BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644683|ref|NP_206853.1| hypothetical protein
[Helicobacter pylori 26695]
(330 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206853.1| (NC_000915) hypothetical protein [Helicoba... 688 0.0
gb|AAL37452.1|AF328916_2 (AF328916) putative HP0052-like pr... 595 e-169
gb|AAL37433.1|AF328909_2 (AF328909) putative HP0052-like pr... 595 e-169
gb|AAL37470.1|AF328924_3 (AF328924) putative HP0052-like pr... 560 e-159
gb|AAL37448.1|AF328915_2 (AF328915) putative HP0052-like pr... 560 e-159
gb|AAL37442.1|AF328912_1 (AF328912) JHP44-like protein [Hel... 180 2e-44
gb|AAL37446.1|AF328914_1 (AF328914) type II DNA modificatio... 177 1e-43
ref|NP_222766.1| (NC_000921) putative TYPE II DNA MODIFICAT... 176 3e-43
gb|AAL37439.1|AF328911_1 (AF328911) type II DNA modificatio... 172 4e-42
gb|AAL37436.1|AF328910_1 (AF328910) type II DNA modificatio... 172 4e-42
>ref|NP_206853.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64526 hypothetical protein HP0052 - Helicobacter pylori (strain 26695)
gb|AAD07127.1| (AE000527) H. pylori predicted coding region HP0052 [Helicobacter
pylori 26695]
Length = 330
Score = 688 bits (1776), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG
Sbjct: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
Query: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSMTPNQKRFLSGFFESRGSIDTQRN 120
TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSMTPNQKRFLSGFFESRGSIDTQRN
Sbjct: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSMTPNQKRFLSGFFESRGSIDTQRN 120
Query: 121 FLTLDYFFHSPLEFKKFHYLIDFFNIPSEALNFNFRELQPEYAQGINQRNAQFRIYLDWY 180
FLTLDYFFHSPLEFKKFHYLIDFFNIPSEALNFNFRELQPEYAQGINQRNAQFRIYLDWY
Sbjct: 121 FLTLDYFFHSPLEFKKFHYLIDFFNIPSEALNFNFRELQPEYAQGINQRNAQFRIYLDWY 180
Query: 181 LHHIGLFNPYKARIAEHVFKTTLAHDGIYYKLNYPPTTKYHGNSFTECAHFYLKNIYQQD 240
LHHIGLFNPYKARIAEHVFKTTLAHDGIYYKLNYPPTTKYHGNSFTECAHFYLKNIYQQD
Sbjct: 181 LHHIGLFNPYKARIAEHVFKTTLAHDGIYYKLNYPPTTKYHGNSFTECAHFYLKNIYQQD 240
Query: 241 LDDKSIEKLREQLGFIQKSEEFRRDSKIINLYRLSTPNVCSACCDDYDIKERSFLSLPLY 300
LDDKSIEKLREQLGFIQKSEEFRRDSKIINLYRLSTPNVCSACCDDYDIKERSFLSLPLY
Sbjct: 241 LDDKSIEKLREQLGFIQKSEEFRRDSKIINLYRLSTPNVCSACCDDYDIKERSFLSLPLY 300
Query: 301 QITQNPDSYYTEIHDFFRQNQRIRCFSKSC 330
QITQNPDSYYTEIHDFFRQNQRIRCFSKSC
Sbjct: 301 QITQNPDSYYTEIHDFFRQNQRIRCFSKSC 330
>gb|AAL37452.1|AF328916_2 (AF328916) putative HP0052-like protein [Helicobacter pylori]
Length = 408
Score = 595 bits (1535), Expect = e-169
Identities = 284/314 (90%), Positives = 302/314 (95%)
Query: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
+LLSRFQIKNGCIYGVCSYKASK V YE+SKA+VL+ALNTLSVHPIWQSNQESVTKIKG
Sbjct: 18 VLLSRFQIKNGCIYGVCSYKASKFVPDYEKSKARVLDALNTLSVHPIWQSNQESVTKIKG 77
Query: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSMTPNQKRFLSGFFESRGSIDTQRN 120
TFVFILE DLHLDEN+FYKKLLN +IDNDFFNRSHSMTPNQKRFLSGFFESRGSIDTQRN
Sbjct: 78 TFVFILEKDLHLDENAFYKKLLNLIIDNDFFNRSHSMTPNQKRFLSGFFESRGSIDTQRN 137
Query: 121 FLTLDYFFHSPLEFKKFHYLIDFFNIPSEALNFNFRELQPEYAQGINQRNAQFRIYLDWY 180
FLT DYFFHSPLEF KFHYLID FNIPSEALNFNFRELQPE+AQGINQRNAQFRIYL+WY
Sbjct: 138 FLTSDYFFHSPLEFNKFHYLIDHFNIPSEALNFNFRELQPEHAQGINQRNAQFRIYLNWY 197
Query: 181 LHHIGLFNPYKARIAEHVFKTTLAHDGIYYKLNYPPTTKYHGNSFTECAHFYLKNIYQQD 240
LHHIGLFNPYKARIAEHVFKTTL +DGIY+KL+YPPTTKYHGNSFTE AHFYLKN+YQQD
Sbjct: 198 LHHIGLFNPYKARIAEHVFKTTLIYDGIYHKLSYPPTTKYHGNSFTERAHFYLKNVYQQD 257
Query: 241 LDDKSIEKLREQLGFIQKSEEFRRDSKIINLYRLSTPNVCSACCDDYDIKERSFLSLPLY 300
LDDKSIEKLREQLG+IQKSEEF+RDSKIIN YR+STPNVCSACC DYDIKERSF+SLPLY
Sbjct: 258 LDDKSIEKLREQLGWIQKSEEFKRDSKIINFYRISTPNVCSACCGDYDIKERSFISLPLY 317
Query: 301 QITQNPDSYYTEIH 314
+ITQNP+SYYTEIH
Sbjct: 318 KITQNPNSYYTEIH 331
>gb|AAL37433.1|AF328909_2 (AF328909) putative HP0052-like protein [Helicobacter pylori]
Length = 408
Score = 595 bits (1534), Expect = e-169
Identities = 285/314 (90%), Positives = 301/314 (95%)
Query: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
+LLSRFQIKNGCIYGVCSYKASK V YE+SKAQVLNALNTLSVHPIWQSNQESVTKIKG
Sbjct: 18 VLLSRFQIKNGCIYGVCSYKASKFVPDYEKSKAQVLNALNTLSVHPIWQSNQESVTKIKG 77
Query: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSMTPNQKRFLSGFFESRGSIDTQRN 120
TFVFILE DLHLDEN+FYKKLLN +IDNDFFNRSHSMTPNQKRFLSGFFESRGSIDTQRN
Sbjct: 78 TFVFILEKDLHLDENAFYKKLLNLIIDNDFFNRSHSMTPNQKRFLSGFFESRGSIDTQRN 137
Query: 121 FLTLDYFFHSPLEFKKFHYLIDFFNIPSEALNFNFRELQPEYAQGINQRNAQFRIYLDWY 180
FLT DYFFHSPLEF KFHYLID FNIPSEALNFNFRELQPE+AQGINQRNAQFRIYL+WY
Sbjct: 138 FLTSDYFFHSPLEFNKFHYLIDHFNIPSEALNFNFRELQPEHAQGINQRNAQFRIYLNWY 197
Query: 181 LHHIGLFNPYKARIAEHVFKTTLAHDGIYYKLNYPPTTKYHGNSFTECAHFYLKNIYQQD 240
LHHIGLFNPYKARIAEHVFKTTL +DGIY+KL+YPPTTKYHGNSFTE AHFYLKN+YQQD
Sbjct: 198 LHHIGLFNPYKARIAEHVFKTTLIYDGIYHKLSYPPTTKYHGNSFTERAHFYLKNVYQQD 257
Query: 241 LDDKSIEKLREQLGFIQKSEEFRRDSKIINLYRLSTPNVCSACCDDYDIKERSFLSLPLY 300
LDDKSIEKLREQLG+IQKSEEF+RDSKIIN YR+ST NVCSACC DYDIKERSF+SLPLY
Sbjct: 258 LDDKSIEKLREQLGWIQKSEEFKRDSKIINFYRISTLNVCSACCGDYDIKERSFISLPLY 317
Query: 301 QITQNPDSYYTEIH 314
+ITQNP+SYYTEIH
Sbjct: 318 KITQNPNSYYTEIH 331
>gb|AAL37470.1|AF328924_3 (AF328924) putative HP0052-like protein [Helicobacter pylori]
Length = 411
Score = 560 bits (1444), Expect = e-159
Identities = 275/318 (86%), Positives = 291/318 (91%), Gaps = 4/318 (1%)
Query: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
+LLSRFQIKN IYGVCSYK+SK GYEESKAQVLNALNTLS HPIWQSNQESVTKIKG
Sbjct: 19 VLLSRFQIKNDRIYGVCSYKSSKFTPGYEESKAQVLNALNTLSTHPIWQSNQESVTKIKG 78
Query: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSM---TPNQKRFLSGFFESRGSIDT 117
TFVFILENDLHLDEN+FYKKLLN +IDNDFFNRS+ M T NQKRFLSGFFESRGSIDT
Sbjct: 79 TFVFILENDLHLDENAFYKKLLNLIIDNDFFNRSNLMNLMTLNQKRFLSGFFESRGSIDT 138
Query: 118 QRNFLTLDYFFHSPLEFKKFHYLIDFFNIPSEALNFNFRELQPEYAQGINQRNAQFRIYL 177
QRNFLTLDYFFHSPLEF KFHYLIDFF+IPSEALNFNFRELQ EYAQGINQRN QFRIYL
Sbjct: 139 QRNFLTLDYFFHSPLEFNKFHYLIDFFHIPSEALNFNFRELQHEYAQGINQRNVQFRIYL 198
Query: 178 DWYLHHIGLFNPYKARIAEHVFKTTLAHDGIYYKLNYPPTTKYHGNSFTECAHFYLKNIY 237
+WYL HIGLFNPYKARIAEHVFKTTL +DG+YYKL+YPPTTKYHGN F E AHFYLKN+Y
Sbjct: 199 NWYLCHIGLFNPYKARIAEHVFKTTLIYDGVYYKLSYPPTTKYHGNGFIERAHFYLKNVY 258
Query: 238 QQDLDDKSI-EKLREQLGFIQKSEEFRRDSKIINLYRLSTPNVCSACCDDYDIKERSFLS 296
QQDLD K I E LREQLG+IQKSEEF+RDSKII+ YRLSTPNVC+ACCDDYDIKERSFLS
Sbjct: 259 QQDLDKKRIKESLREQLGWIQKSEEFKRDSKIISFYRLSTPNVCNACCDDYDIKERSFLS 318
Query: 297 LPLYQITQNPDSYYTEIH 314
LPLYQITQ DSYYTE+H
Sbjct: 319 LPLYQITQRSDSYYTELH 336
>gb|AAL37448.1|AF328915_2 (AF328915) putative HP0052-like protein [Helicobacter pylori]
Length = 409
Score = 560 bits (1443), Expect = e-159
Identities = 275/317 (86%), Positives = 289/317 (90%), Gaps = 4/317 (1%)
Query: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
+LLSRFQIKNGCIYGVCSYK SK + YEESKA+VLNALNTLS H IWQSNQESVTKIKG
Sbjct: 17 VLLSRFQIKNGCIYGVCSYKLSKFIPSYEESKARVLNALNTLSKHQIWQSNQESVTKIKG 76
Query: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSH---SMTPNQKRFLSGFFESRGSIDT 117
TFVFILENDLHLDEN+FYKKLLN LIDNDFFNRSH SMTPNQKRFLSGFFESRGSIDT
Sbjct: 77 TFVFILENDLHLDENAFYKKLLNLLIDNDFFNRSHLINSMTPNQKRFLSGFFESRGSIDT 136
Query: 118 QRNFLTLDYFFHSPLEFKKFHYLIDFFNIPSEALNFNFRELQPEYAQGINQRNAQFRIYL 177
QRNFLT D+FFHSPLEF KFHYLID F IPSEALNFNFRELQPEY QGI +RNAQFRIYL
Sbjct: 137 QRNFLTSDHFFHSPLEFNKFHYLIDHFTIPSEALNFNFRELQPEYVQGI-KRNAQFRIYL 195
Query: 178 DWYLHHIGLFNPYKARIAEHVFKTTLAHDGIYYKLNYPPTTKYHGNSFTECAHFYLKNIY 237
DWYL+HI LFNPYKA+IAEHVFKTTL +D YYKL+YPP TKYHGNSF E AHFYLKN+Y
Sbjct: 196 DWYLYHISLFNPYKAKIAEHVFKTTLVNDNGYYKLSYPPRTKYHGNSFIERAHFYLKNVY 255
Query: 238 QQDLDDKSIEKLREQLGFIQKSEEFRRDSKIINLYRLSTPNVCSACCDDYDIKERSFLSL 297
QQDLDDKSIEKLREQLGFIQ SEEFRRDSKII+ YRLSTPNVC+AC DDYDIKERSF+SL
Sbjct: 256 QQDLDDKSIEKLREQLGFIQDSEEFRRDSKIISFYRLSTPNVCNACYDDYDIKERSFISL 315
Query: 298 PLYQITQNPDSYYTEIH 314
PLYQITQ DSYYTEIH
Sbjct: 316 PLYQITQRSDSYYTEIH 332
>gb|AAL37442.1|AF328912_1 (AF328912) JHP44-like protein [Helicobacter pylori]
Length = 185
Score = 180 bits (456), Expect = 2e-44
Identities = 86/100 (86%), Positives = 93/100 (93%)
Query: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
+LLSRFQIKNGCIYGVCSY+ASK GYEESKA+VLNALNTLS H IWQSNQESVTK+KG
Sbjct: 17 VLLSRFQIKNGCIYGVCSYRASKFTSGYEESKARVLNALNTLSAHQIWQSNQESVTKVKG 76
Query: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSMTPN 100
TFVFILENDLHLDEN+FYKKLLN LIDNDFFNRSH +TP+
Sbjct: 77 TFVFILENDLHLDENAFYKKLLNLLIDNDFFNRSHLVTPS 116
>gb|AAL37446.1|AF328914_1 (AF328914) type II DNA modification enzyme [Helicobacter pylori]
Length = 185
Score = 177 bits (449), Expect = 1e-43
Identities = 86/100 (86%), Positives = 93/100 (93%)
Query: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
+LLSRFQIKNGCIYGVCSYKASK GYEESKA+VLNALNTLS H IWQSNQESVTK+KG
Sbjct: 17 VLLSRFQIKNGCIYGVCSYKASKFTPGYEESKARVLNALNTLSKHQIWQSNQESVTKVKG 76
Query: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSMTPN 100
TFVFILENDL+LDEN+FYKKLLN LIDNDFFNRSH +TP+
Sbjct: 77 TFVFILENDLNLDENAFYKKLLNLLIDNDFFNRSHLVTPS 116
>ref|NP_222766.1| (NC_000921) putative TYPE II DNA MODIFICATION ENZYME
(METHYLTRANSFERASE) [Helicobacter pylori J99]
pir||B71982 probable type II DNA modification enzyme (methyltransferase) -
Helicobacter pylori (strain J99)
gb|AAD05616.1| (AE001443) putative TYPE II DNA MODIFICATION ENZYME
(METHYLTRANSFERASE) [Helicobacter pylori J99]
Length = 185
Score = 176 bits (447), Expect = 3e-43
Identities = 85/100 (85%), Positives = 91/100 (91%)
Query: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
+LLSRFQIKNGCIYGVCSYK SK GYEESKA+VLNALN LS H IWQSNQESVTK+KG
Sbjct: 17 VLLSRFQIKNGCIYGVCSYKVSKFTPGYEESKARVLNALNILSKHQIWQSNQESVTKVKG 76
Query: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSMTPN 100
TFVFILENDLHLDENSFYKKLLN +IDNDFFNRSH +TP+
Sbjct: 77 TFVFILENDLHLDENSFYKKLLNLIIDNDFFNRSHLVTPS 116
>gb|AAL37439.1|AF328911_1 (AF328911) type II DNA modification enzyme [Helicobacter pylori]
gb|AAL37445.1|AF328913_1 (AF328913) type II DNA modification enzyme [Helicobacter pylori]
Length = 185
Score = 172 bits (437), Expect = 4e-42
Identities = 84/100 (84%), Positives = 90/100 (90%)
Query: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
+LLSRFQIKNGCIYGVCSYKASK YEESKAQVLNALN LS H IWQSNQESVTK+KG
Sbjct: 17 VLLSRFQIKNGCIYGVCSYKASKFTSSYEESKAQVLNALNILSKHQIWQSNQESVTKVKG 76
Query: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSMTPN 100
TFVFILENDL+LDEN+FYKKLLN LIDNDFFNR H +TP+
Sbjct: 77 TFVFILENDLNLDENAFYKKLLNLLIDNDFFNRPHLVTPS 116
>gb|AAL37436.1|AF328910_1 (AF328910) type II DNA modification enzyme [Helicobacter pylori]
Length = 186
Score = 172 bits (437), Expect = 4e-42
Identities = 84/100 (84%), Positives = 90/100 (90%)
Query: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
+LLSRFQIKNGCIYGVCSYKASK YEESKAQVLNALN LS H IWQSNQESVTK+KG
Sbjct: 18 VLLSRFQIKNGCIYGVCSYKASKFTSSYEESKAQVLNALNILSKHQIWQSNQESVTKVKG 77
Query: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSMTPN 100
TFVFILENDL+LDEN+FYKKLLN LIDNDFFNR H +TP+
Sbjct: 78 TFVFILENDLNLDENAFYKKLLNLLIDNDFFNRPHLVTPS 117
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,815,609
Number of Sequences: 1026957
Number of extensions: 9299994
Number of successful extensions: 19482
Number of sequences better than 1.0e-02: 10
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19466
Number of HSP's gapped (non-prelim): 12
length of query: 330
length of database: 324,149,939
effective HSP length: 121
effective length of query: 209
effective length of database: 199,888,142
effective search space: 41776621678
effective search space used: 41776621678
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 97 (42.0 bits)