_002758) peptidoglycan hydrolase [Staphylococcus aureus subsp.
aureus Mu50]
ref|NP_373511.1| (NC_002745) peptidoglycan hydrolase [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB41489.1| (AP003130) peptidoglycan hydrolase [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB56438.1| (AP003358) peptidoglycan hydrolase [Staphylococcus aureus subsp.
aureus Mu50]
Length = 316
Score = 53.5 bits (127), Expect = 4e-06
Identities = 42/125 (33%), Positives = 59/125 (46%), Gaps = 21/125 (16%)
Query: 246 YGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG---YGKVVEIHLNELRL 302
YG++H HYGVDYA S ++S +DG V V+AG YG ++ + E
Sbjct: 201 YGQYHG----GGAHYGVDYAMPENSPVYSLTDGTV----VQAGWSNYGGGNQVTIKEANS 252
Query: 303 V----YAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF----GVYKNSRPINPL 354
Y H + + G VK G I GSTG ST PH+HF G N ++P
Sbjct: 253 NNYQWYMHNNRLT--VSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPT 310
Query: 355 GYIRT 359
Y+++
Sbjct: 311 SYLQS 315
>ref|NP_655331.1| (NC_003995) Peptidase_M37, Peptidase family M23/M37 [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 411
Score = 53.5 bits (127), Expect = 4e-06
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVV----EIHLNELRLVYAHMSAFANGL 314
H G+D AA I +A+DG V + + YG VV I+ VYAHMS+ +
Sbjct: 303 HKGIDIAASGTVPIIAAADGVVIRSELSSSYGNVVYLSHRINGKTYTTVYAHMSS--RSV 360
Query: 315 KKGSFVKKGQIIGRVGSTGLSTGPHLHFGVY 345
G VK+G +G +G+TG S G HLHF ++
Sbjct: 361 SNGQTVKQGTQLGFMGNTGQSYGQHLHFELH 391
>gb|AAD51395.1|AF117715_4 (AF117715) novel lipoprotein homolog [Legionella pneumophila]
Length = 247
Score = 53.5 bits (127), Expect = 4e-06
Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 19/237 (8%)
Query: 127 TRKEKTLLLSLQTSPYQDIIKATNDPLLANQLMNAYKKSVPFKRLVKNDKIAIVYTRDYR 186
TR + + L+ PY K A++ ++RL N+ + Y+ R
Sbjct: 23 TRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAINNHLRPPYS--LR 80
Query: 187 VGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVAGFLLETPVKYTRISSPFSY 246
VGQ + + + +SN ++ +N H Q+ + +P R SS + +
Sbjct: 81 VGQV-----LSLKGIVPKSNHFHSAPRANLHITHKPKQKT----IYSPAYNVRSSSGWLW 131
Query: 247 ---GRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVK-AGYGKVVEI-HLNELR 301
GR + G++ A G + +++ G V + G AGYG ++ I H NE
Sbjct: 132 PVTGRVVTTFIPSQGKKGINIACNRGDKVRASASGVVAYAGSGLAGYGNLIIIKHSNEYL 191
Query: 302 LVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR 358
Y + + N + +G V GQ+I G S +HF + + P+NPL Y++
Sbjct: 192 TAYGNNAR--NLVTEGQRVNAGQVIAEAGLIDRSYWG-VHFEIRRAGVPVNPLNYLQ 245
>ref|NP_299982.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||B82525 conserved hypothetical protein XF2705 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF85502.1|AE004076_7 (AE004076) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 455
Score = 53.5 bits (127), Expect = 4e-06
Identities = 35/115 (30%), Positives = 61/115 (52%), Gaps = 6/115 (5%)
Query: 245 SYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLV 303
SYG P ++ + GV AA G+ + + +DG V F GYG ++ + H N +
Sbjct: 344 SYGGALPDGRISK---GVLIAAPAGNNVVAVADGMVVFAEWMTGYGMILIVDHGNGYMSL 400
Query: 304 YAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR 358
YA+ G++VK+G+++ +VG +G L+F + N +PINPL +++
Sbjct: 401 YANNDTLLRN--PGTYVKRGELVAKVGRSGGQGVSALYFELRHNGQPINPLSWLQ 453
>ref|NP_645067.1| (NC_003923) peptidoglycan hydrolase [Staphylococcus aureus subsp.
aureus MW2]
dbj|BAB94117.1| (AP004823) peptidoglycan hydrolase [Staphylococcus aureus subsp.
aureus MW2]
Length = 316
Score = 53.5 bits (127), Expect = 4e-06
Identities = 42/125 (33%), Positives = 59/125 (46%), Gaps = 21/125 (16%)
Query: 246 YGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAG---YGKVVEIHLNELRL 302
YG++H HYGVDYA S ++S +DG V V+AG YG ++ + E
Sbjct: 201 YGQYHG----GGAHYGVDYAMPENSPVYSLTDGTV----VQAGWSNYGGGNQVTIKEANS 252
Query: 303 V----YAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF----GVYKNSRPINPL 354
Y H + + G VK G I GSTG ST PH+HF G N ++P
Sbjct: 253 NNYQWYMHNNRLT--VSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPT 310
Query: 355 GYIRT 359
Y+++
Sbjct: 311 SYLQS 315
>ref|NP_653439.1| (NC_003995) Peptidase_M37, Peptidase family M23/M37 [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 327
Score = 53.5 bits (127), Expect = 4e-06
Identities = 35/101 (34%), Positives = 50/101 (48%), Gaps = 8/101 (7%)
Query: 256 RRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIH-LNELRLVYAHMSAFANGL 314
RR H G D A +G + S G + G G + I L+ YAH+ F+ +
Sbjct: 201 RRVHEGTDIFAGYGVPVRSTCYGIIETKGWNRLGGWRIGIRDLHNNYHYYAHLGGFSKEI 260
Query: 315 KKGSFVKKGQIIGRVGSTGLST-------GPHLHFGVYKNS 348
+ G V+ G++IG VGSTG PHLHFG+YK++
Sbjct: 261 QLGQIVEPGKVIGFVGSTGYGPPGTAGKFPPHLHFGMYKDN 301
>ref|NP_628955.1| (NC_003888) putative peptidase [Streptomyces coelicolor A3(2)]
emb|CAB92661.1| (AL356832) putative peptidase [Streptomyces coelicolor A3(2)]
Length = 565
Score = 53.1 bits (126), Expect = 6e-06
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNE-LRLVYAHMSAFANGLKKG 317
H G+D+ G+ + +A+DG V + YG ++ + + Y H+S++ + G
Sbjct: 460 HTGIDFPVLQGTTVMAATDGTVRTQ-FNSAYGNMMIVTAKDGTETWYCHLSSYQ--VPSG 516
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVY-KNSRPINPLGYIRT 359
+ VK G I G +G STGPHLHF V I+PL ++R+
Sbjct: 517 TTVKAGDAIAYSGDSGNSTGPHLHFEVRPAGGSSIDPLPWLRS 559
>ref|NP_246446.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03591.1| (AE006187) unknown [Pasteurella multocida]
Length = 409
Score = 52.8 bits (125), Expect = 7e-06
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRL-VYAHMSAFANGLKKGSF 319
G+ A G+ + S +DGRV GYG +V I E L +Y + + +K+G F
Sbjct: 313 GMVIGANAGTAVKSIADGRVILANWLQGYGLMVIIKHGENDLSLYGYNQSVV--VKEGQF 370
Query: 320 VKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIR 358
VK GQ I VGS+G + L+F + + +NP+G+++
Sbjct: 371 VKAGQKIAEVGSSGGQSQSSLYFEIRRKGVAVNPIGWLK 409
>ref|NP_442898.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
pir||S76798 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA18710.1| (D90916) ORF_ID:sll1488~unknown protein [Synechocystis sp. PCC
6803]
Length = 221
Score = 52.8 bits (125), Expect = 7e-06
Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 19/144 (13%)
Query: 225 EVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMG 284
+ A F +E +YT P R P H G+D AA GS I + G V M
Sbjct: 70 QYASFPVENFQQYTSGFGP----RRAPTAGASTFHNGLDLAAPLGSYIRNWWHGTVVEMS 125
Query: 285 VKAGYGKVVEIHLNELRLVYAHMSAFANG---------------LKKGSFVKKGQIIGRV 329
G G +V I + Y H+ L++G V G IGRV
Sbjct: 126 DHTGCGTMVRIQSGPWQHTYCHLMGGVEVHQGQRYLVDRQGGIVLQQGQQVVAGMRIGRV 185
Query: 330 GSTGLSTGPHLHFGVYKNSRPINP 353
G TG +TGPHLH+ + N ++P
Sbjct: 186 GMTGRTTGPHLHWELRHNGVLVDP 209
>ref|NP_642059.1| (NC_003919) lipoprotein [Xanthomonas axonopodis pv. citri str. 306]
gb|AAM36595.1| (AE011804) lipoprotein [Xanthomonas axonopodis pv. citri str. 306]
Length = 259
Score = 52.4 bits (124), Expect = 9e-06
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVK-AGYGKVVEIHLNELRL-VYAHMSAFANGLKKGS 318
GVD A G + +A+DG V + G GYG+++ I N+ L Y H L +G
Sbjct: 161 GVDIAGTSGQAVRAAADGVVVYSGAGLVGYGELIIIKHNDQWLSAYGHNRKRL--LNEGQ 218
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK GQ I +G +G S LHF + N +P++PL Y+
Sbjct: 219 SVKAGQQIAEMGRSGASRDM-LHFEIRYNGKPVDPLLYL 256
>ref|NP_655767.1| (NC_003995) Peptidase_M37, Peptidase family M23/M37 [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 564
Score = 52.4 bits (124), Expect = 9e-06
Identities = 32/92 (34%), Positives = 48/92 (51%), Gaps = 6/92 (6%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLN----ELRLVYAHMSAFANGL 314
H+G+D AA + +A++G + YG VV I N VY H+ + +
Sbjct: 457 HHGLDIAASGTVPVVAAAEGVITRSYYSTSYGNVVFISHNINGQTYTTVYXHLKS--RSV 514
Query: 315 KKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYK 346
G VK+GQ +G +G+TG S G HLHF ++K
Sbjct: 515 SAGQKVKQGQQLGIMGNTGQSEGQHLHFEIHK 546
>ref|NP_252313.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
sp|P45682|NLPD_PSEAE Lipoprotein nlpD/lppB homolog precursor
pir||S55063 hypothetical protein 297 - Pseudomonas aeruginosa
pir||E83193 conserved hypothetical protein PA3623 [imported] - Pseudomonas
aeruginosa (strain PAO1)
dbj|BAA05130.1| (D26134) unnamed protein product [Pseudomonas aeruginosa]
gb|AAG07011.1|AE004782_9 (AE004782) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 297
Score = 52.0 bits (123), Expect = 1e-05
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKA-GYGKVVEIHLNELRLVYAHMSAFANG----LK 315
G+D A + G + +AS G V + G GYG++V I NE ++SA+ + ++
Sbjct: 199 GIDIAGQLGQPVLAASGGTVVYAGSGLRGYGELVIIKHNE-----TYVSAYGHNRRLLVR 253
Query: 316 KGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+G VK GQ I +GSTG LHF + + +P++PL Y+
Sbjct: 254 EGQQVKVGQSIAEMGSTGTDR-VKLHFEIRRQGKPVDPLQYL 294
>ref|NP_643675.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM38211.1| (AE011983) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 239
Score = 52.0 bits (123), Expect = 1e-05
Identities = 31/94 (32%), Positives = 49/94 (51%), Gaps = 4/94 (4%)
Query: 257 RPHYGVDYAAKHGSLIHSASDGRVG--FMGVKAGYGKVVEIHLNELRLVYAHMSAFANGL 314
R H +D A G+ + + +DG V F + G + YAH+ +A+GL
Sbjct: 120 RVHDAIDILAPTGTPVVAVADGTVEKLFTSDRGGLTVYQFEPSGKYCYYYAHLERYADGL 179
Query: 315 KKGSFVKKGQIIGRVGSTGLS--TGPHLHFGVYK 346
+ +K+GQ+IG VGSTG + PHLHF +++
Sbjct: 180 AEKQSIKRGQVIGYVGSTGNANPAAPHLHFEIHR 213
>gb|AAL16090.1|AF421351_2 (AF421351) murein endopeptidase [Azotobacter vinelandii]
Length = 217
Score = 52.0 bits (123), Expect = 1e-05
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKA-GYGKVVEIHLNELRL-VYAHMSAFANGLKKGS 318
G+D + G + +ASDG V + G GYG+++ I +++ + Y H +++G
Sbjct: 119 GIDIGGQLGQPVLAASDGSVVYAGGGLRGYGELIIIKHSDVYVSAYGHNRRLL--VREGQ 176
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK GQ+I +GSTG + LHF + + +P++PL Y+
Sbjct: 177 QVKAGQVIAEMGSTG-TDRVKLHFEIRRQGKPVDPLQYL 214
>ref|NP_421051.1| (NC_002696) peptidase, M23/M37 family [Caulobacter crescentus CB15]
gb|AAK24219.1| (AE005895) peptidase, M23/M37 family [Caulobacter crescentus CB15]
Length = 266
Score = 51.6 bits (122), Expect = 2e-05
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 228 GFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFM--GV 285
GF+L PV R S+ F R + RRPHYGVD A G+ + S + V F G+
Sbjct: 133 GFIL--PVVGARRSARFGGQRILNG-EPRRPHYGVDLAVPVGTPVRSPASAIVAFAETGL 189
Query: 286 KAGYGKVVEIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVY 345
G ++ H L Y H+S + G++V++G + G G +TGPHL + +
Sbjct: 190 HFEGGLLLLDHGQGLVTAYLHLSKTL--VSPGTYVRRGDEVALTGKEGRATGPHLCWRMK 247
Query: 346 KNSRPINP 353
R ++P
Sbjct: 248 WRGRNMDP 255
>ref|NP_637079.1| (NC_003902) lipoprotein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gb|AAM41003.1| (AE012272) lipoprotein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
Length = 266
Score = 51.2 bits (121), Expect = 2e-05
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVK-AGYGKVVEIHLNELRL-VYAHMSAFANGLKKGS 318
GVD A G + +A+DG V + G GYG+++ I N+ L Y H L +G
Sbjct: 168 GVDIAGASGQAVRAAADGVVVYSGAGLVGYGELIIIKHNDQWLSAYGHNRKRL--LNEGQ 225
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK GQ I +G +G + LHF + N +P++PL Y+
Sbjct: 226 SVKAGQQIAEMGRSGAARDM-LHFEIRYNGKPVDPLLYL 263
>sp|Q46798|YGER_ECOLI Hypothetical lipoprotein ygeR precursor
Length = 251
Score = 50.8 bits (120), Expect = 3e-05
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVK-AGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D +A G+ I++A G+V ++G + GYG ++ I H + YAH + G
Sbjct: 147 GIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTML--VNNGQ 204
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSK 363
VK GQ I +GST + LHF + + I+PL Y+ SK
Sbjct: 205 SVKAGQKIATMGSTD-AASVRLHFQIRYRATAIDPLRYLPPQGSK 248
>ref|NP_417341.1| (NC_000913) putative lipoprotein [Escherichia coli K12]
pir||A65070 hypothetical protein b2865 - Escherichia coli (strain K-12)
gb|AAA83046.1| (U28375) UUG start [Escherichia coli]
gb|AAC75903.1| (AE000369) putative lipoprotein [Escherichia coli K12]
Length = 259
Score = 50.8 bits (120), Expect = 3e-05
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVK-AGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D +A G+ I++A G+V ++G + GYG ++ I H + YAH + G
Sbjct: 155 GIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTML--VNNGQ 212
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSK 363
VK GQ I +GST + LHF + + I+PL Y+ SK
Sbjct: 213 SVKAGQKIATMGSTD-AASVRLHFQIRYRATAIDPLRYLPPQGSK 256
>ref|NP_311765.1| (NC_002695) putative lipoprotein [Escherichia coli O157:H7]
dbj|BAB37161.1| (AP002563) putative lipoprotein [Escherichia coli O157:H7]
Length = 259
Score = 50.8 bits (120), Expect = 3e-05
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVK-AGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D +A G+ I++A G+V ++G + GYG ++ I H + YAH + G
Sbjct: 155 GIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTML--VNNGQ 212
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSK 363
VK GQ I +GST + LHF + + I+PL Y+ SK
Sbjct: 213 SVKAGQKIATMGSTD-AASVRLHFQIRYRATAIDPLRYLPPQGSK 256
>ref|NP_406819.1| (NC_003143) lipoprotein [Yersinia pestis]
emb|CAC92586.1| (AJ414156) lipoprotein [Yersinia pestis]
Length = 333
Score = 50.8 bits (120), Expect = 3e-05
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D A G I + + GRV + G GYG ++ I H ++ YAH +++
Sbjct: 235 GIDIAGSRGQPILATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQ 292
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK GQ I +GSTG S+ LHF + + +NPL Y+
Sbjct: 293 EVKAGQKIATMGSTGTSS-VRLHFEIRYKGKSVNPLRYL 330
>gb|AAF05335.1|AF182103_1 (AF182103) lipoprotein [Escherichia coli]
Length = 155
Score = 50.8 bits (120), Expect = 3e-05
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 232 ETPVKYTRISSPFSYGRFHPVLKVRRP-------HYGVDYAAKHGSLIHSASDGRVGFMG 284
E V T S+P S R+ KV + G+D A G I + +DGRV + G
Sbjct: 28 EPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAG 87
Query: 285 -VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHF 342
GYG ++ I H ++ YAH +++ VK GQ I +GSTG S+ LHF
Sbjct: 88 NALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQEVKAGQKIATMGSTGTSS-TRLHF 144
Query: 343 GVYKNSRPINP 353
+ + +NP
Sbjct: 145 EIRYKGKSVNP 155
>ref|NP_294321.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||F75498 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10178.1|AE001918_3 (AE001918) conserved hypothetical protein [Deinococcus radiodurans]
Length = 197
Score = 50.4 bits (119), Expect = 4e-05
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 257 RPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLK 315
R H G+D A + I + ++G V +G G+ V I R YAH+ + + L
Sbjct: 90 RKHEGIDIFAPRDTPIRATTEGIVLNVGPNTLGGRTVMILGPGGQRHYYAHLDRYPD-LT 148
Query: 316 KGSFVKKGQIIGRVGSTGLSTGP--HLHFGVYKNSRPINP 353
G +V G ++G VG +G + G HLH+G+Y + INP
Sbjct: 149 AGEWVNSGDVVGYVGDSGNAKGTPTHLHYGIYTAAGAINP 188
>ref|NP_457436.1| (NC_003198) possible lipoprotein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD02868.1| (AL627277) possible lipoprotein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 250
Score = 50.1 bits (118), Expect = 5e-05
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVK-AGYGKVVEIHLNELRL-VYAHMSAFANGLKKGS 318
G+D A G+ +++A G+V ++G + GYG ++ I NE + YAH + G
Sbjct: 146 GIDIAGARGTPVYAAGAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDTML--VNNGQ 203
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSK 363
VK GQ I +GST + LHF + + I+PL Y+ SK
Sbjct: 204 SVKAGQKIATMGSTD-AASVRLHFQIRYRATAIDPLRYLPPQGSK 247
>gb|AAF80360.1|AF157831_2 (AF157831) 43 kDa antigen [Bartonella bacilliformis]
Length = 401
Score = 50.1 bits (118), Expect = 5e-05
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFM--GVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
G+D GS + +A +G V + G+K G VV I H + + +Y H S + +G
Sbjct: 303 GIDINVPEGSSVKAAENGVVIYASDGLKE-LGNVVMIRHEDNIITIYGHNSKLT--VSRG 359
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK+G I + G +G +T P ++F + +NS P+NP Y+
Sbjct: 360 QRVKRGDEIAKSGVSGDATTPRVYFEIRQNSVPVNPAQYL 399
>ref|NP_461954.1| (NC_003197) putative metalloendopeptidase [Salmonella typhimurium
LT2]
gb|AAL21913.1| (AE008839) putative metalloendopeptidase [Salmonella typhimurium
LT2]
Length = 252
Score = 50.1 bits (118), Expect = 5e-05
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVK-AGYGKVVEIHLNELRL-VYAHMSAFANGLKKGS 318
G+D A G+ +++A G+V ++G + GYG ++ I NE + YAH + G
Sbjct: 148 GIDIAGARGTPVYAAGAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDTML--VNNGQ 205
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSK 363
VK GQ I +GST + LHF + + I+PL Y+ SK
Sbjct: 206 SVKAGQKIATMGSTD-AASVRLHFQIRYRATAIDPLRYLPPQGSK 249
>gb|AAB88077.1| (U81296) lipoprotein [Sinorhizobium meliloti]
Length = 512
Score = 50.1 bits (118), Expect = 5e-05
Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 187 VGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVAGFLLETPVKYTR---ISSP 243
+G+ G + A VS++ N+ S G ++KA + E ++ +
Sbjct: 327 LGENTGTDAVVTASVSAKKNEAQAASTEQGKLTETKAPAAKESVSEVAIRSDGNEDLPKS 386
Query: 244 FSYGRFH-PVLKVRRPHYG----------VDYAAKHGSLIHSASDGRVGFMG--VKAGYG 290
G++ PV YG ++ + G+ I +A +G V + G +K
Sbjct: 387 TGIGKYRWPVRGAVVAAYGANVDGNRNDGINISVPEGTPIKAAENGVVIYSGSSLKELGN 446
Query: 291 KVVEIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRP 350
V+ H + VY + + +++G V++GQ + G TG +T P +HF V KN+ P
Sbjct: 447 AVLVRHDDGTVTVYGNAAELK--VQRGQKVQRGQTLASSGMTGRATRPQVHFEVRKNATP 504
Query: 351 INPLGYI 357
+NP Y+
Sbjct: 505 VNPATYL 511
>gb|AAC38174.1| (AF000945) lipoprotein [Vibrio cholerae]
Length = 153
Score = 49.7 bits (117), Expect = 6e-05
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEIHLNELRL-VYAHMSAFANGLKKGS 318
G+D A + G + + +DG V + G GYG ++ I NE L YAH K+G
Sbjct: 57 GIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLL--AKEGQ 114
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
V+ GQ I +GS+G + LHF + + +NP Y+
Sbjct: 115 TVQAGQKIATMGSSG-TNSVRLHFEIRYQGKSVNPKRYL 152
>ref|NP_230184.1| (NC_002505) lipoprotein NlpD [Vibrio cholerae]
pir||H82311 lipoprotein NlpD VC0533 [imported] - Vibrio cholerae (group O1
strain N16961)
gb|AAF93701.1| (AE004139) lipoprotein NlpD [Vibrio cholerae]
Length = 311
Score = 49.7 bits (117), Expect = 6e-05
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEIHLNELRL-VYAHMSAFANGLKKGS 318
G+D A + G + + +DG V + G GYG ++ I NE L YAH K+G
Sbjct: 215 GIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLL--AKEGQ 272
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
V+ GQ I +GS+G + LHF + + +NP Y+
Sbjct: 273 TVQAGQKIATMGSSG-TNSVRLHFEIRYQGKSVNPKRYL 310
>ref|NP_440919.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
pir||S77265 hypothetical protein slr0878 - Synechocystis sp. (strain PCC 6803)
dbj|BAA17599.1| (D90907) ORF_ID:slr0878~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 245
Score = 49.3 bits (116), Expect = 8e-05
Identities = 41/110 (37%), Positives = 55/110 (49%), Gaps = 10/110 (9%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
H GVD A + + +A+ G V + + YG +V I H N + YAH+S FA + G
Sbjct: 139 HSGVDLLAPLDTPVMAAAAGEVILVSQEGAYGFLVVIDHGNGRQTRYAHLSRFA--VDPG 196
Query: 318 SFVKKGQIIGRVGSTGLS--TGPHLHFGVYKNSRPINPLGYIRTAKSKLH 365
V G +IG VGSTG HLHF V R +P+G+ KLH
Sbjct: 197 EKVPAGTVIGYVGSTGRPDIASSHLHFEV----RVQSPVGW-AAQDPKLH 241
>ref|NP_642677.1| (NC_003919) peptidase [Xanthomonas axonopodis pv. citri str. 306]
gb|AAM37213.1| (AE011873) peptidase [Xanthomonas axonopodis pv. citri str. 306]
Length = 280
Score = 49.3 bits (116), Expect = 8e-05
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMG--VKAGYGKVVEIHLNELRLVYAHMSAFANGLKK 316
H G+D A G+ + + + G V F + G V+ H + + H+S +K
Sbjct: 178 HSGMDIAVPTGTPVKAPAAGVVTFAAPDLYLTGGTVLLDHGFGVSSNFLHLSRI--DVKV 235
Query: 317 GSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAK 361
G V++GQ+I VG+TG +TGPHLH+G+ I+PL + K
Sbjct: 236 GDRVEQGQVIAAVGATGRATGPHLHWGMNWFDTRIDPLLVLERTK 280
>gb|AAF20815.1|AF198628_1 (AF198628) NlpD [Xenorhabdus nematophila]
Length = 154
Score = 49.3 bits (116), Expect = 8e-05
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D A G + S + G+V + G GYG ++ I H ++ YAH +++
Sbjct: 56 GIDIAGSRGQPVFSTASGKVVYAGNALRGYGNLIIIKHDDDYLSAYAHNDTML--VREQQ 113
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
V+ GQ I +GSTG S+ LHF + + +NPL Y+
Sbjct: 114 DVQAGQKISTMGSTGTSS-VRLHFEIRYKGKSVNPLRYL 151
>ref|NP_638557.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42481.1| (AE012438) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 243
Score = 49.3 bits (116), Expect = 8e-05
Identities = 31/94 (32%), Positives = 50/94 (52%), Gaps = 4/94 (4%)
Query: 257 RPHYGVDYAAKHGSLIHSASDGRVG-FMGVKAGYGKVVEIHLN-ELRLVYAHMSAFANGL 314
R H +D A G+ + + ++G V K G V + + YAH+ +A+GL
Sbjct: 124 RVHDAIDILAPAGTPVLAVANGTVEKLFDSKRGGLTVYQFEPGGKYCYYYAHLQRYADGL 183
Query: 315 KKGSFVKKGQIIGRVGSTGLS--TGPHLHFGVYK 346
+ +K+GQ+IG VGSTG + PHLHF +++
Sbjct: 184 AEKQVIKRGQLIGYVGSTGNADPAAPHLHFEIHR 217
>ref|NP_629757.1| (NC_003888) hypothetical protein SC2E1.40c [Streptomyces coelicolor
A3(2)]
pir||T34808 hypothetical protein SC2E1.40c SC2E1.40c - Streptomyces coelicolor
emb|CAA19415.1| (AL023797) hypothetical protein SC2E1.40c [Streptomyces coelicolor
A3(2)]
Length = 226
Score = 49.3 bits (116), Expect = 8e-05
Identities = 35/104 (33%), Positives = 51/104 (48%), Gaps = 9/104 (8%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLN-----ELRLVYAHMSAFANG 313
H GVD AA G+ + + + GRV F G G G VV + L LR +A + A
Sbjct: 87 HRGVDLAAGGGAPVRAVAAGRVSFAGPVGGRG-VVSVELTGTGEPPLRTTFAPVDA---A 142
Query: 314 LKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
++KG V G+ +G V TG LH+G+ + +NPL +
Sbjct: 143 VRKGDEVAAGEPLGTVQPTGSHCTACLHWGLLRGEVYLNPLSLL 186
>ref|NP_385642.1| (NC_003047) LIPOPROTEIN PRECURSOR [Sinorhizobium meliloti]
emb|CAC46115.1| (AL591787) LIPOPROTEIN PRECURSOR [Sinorhizobium meliloti]
Length = 512
Score = 48.9 bits (115), Expect = 1e-04
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG--VKAGYGKVVEIHLNELRLVYAHMSAFANGLKKGS 318
G++ + G+ I +A +G V + G +K V+ H + VY + + +++G
Sbjct: 415 GINISVPEGTPIKAAENGVVIYSGSSLKELGNAVLVRHDDGTVTVYGNAAELK--VQRGQ 472
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
V++GQ + G TG +T P +HF V KN+ P+NP Y+
Sbjct: 473 KVQRGQTLASSGMTGRATRPQVHFEVRKNATPVNPATYL 511
>ref|NP_646207.1| (NC_003923) hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
dbj|BAB95255.1| (AP004827) hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
Length = 2066
Score = 48.1 bits (113), Expect = 2e-04
Identities = 31/97 (31%), Positives = 49/97 (49%), Gaps = 6/97 (6%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHL--NELRLVYAHMSAFANGLKK 316
HYG+D+ G+ +++ G + G G ++I NE Y H+S ++
Sbjct: 1707 HYGIDFGMPSGTNVYAVKGGIADKVWTDYGGGNSIQIKTGANEWNW-YMHLSKQL--ARQ 1763
Query: 317 GSFVKKGQIIGRVGSTG-LSTGPHLHFGVYKNSRPIN 352
G +K GQ+IG+ G+TG G HLHF + + S P N
Sbjct: 1764 GQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGN 1800
>ref|NP_075513.1| (NC_002661) orf588 [Staphylococcus aureus temperate phage phiSLT]
dbj|BAB21744.1| (AB045978) orf588 [Staphylococcus aureus temperate phage phiSLT]
Length = 588
Score = 48.1 bits (113), Expect = 2e-04
Identities = 31/97 (31%), Positives = 49/97 (49%), Gaps = 6/97 (6%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHL--NELRLVYAHMSAFANGLKK 316
HYG+D+ G+ +++ G + G G ++I NE Y H+S ++
Sbjct: 229 HYGIDFGMPSGTNVYAVKGGIADKVWTDYGGGNSIQIKTGANEWNW-YMHLSKQL--ARQ 285
Query: 317 GSFVKKGQIIGRVGSTG-LSTGPHLHFGVYKNSRPIN 352
G +K GQ+IG+ G+TG G HLHF + + S P N
Sbjct: 286 GQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGN 322
>gb|AAL82321.1| (AF424782) tail fiber protein [Staphylococcus aureus phage phi 12]
Length = 2066
Score = 48.1 bits (113), Expect = 2e-04
Identities = 32/97 (32%), Positives = 49/97 (49%), Gaps = 6/97 (6%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHL--NELRLVYAHMSAFANGLKK 316
HYG+D+ G+ I++ G + G G ++I NE Y H+S ++
Sbjct: 1707 HYGIDFGMPTGTNIYAVKGGIADKVWTDYGGGNSIQIKTGANEWNW-YMHLSKQL--ARQ 1763
Query: 317 GSFVKKGQIIGRVGSTG-LSTGPHLHFGVYKNSRPIN 352
G +K GQ+IG+ G+TG G HLHF + + S P N
Sbjct: 1764 GQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGN 1800
>ref|NP_218884.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||D71324 conserved hypothetical protein TP0444 - syphilis spirochete
gb|AAC65431.1| (AE001221) conserved hypothetical protein [Treponema pallidum]
Length = 342
Score = 48.1 bits (113), Expect = 2e-04
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 255 VRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRLVYAHMSAFANGL 314
VR YGV ++ + + + G+V G GYG+V+ + + + VY +
Sbjct: 238 VRGKTYGVVIDSERNAAVRALMSGKVISRGTHRGYGQVLFVE-SAGKHVYVYGGLERILP 296
Query: 315 KKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINP 353
K G +V G ++G +G + L+F VYK ++PI+P
Sbjct: 297 KSGDYVSAGDVLGNLGFDAAAARSRLYFMVYKKNKPIDP 335
>gb|AAM49603.1|AF513855_3 (AF513855) phi12 tail fiber protein-like protein [Staphylococcus
aureus bacteriophage phi 3A]
Length = 2066
Score = 47.8 bits (112), Expect = 2e-04
Identities = 31/97 (31%), Positives = 49/97 (49%), Gaps = 6/97 (6%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHL--NELRLVYAHMSAFANGLKK 316
HYG+D+ G+ +++ G + G G ++I NE Y H+S ++
Sbjct: 1707 HYGIDFGMPTGTNVYAVKGGIADKVWTDYGGGNSIQIKTGANEWNW-YMHLSKQL--ARQ 1763
Query: 317 GSFVKKGQIIGRVGSTG-LSTGPHLHFGVYKNSRPIN 352
G +K GQ+IG+ G+TG G HLHF + + S P N
Sbjct: 1764 GQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGN 1800
>ref|NP_637613.1| (NC_003902) peptidase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gb|AAM41537.1| (AE012333) peptidase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
Length = 301
Score = 47.8 bits (112), Expect = 2e-04
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMG--VKAGYGKVVEIHLNELRLVYAHMSAFANGLKK 316
H G+D A G+ + + + G V F + G ++ H + + H+S +K
Sbjct: 199 HSGMDIAVPTGTPVKAPAAGVVTFAAPDLYLTGGTLLLDHGFGISSNFLHLSRI--DVKV 256
Query: 317 GSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAK 361
G V++GQ+I VG+TG +TGPHLH+G+ I+PL + K
Sbjct: 257 GDRVEQGQVIAAVGATGRATGPHLHWGMNWFDVRIDPLLVLERGK 301
>ref|NP_645003.1| (NC_003923) ORFID:MW0188~hypothetical protein, similar to
lysostaphin precursor [Staphylococcus aureus subsp.
aureus MW2]
dbj|BAB94053.1| (AP004822) ORFID:MW0188~hypothetical protein, similar to
lysostaphin precursor [Staphylococcus aureus subsp.
aureus MW2]
Length = 192
Score = 47.8 bits (112), Expect = 2e-04
Identities = 32/87 (36%), Positives = 47/87 (53%), Gaps = 5/87 (5%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI--HLNELRLVYAHMSAFANGLKK 316
HYG+D+A G+ I + ++G+V + GKV++I E Y H+ + +K
Sbjct: 76 HYGIDFALPKGTPIKAPTNGKVTRIFNNELGGKVLQIAEDNGEYHQWYLHLDKY--NVKV 133
Query: 317 GSFVKKGQIIGRVGSTG-LSTGPHLHF 342
G VK G II G+TG +TG HLHF
Sbjct: 134 GDRVKAGDIIAYSGNTGKQTTGAHLHF 160
>ref|NP_370736.1| (NC_002758) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
ref|NP_373449.1| (NC_002745) hypothetical protein, similar to lysostaphin precursor
[Staphylococcus aureus subsp. aureus N315]
dbj|BAB41427.1| (AP003129) ORFID:SA0205~hypothetical protein, similar to
lysostaphin precursor [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB56374.1| (AP003358) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
Length = 192
Score = 47.8 bits (112), Expect = 2e-04
Identities = 32/87 (36%), Positives = 47/87 (53%), Gaps = 5/87 (5%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEI--HLNELRLVYAHMSAFANGLKK 316
HYG+D+A G+ I + ++G+V + GKV++I E Y H+ + +K
Sbjct: 76 HYGIDFALPKGTPIKAPTNGKVTRIFNNELGGKVLQIAEDNGEYHQWYLHLDKY--NVKV 133
Query: 317 GSFVKKGQIIGRVGSTG-LSTGPHLHF 342
G VK G II G+TG +TG HLHF
Sbjct: 134 GDRVKAGDIIAYSGNTGKQTTGAHLHF 160
>sp|P47764|NLPD_YEREN LIPOPROTEIN NLPD
gb|AAC43390.1| (U16152) NlpD [Yersinia enterocolitica]
Length = 97
Score = 47.4 bits (111), Expect = 3e-04
Identities = 32/97 (32%), Positives = 49/97 (49%), Gaps = 5/97 (5%)
Query: 263 DYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFV 320
D A G I + ++GRV + G GYG ++ I H ++ Y H +++ V
Sbjct: 1 DIAGSRGQPIFATANGRVVYAGNALGGYGNLIIIKHNDDYLSAYVHNDTML--VREQEEV 58
Query: 321 KKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
K GQ I +GSTG S+ LHF + + +NPL Y+
Sbjct: 59 KAGQKIATMGSTGTSS-VRLHFEIRYKGKSVNPLRYL 94
>pir||S49470 hypothetical protein - Salmonella choleraesuis (fragment)
emb|CAA57639.1| (X82129) ORF [Salmonella enterica]
Length = 94
Score = 47.4 bits (111), Expect = 3e-04
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 269 GSLIHSASDGRVGFMG-VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQII 326
G I + +DGRV + G GYG ++ I H ++ YAH +++ VK GQ I
Sbjct: 4 GQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTML--VREQQEVKAGQKI 61
Query: 327 GRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+GSTG S+ LHF + + +NPL Y+
Sbjct: 62 ATMGSTGTSS-TRLHFEIRYKGKSVNPLRYL 91
>gb|AAF05318.1|AF178851_1 (AF178851) lipoprotein [Pseudomonas putida]
Length = 97
Score = 47.4 bits (111), Expect = 3e-04
Identities = 32/97 (32%), Positives = 50/97 (50%), Gaps = 5/97 (5%)
Query: 263 DYAAKHGSLIHSASDGRVGFMGVKA-GYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFV 320
D A G + +ASDG V + G GYG+++ I H + Y H +++G V
Sbjct: 1 DIAGDLGQPVFAASDGAVVYAGSGLRGYGELIIIKHSDTYVSAYGHNRRLL--VREGQQV 58
Query: 321 KKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
K GQ I +GSTG LHF + + +P++PL ++
Sbjct: 59 KAGQSIAEMGSTGTDR-VKLHFEIRRQGKPVDPLQFL 94
>ref|NP_391536.1| (NC_000964) alternate gene name: ywnI [Bacillus subtilis]
pir||B69713 required for completion of engulfment spoIIQ - Bacillus subtilis
emb|CAA69855.1| (Y08559) Unknown [Bacillus subtilis]
emb|CAB15672.1| (Z99122) alternate gene name: ywnI [Bacillus subtilis]
Length = 283
Score = 47.4 bits (111), Expect = 3e-04
Identities = 39/140 (27%), Positives = 68/140 (47%), Gaps = 7/140 (5%)
Query: 261 GVDYAAKHGSL--IHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
G+D A K G + ++ G V G VVE+ H + L VY +S + +++G
Sbjct: 121 GIDLAEKDGKDFDVSASLSGTVVKAEKDPVLGYVVEVEHADGLSTVYQSLSEVS--VEQG 178
Query: 318 SFVKKGQIIGRVGSTGLS--TGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEK 375
VK+ Q+IG+ G S +G H+HF + K+ +NPL ++ S + + E
Sbjct: 179 DKVKQNQVIGKSGKNLYSEDSGNHVHFEIRKDGVAMNPLNFMDKPVSSIEKAATQETEES 238
Query: 376 AQRSKQKLEELLKTHSFEKN 395
Q+S +K + + + EK+
Sbjct: 239 IQQSSEKKDGSTEKGTEEKS 258
>gb|AAM75799.1| (AF349457) structural protein [Lactococcus lactis bacteriophage
ul36]
Length = 908
Score = 47.4 bits (111), Expect = 3e-04
Identities = 47/138 (34%), Positives = 63/138 (45%), Gaps = 25/138 (18%)
Query: 240 ISSPFSYG-----RFHPVLKVRRPHYGVDYAAKHGSL-IHSASDGRVGFMGVKAG----- 288
ISSP + R P+ + H +D + + I +++DG+V V+AG
Sbjct: 776 ISSPITVTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASNDGQV----VQAGSNYYD 831
Query: 289 -YGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYK 346
YG I H + L YAH S + G VKKGQ IG +G+TG TGPHLHF
Sbjct: 832 WYGNYTVIKHADGLYTGYAHQSRI--DVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMD 889
Query: 347 NSRPI------NPLGYIR 358
P NP YI+
Sbjct: 890 QYWPSSSAHFKNPRDYIK 907
>ref|NP_246553.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03698.1| (AE006198) unknown [Pasteurella multocida]
Length = 467
Score = 47.4 bits (111), Expect = 3e-04
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D A G +++A+ GRV + G GYG ++ I H ++ YAH + +K
Sbjct: 369 GIDIAGSRGQAVNAAAAGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNESIL--VKDQQ 426
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
V+ GQ I ++GS+G + LHF + + ++P Y+
Sbjct: 427 EVRAGQQIAKMGSSG-TNSVKLHFEIRYKGKSVDPTRYL 464
>ref|NP_108727.1| (NC_002703) minor structural protein 3 [Bacteriophage Tuc2009]
gb|AAK19875.1|AF109874_48 (AF109874) minor structural protein 3 [Bacteriophage Tuc2009]
Length = 906
Score = 47.0 bits (110), Expect = 4e-04
Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 248 RFHPVLKVRRPHYGVDYAAKHGSL-IHSASDGRVGFMGVKAG------YGKVVEI-HLNE 299
R P+ + H +D + + I +++DG+V V+AG YG I H +
Sbjct: 787 RTSPITGAQEFHNAMDLVNGNPTTPILASNDGQV----VQAGSNYYNWYGNYTVIKHADG 842
Query: 300 LRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPI------NP 353
L YAH S + G VKKGQ IG +G+TG TGPHLHF P NP
Sbjct: 843 LYTGYAHQSRI--DVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWPSSHAHFKNP 900
Query: 354 LGYIR 358
YI+
Sbjct: 901 RDYIK 905
>ref|NP_076626.1| (NC_002666) endopeptidase [bacteriophage bIL285]
ref|NP_267207.1| (NC_002662) prophage pi2 protein 44 [Lactococcus lactis subsp.
lactis]
gb|AAK05149.1|AE006338_11 (AE006338) prophage pi2 protein 44 [Lactococcus lactis subsp.
lactis]
gb|AAK08279.1|AF323668_54 (AF323668) endopeptidase [bacteriophage bIL285]
Length = 894
Score = 47.0 bits (110), Expect = 4e-04
Identities = 47/138 (34%), Positives = 62/138 (44%), Gaps = 25/138 (18%)
Query: 240 ISSPFSYG-----RFHPVLKVRRPHYGVDYAAKHGSL-IHSASDGRVGFMGVKAG----- 288
ISSP + R P+ + H +D + + I ++ DG+V V+AG
Sbjct: 762 ISSPITVTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASGDGQV----VQAGSNYYD 817
Query: 289 -YGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYK 346
YG I H + L YAH S + G VKKGQ IG +G+TG TGPHLHF
Sbjct: 818 WYGNYTVIKHADGLYTGYAHQSRI--DVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMD 875
Query: 347 NSRPI------NPLGYIR 358
P NP YI+
Sbjct: 876 QYWPSSSAHFKNPRDYIK 893
>ref|NP_112710.1| (NC_002747) ORF47 [Lactococcus lactis bacteriophage TP901-1]
gb|AAK38064.1| (AF304433) ORF47 [Lactococcus lactis bacteriophage TP901-1]
Length = 918
Score = 47.0 bits (110), Expect = 4e-04
Identities = 47/138 (34%), Positives = 62/138 (44%), Gaps = 25/138 (18%)
Query: 240 ISSPFSYG-----RFHPVLKVRRPHYGVDYAAKHGSL-IHSASDGRVGFMGVKAG----- 288
ISSP + R P+ + H +D + + I ++ DG+V V+AG
Sbjct: 786 ISSPITVTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASGDGQV----VQAGSNYYD 841
Query: 289 -YGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYK 346
YG I H + L YAH S + G VKKGQ IG +G+TG TGPHLHF
Sbjct: 842 WYGNYTVIKHADGLYTGYAHQSRI--DVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMD 899
Query: 347 NSRPI------NPLGYIR 358
P NP YI+
Sbjct: 900 QYWPSSSAHFKNPRDYIK 917
>ref|NP_281342.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||C81430 probable periplasmic protein Cj0131 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB72615.1| (AL139074) putative periplasmic protein [Campylobacter jejuni]
Length = 457
Score = 46.6 bits (109), Expect = 5e-04
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYG-KVVEIHLNELRLVYAHMSAFANGLKKG 317
H G+D A+ + I S + G+V F YG ++ H + +Y H S+ +
Sbjct: 336 HMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSS--KNVDLD 393
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGV 344
+ K IIG+ G++GL+ G HLHFGV
Sbjct: 394 EMINKQSIIGKTGTSGLALGDHLHFGV 420
>ref|NP_438864.1| (NC_000907) lipoprotein [Haemophilus influenzae Rd]
sp|P44833|LPPB_HAEIN Outer membrane antigenic lipoprotein B precursor
pir||F64087 lipoprotein D homolog - Haemophilus influenzae (strain Rd KW20)
gb|AAC22363.1| (U32753) lipoprotein [Haemophilus influenzae Rd]
Length = 405
Score = 45.8 bits (107), Expect = 9e-04
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+D + G + +A+ GR+ + G GYG ++ I H ++ YAH +
Sbjct: 307 GIDISGSRGQAVKAAAAGRIVYAGNALRGYGNLIIIKHNDDFLSAYAHNDKIL--VADQQ 364
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK GQ I ++GS+G +T LHF + + ++P+ Y+
Sbjct: 365 EVKAGQDIAKMGSSGTNT-VKLHFEIRYKGKSVDPVRYL 402
>ref|NP_532384.1| (NC_003304) lipoprotein [Agrobacterium tumefaciens str. C58 (U.
Washington)]
gb|AAL42700.1| (AE009126) lipoprotein [Agrobacterium tumefaciens str. C58 (U.
Washington)]
Length = 537
Score = 45.8 bits (107), Expect = 9e-04
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG--VKAGYGKVVEIHLNELRLVYAHMSAFANGLKKGS 318
G++ + G+ I +A +G V + G +K V+ H + VY + + +++G
Sbjct: 440 GINISVPEGTPIKAAENGVVIYAGNGLKQLGNTVLVRHDDGKVTVYGNAANL--DVQRGQ 497
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
V++GQ I G TG + P +HF V K++ P+NP G++
Sbjct: 498 KVQRGQTIATSGMTGSAKRPQVHFEVRKDATPVNPSGFL 536
>ref|NP_354688.1| (NC_003062) AGR_C_3124p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK87473.1| (AE008091) AGR_C_3124p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 562
Score = 45.8 bits (107), Expect = 9e-04
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG--VKAGYGKVVEIHLNELRLVYAHMSAFANGLKKGS 318
G++ + G+ I +A +G V + G +K V+ H + VY + + +++G
Sbjct: 465 GINISVPEGTPIKAAENGVVIYAGNGLKQLGNTVLVRHDDGKVTVYGNAANL--DVQRGQ 522
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
V++GQ I G TG + P +HF V K++ P+NP G++
Sbjct: 523 KVQRGQTIATSGMTGSAKRPQVHFEVRKDATPVNPSGFL 561
>gb|AAD33932.1|AF144608_1 (AF144608) lipoprotein NlpD [Vibrio parahaemolyticus]
Length = 203
Score = 45.4 bits (106), Expect = 0.001
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEIHLNELRL-VYAHMSAFANGLKKGS 318
G+D A + G I S + G V + G GYG ++ + N+ L YAH + +G
Sbjct: 107 GIDIAGQRGQPIVSTAAGTVVYSGNALRGYGNLIIVKHNDNYLSAYAHNDKLL--VTEGQ 164
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
VK GQ I +GS+G + LHF + + +NP Y+
Sbjct: 165 SVKSGQKIATMGSSG-AKSVKLHFEIRYQGKSVNPKRYL 202
>pir||T50918 hypothetical protein nlpD [imported] - Rubrivivax gelatinosus
dbj|BAA94071.1| (AB034704) similar to NlpD of Escherichia coli [Rubrivivax
gelatinosus]
Length = 314
Score = 45.4 bits (106), Expect = 0.001
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGV-KAGYGKVVEIHLNELRL-VYAHMSAFANGLKKGS 318
G+ A K G +++A+DGRV + G GYG ++ + N L YAH +K+
Sbjct: 216 GLSIAGKAGDPVYAAADGRVVYAGSGLRGYGNLIIVKHNATFLSAYAHNQTLL--VKEDQ 273
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINP 353
V++GQ I +G++ + LHF + + +P++P
Sbjct: 274 AVRRGQKIAEMGASD-ADRVQLHFEIRRQGKPVDP 307
>ref|NP_254238.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||H82951 hypothetical protein PA5551 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG08936.1|AE004967_7 (AE004967) hypothetical protein [Pseudomonas aeruginosa]
Length = 169
Score = 45.1 bits (105), Expect = 0.002
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRL-VYAHMSAFANGLKKG 317
H G+D A+ G+ + SAS G V + G A GKVV + + RL YAH+ + G
Sbjct: 51 HKGIDIFARSGTPVRSASYGLVLYRGEIALGGKVVLVLAPKWRLHYYAHLDSL--DAYPG 108
Query: 318 SFVKKGQIIGRVGSTGLSTG--PHLHFGV 344
V G +G VG+TG + G HLH+ +
Sbjct: 109 QPVLAGSRLGTVGTTGNARGKPAHLHYAI 137
>gb|AAL16677.1|AF358688_1 (AF358688) putative toxR-activated gene [Helicobacter hepaticus]
Length = 84
Score = 45.1 bits (105), Expect = 0.002
Identities = 23/61 (37%), Positives = 35/61 (56%), Gaps = 3/61 (4%)
Query: 314 LKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHG---KQRE 370
++KG FV+ GQ+I G+TG STGPHLH+ + I+P ++ S + K+R
Sbjct: 7 VQKGMFVRHGQLIAYSGNTGQSTGPHLHYEIRFLGNVIDPKNFMEWKMSNFNSIFEKERN 66
Query: 371 V 371
V
Sbjct: 67 V 67
>ref|NP_420803.1| (NC_002696) peptidase, M23/M37 family [Caulobacter crescentus CB15]
gb|AAK23971.1| (AE005873) peptidase, M23/M37 family [Caulobacter crescentus CB15]
Length = 609
Score = 45.1 bits (105), Expect = 0.002
Identities = 30/101 (29%), Positives = 54/101 (52%), Gaps = 10/101 (9%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKAG-YGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G++ A G+ + S++DG + + G + +G +V + H + YAH+S+ +K
Sbjct: 505 GLNIRAPQGTPVLSSADGEIAYAGNQVPTFGNLVLVKHADGWVTAYAHLSS--TNVKMRQ 562
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHF------GVYKNSRPINP 353
VK+G+ +G VG+TG P LHF V ++P++P
Sbjct: 563 QVKQGEQLGTVGATGGVNEPQLHFEMRYAPTVKDKAKPVDP 603
>ref|NP_403727.1| (NC_003143) putative membrane protein [Yersinia pestis]
emb|CAC88929.1| (AJ414141) putative membrane protein [Yersinia pestis]
Length = 450
Score = 44.7 bits (104), Expect = 0.002
Identities = 32/95 (33%), Positives = 47/95 (48%), Gaps = 5/95 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIH--LNELRLVYAHMSAFANGLKKGS 318
G+ A GS + + +DGRV GYG VV I ++ L + SA N G+
Sbjct: 353 GMVITAPEGSEVKAIADGRVLLADWLQGYGLVVVIEHGKGDMSLYGYNQSALVN---VGA 409
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINP 353
VK GQ I VG++G P L+F + + + +NP
Sbjct: 410 QVKAGQPIALVGTSGGQGEPSLYFEIRRQGQAVNP 444
>gb|AAL89761.1|AF484425_2 (AF484425) NlpD [Bartonella henselae]
Length = 392
Score = 44.7 bits (104), Expect = 0.002
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFM--GVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKG 317
G+D A GS + +A +G V + G+K G VV I H N + +Y S + +G
Sbjct: 294 GIDIAVPEGSSVKAAENGIVIYASDGLKE-LGNVVMIRHENNIITIYGCNSKLV--VTRG 350
Query: 318 SFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+++G I + G +G P ++F V +NS P++P+ Y+
Sbjct: 351 QRIRRGDEIAKSGVSGDVKTPRVYFEVRENSLPVDPIKYL 390
>gb|AAK62524.1| (AY034092) putative peptidase [Micrococcus sp. 28]
Length = 353
Score = 44.7 bits (104), Expect = 0.002
Identities = 33/127 (25%), Positives = 57/127 (43%), Gaps = 7/127 (5%)
Query: 234 PVKYTRISSPFSYGRFHPVLKVR---RPHYGVDYA-AKHGSLIHSASDGRVGFMGVKAGY 289
P+ + I+S F Y P + H G+D+A + + +A+D + +
Sbjct: 212 PLPNSYITSTFGYRGCVPGVGCEGFIADHNGLDFATSSRAGTVVAATDLTITTVDNTDAA 271
Query: 290 GKVVEIHLNE---LRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYK 346
G V H + + Y H + ++ ++ G V G + G+TG TGPHLHF +
Sbjct: 272 GAPVSGHAPDNPSVEFRYVHCALNSHRVRVGQTVAAGTPLCTEGATGYVTGPHLHFMILM 331
Query: 347 NSRPINP 353
N P++P
Sbjct: 332 NGTPVDP 338
>sp|P36685|LPPB_HAESO OUTER MEMBRANE ANTIGENIC LIPOPROTEIN B PRECURSOR
Length = 337
Score = 43.9 bits (102), Expect = 0.003
Identities = 30/86 (34%), Positives = 47/86 (53%), Gaps = 5/86 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMG-VKAGYGKVVEIHLNELRL-VYAHMSAFANGLKKGS 318
G+D + G +++A+ GRV + G GYG ++ I N+ L YAH + +K
Sbjct: 247 GIDISGSRGQAVNAAAAGRVVYAGDALRGYGNLIIIKHNDSYLSAYAHNESIL--VKDQQ 304
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGV 344
VK GQ I ++GS+G +T LHF +
Sbjct: 305 EVKAGQQIAKMGSSGTNT-IKLHFXI 329
>ref|NP_653736.1| (NC_003995) Peptidase_M37, Peptidase family M23/M37 [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 301
Score = 43.5 bits (101), Expect = 0.004
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 258 PHYGVDYAAKHGSLIH--SASDGRVGFMGVKAGYGKVVEIHLNELRLVYAHMSAFANGLK 315
P+ G+D AAK+G + +A G V + G VV + + ++ S + ++
Sbjct: 113 PNKGIDIAAKNGKEFNVTAALSGTVTKAEKDSLLGYVVTVDSGN-GVAASYQSLGSVKVE 171
Query: 316 KGSFVKKGQIIGRVGSTGLS--TGPHLHFGVYKNSRPINPLGYIRTAKSKLH-----GKQ 368
KG+ V +G+++G+ G + ++ G H+HF V K++ +NP Y+ + +++ K
Sbjct: 172 KGARVVQGEVLGKSGLSAMNKEAGSHVHFEVRKDNVAVNPERYLNKSVAEIKADAGAAKA 231
Query: 369 REVFLEKAQRSKQKLEELLKT 389
+KA QK E+ T
Sbjct: 232 TNASGKKADDKSQKEEKSTST 252
>emb|CAA71357.1| (Y10306) lysostaphin-like protein [Thermotoga maritima]
Length = 311
Score = 43.5 bits (101), Expect = 0.004
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 33/153 (21%)
Query: 229 FLLETPVKYTRISSPFSYGRFHPVLKVRRPHY--GVDYAA--KHGSLIHSASDGRVGFMG 284
F PV R+S+ F R R PH+ G+D++ K G I+++ G + +
Sbjct: 18 FSFSAPVDSPRVSATFGEYRGSGN---RGPHFHMGIDFSTGLKEGVPIYASERGWLVRIE 74
Query: 285 VKA----GYGKVVEIHLNELRLVYAHMSAFANGLK---------------------KGSF 319
+ GY V+E H N R +YAH+S F+ L+ K +
Sbjct: 75 IDEDDIYGYTVVLE-HENGYRTLYAHLSRFSKKLETVASSLKQEFGNVRIVVNFPEKEIW 133
Query: 320 VKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPIN 352
+KG+++G G+TG + PH HF + + ++
Sbjct: 134 FEKGEVVGYSGTTGEAPIPHAHFEIRDRNEEVS 166
>ref|NP_229460.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||B72224 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36727.1|AE001808_2 (AE001808) conserved hypothetical protein [Thermotoga maritima]
Length = 323
Score = 43.5 bits (101), Expect = 0.004
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 33/153 (21%)
Query: 229 FLLETPVKYTRISSPFSYGRFHPVLKVRRPHY--GVDYAA--KHGSLIHSASDGRVGFMG 284
F PV R+S+ F R R PH+ G+D++ K G I+++ G + +
Sbjct: 18 FSFSAPVDSPRVSATFGEYRGSGN---RGPHFHMGIDFSTGLKEGVPIYASERGWLVRIE 74
Query: 285 VKA----GYGKVVEIHLNELRLVYAHMSAFANGLK---------------------KGSF 319
+ GY V+E H N R +YAH+S F+ L+ K +
Sbjct: 75 IDEDDIYGYTVVLE-HENGYRTLYAHLSRFSKKLETVASSLKQEFGNVRIVVNFPEKEIW 133
Query: 320 VKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPIN 352
+KG+++G G+TG + PH HF + + ++
Sbjct: 134 FEKGEVVGYSGTTGEAPIPHAHFEIRDRNEEVS 166
>ref|NP_282422.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||E81335 probable periplasmic protein Cj1275c [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73529.1| (AL139077) putative periplasmic protein [Campylobacter jejuni]
Length = 397
Score = 43.5 bits (101), Expect = 0.004
Identities = 27/92 (29%), Positives = 47/92 (50%), Gaps = 8/92 (8%)
Query: 267 KHGSLIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQI 325
K +++ + DG++ F + +VV + H N + +YAH+ A +K G +KKG +
Sbjct: 310 KSDAVVKNVLDGKIVFAKDTSMLARVVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAV 369
Query: 326 IGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+GR+ + L F V + + INPL I
Sbjct: 370 VGRIKN-------DLTFEVTQKNFHINPLELI 394
>ref|NP_372727.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_375316.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB43295.1| (AP003136) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB58365.1| (AP003364) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 284
Score = 43.1 bits (100), Expect = 0.006
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 271 LIHSASDGRVGFMGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRV 329
+++ D +G G + I H + AH+ ++ + +G VK G +G+V
Sbjct: 176 VVNGVQDNSIGSTNESQFLGNYIVIKHAENEYSLIAHLQQYSIIVNEGQNVKYGDFLGKV 235
Query: 330 GSTGLSTGPHLHFGV 344
G++G ST PH+HF V
Sbjct: 236 GNSGNSTEPHIHFQV 250
>ref|NP_218303.1| (NC_000962) hypothetical protein Rv3786c [Mycobacterium
tuberculosis H37Rv]
sp|P72052|Y1I6_MYCTU Hypothetical protein Rv3786c precursor
pir||F70696 hypothetical protein Rv3786c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB02465.1| (Z80343) hypothetical protein Rv3786c [Mycobacterium tuberculosis
H37Rv]
Length = 407
Score = 43.1 bits (100), Expect = 0.006
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRLVYAHMSAFANGLKKGS 318
H GVD+A G+ +++ + G V + G + I EL +VY L G
Sbjct: 276 HPGVDFATDPGTPVYAVASGAVSAIDEVDGLVSLT-IARCELDVVYVFRPGDEGRLVLGD 334
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+ G +G +G+ G S +LHF V +NP+ Y+
Sbjct: 335 RIAAGAQLGTIGAQGESADGYLHFEVRTQDGHVNPVRYL 373
>ref|NP_628263.1| (NC_003888) possible secreted peptidase [Streptomyces coelicolor
A3(2)]
emb|CAB56362.1| (AL118514) possible secreted peptidase [Streptomyces coelicolor
A3(2)]
Length = 279
Score = 43.1 bits (100), Expect = 0.006
Identities = 23/69 (33%), Positives = 38/69 (54%), Gaps = 5/69 (7%)
Query: 287 AGYGKVVEIHL-----NELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLH 341
AG ++V HL + +YAH+ + +++G V+ GQ++ R G+TG ST PH+H
Sbjct: 178 AGVRRIVGNHLVLEAADGTYALYAHVQRGSFTVREGDRVRAGQVLARCGNTGNSTEPHVH 237
Query: 342 FGVYKNSRP 350
F + P
Sbjct: 238 FQLMDGPDP 246
>ref|NP_338445.1| (NC_002755) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
gb|AAK48259.1| (AE007183) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
Length = 407
Score = 43.1 bits (100), Expect = 0.006
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 259 HYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRLVYAHMSAFANGLKKGS 318
H GVD+A G+ +++ + G V + G + I EL +VY L G
Sbjct: 276 HPGVDFATDPGTPVYAVASGAVSAIDEVDGLVSLT-IARCELDVVYVFRPGDEGRLVLGD 334
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+ G +G +G+ G S +LHF V +NP+ Y+
Sbjct: 335 RIAAGAQLGTIGAQGESADGYLHFEVRTQDGHVNPVRYL 373
>ref|NP_253611.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||B83031 conserved hypothetical protein PA4924 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG08309.1|AE004905_7 (AE004905) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 231
Score = 42.7 bits (99), Expect = 0.008
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGF-MGVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGS 318
G+ A G + ++ G+V F + GYG +V I H YAH S +K+G
Sbjct: 133 GIRIAGTLGQPVQASLAGKVVFAVNNMRGYGNLVIIQHGTSYTSTYAHNSRLL--VKEGQ 190
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
V KGQ I GS+ L+F + +N RP++PL +
Sbjct: 191 MVGKGQKIAEAGSSDADR-VQLYFEIRQNGRPLDPLSLL 228
>ref|NP_290196.1| (NC_002655) putative membrane protein [Escherichia coli O157:H7
EDL933]
ref|NP_312518.1| (NC_002695) putative membrane protein [Escherichia coli O157:H7]
ref|NP_418070.1| (NC_000913) putative membrane protein [Escherichia coli K12]
pir||S47834 hypothetical 47.5K protein (secb-tdh intergenic region) -
Escherichia coli
gb|AAB18590.1| (U00039) No definition line found [Escherichia coli]
gb|AAC76637.1| (AE000439) putative membrane protein [Escherichia coli K12]
gb|AAG58760.1|AE005588_11 (AE005588) putative membrane protein [Escherichia coli O157:H7
EDL933]
dbj|BAB37914.1| (AP002566) putative membrane protein [Escherichia coli O157:H7]
Length = 427
Score = 42.7 bits (99), Expect = 0.008
Identities = 30/95 (31%), Positives = 47/95 (48%), Gaps = 5/95 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIH--LNELRLVYAHMSAFANGLKKGS 318
G+ A G+ + + +DGRV GYG VV + ++ L + SA + GS
Sbjct: 330 GMVIGASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVS---VGS 386
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINP 353
V+ GQ I VGS+G P L+F + + + +NP
Sbjct: 387 QVRAGQPIALVGSSGGQGRPSLYFEIRRQGQAVNP 421
>ref|NP_220684.1| (NC_000963) OUTER MEMBRANE ANTIGENIC LIPOPROTEIN B PRECURSOR (nlpD)
[Rickettsia prowazekii]
pir||G71685 outer membrane antigenic lipoprotein B precursor (nlpD) RP300 -
Rickettsia prowazekii
emb|CAA14761.1| (AJ235271) OUTER MEMBRANE ANTIGENIC LIPOPROTEIN B PRECURSOR (nlpD)
[Rickettsia prowazekii]
Length = 210
Score = 42.7 bits (99), Expect = 0.008
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLN--ELRLVYAHMSAFANGLKKGS 318
G+D A + S + S + G V + G +G +V + L+ +L + YA + LKKG
Sbjct: 119 GIDIAVQEYSAVKSVAAGTVIYSGYNKQFGNLVIVKLDADDLEVAYARLDDLL--LKKGD 176
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYI 357
+ K I+G V L+F + KN I+P YI
Sbjct: 177 KIAKNSIVGHVEH-------QLYFAMRKNKIAIDPSKYI 208
>sp|P37690|YIBP_ECOLI Hypothetical protein yibP
Length = 419
Score = 42.7 bits (99), Expect = 0.008
Identities = 30/95 (31%), Positives = 47/95 (48%), Gaps = 5/95 (5%)
Query: 261 GVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIH--LNELRLVYAHMSAFANGLKKGS 318
G+ A G+ + + +DGRV GYG VV + ++ L + SA + GS
Sbjct: 322 GMVIGASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVS---VGS 378
Query: 319 FVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINP 353
V+ GQ I VGS+G P L+F + + + +NP
Sbjct: 379 QVRAGQPIALVGSSGGQGRPSLYFEIRRQGQAVNP 413
>ref|NP_254050.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||F82975 hypothetical protein PA5363 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG08748.1|AE004948_4 (AE004948) hypothetical protein [Pseudomonas aeruginosa]
Length = 299
Score = 42.4 bits (98), Expect = 0.010
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 246 YGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRV-GFMGVKAGYGK------VVEIHLN 298
Y F P + Y +D A G+ I +A G V ++G G V +H +
Sbjct: 168 YSHFTP-----KGRYAMDIAMPEGTPIIAARGGTVVKIENNQSGRGNNPSGNFVRILHDD 222
Query: 299 ELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKN 347
VY H+ + + +G V+ G + R G+TG S+GPHLHF + +N
Sbjct: 223 GTMGVYLHLMRHSVLVAEGQRVQVGTPLARSGNTGNSSGPHLHFVIQRN 271
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.138 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 250,356,962
Number of Sequences: 1026957
Number of extensions: 10479917
Number of successful extensions: 25750
Number of sequences better than 1.0e-02: 235
Number of HSP's better than 0.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 25411
Number of HSP's gapped (non-prelim): 239
length of query: 403
length of database: 324,149,939
effective HSP length: 123
effective length of query: 280
effective length of database: 197,834,228
effective search space: 55393583840
effective search space used: 55393583840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 98 (42.4 bits)