BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645145|ref|NP_207315.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(330 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207315.1| (NC_000915) conserved hypothetical secrete... 669 0.0
ref|NP_223185.1| (NC_000921) putative [Helicobacter pylori ... 654 0.0
ref|NP_282059.1| (NC_002163) putative periplasmic protein [... 240 2e-62
ref|NP_213129.1| (NC_000918) putative protein [Aquifex aeol... 111 1e-23
ref|NP_386789.1| (NC_003047) HYPOTHETICAL LIPOPROTEIN [Sino... 45 9e-04
ref|NP_356981.1| (NC_003063) AGR_L_2392p [Agrobacterium tum... 45 0.001
ref|NP_534127.1| (NC_003305) conserved hypothetical protein... 44 0.003
ref|NP_538956.1| (NC_003317) hypothetical protein [Brucella... 42 0.010
>ref|NP_207315.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||F64584 conserved hypothetical secreted protein HP0518 - Helicobacter
pylori (strain 26695)
gb|AAD07586.1| (AE000566) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 330
Score = 669 bits (1726), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MKKVLPALLMGFVGLNASDRLLEIMRLYQKQGLEMVGQKLDSYLADKSFWAEELQNKDTD 60
MKKVLPALLMGFVGLNASDRLLEIMRLYQKQGLEMVGQKLDSYLADKSFWAEELQNKDTD
Sbjct: 1 MKKVLPALLMGFVGLNASDRLLEIMRLYQKQGLEMVGQKLDSYLADKSFWAEELQNKDTD 60
Query: 61 FGYYQNKQFLFVANKSKPSLEFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY 120
FGYYQNKQFLFVANKSKPSLEFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY
Sbjct: 61 FGYYQNKQFLFVANKSKPSLEFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY 120
Query: 121 RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE 180
RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE
Sbjct: 121 RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE 180
Query: 181 NPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN 240
NPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN
Sbjct: 181 NPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN 240
Query: 241 PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAY 300
PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAY
Sbjct: 241 PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAY 300
Query: 301 QHNKLSYSSNSQKELYIEIENNQVSIIMEK 330
QHNKLSYSSNSQKELYIEIENNQVSIIMEK
Sbjct: 301 QHNKLSYSSNSQKELYIEIENNQVSIIMEK 330
>ref|NP_223185.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71929 hypothetical protein jhp0467 - Helicobacter pylori (strain J99)
gb|AAD06036.1| (AE001480) putative [Helicobacter pylori J99]
Length = 330
Score = 654 bits (1688), Expect = 0.0
Identities = 321/330 (97%), Positives = 326/330 (98%)
Query: 1 MKKVLPALLMGFVGLNASDRLLEIMRLYQKQGLEMVGQKLDSYLADKSFWAEELQNKDTD 60
MKK+LPALLMGFVGLNASDRLLEIMRLYQKQGLE+VGQKLDSYLADKSFWAEELQNKDTD
Sbjct: 1 MKKILPALLMGFVGLNASDRLLEIMRLYQKQGLEVVGQKLDSYLADKSFWAEELQNKDTD 60
Query: 61 FGYYQNKQFLFVANKSKPSLEFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY 120
FGYYQNKQFLFVA+KSKPSLEFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY
Sbjct: 61 FGYYQNKQFLFVADKSKPSLEFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY 120
Query: 121 RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE 180
RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE
Sbjct: 121 RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE 180
Query: 181 NPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN 240
NP+LSSYDKVLKGEKAFLITYEDKF PSTKEELSMILSSLFQWKEAWARGDFERYMRFYN
Sbjct: 181 NPILSSYDKVLKGEKAFLITYEDKFSPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN 240
Query: 241 PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAY 300
PNFTRYDGM FNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAY
Sbjct: 241 PNFTRYDGMSFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAY 300
Query: 301 QHNKLSYSSNSQKELYIEIENNQVSIIMEK 330
Q NKLSYSSNSQKELY+EIENNQ SIIMEK
Sbjct: 301 QQNKLSYSSNSQKELYVEIENNQASIIMEK 330
>ref|NP_282059.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||B81364 probable periplasmic protein Cj0906c [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73164.1| (AL139076) putative periplasmic protein [Campylobacter jejuni]
Length = 325
Score = 240 bits (612), Expect = 2e-62
Identities = 122/333 (36%), Positives = 195/333 (57%), Gaps = 12/333 (3%)
Query: 1 MKKVLPALLMGFVGLNASDRLLEIMRLYQKQGLEMVGQKLDSYLADKSFWAEELQNKDTD 60
+K++ + + + L+ASD ++++Y QGL+ VG ++ L K FW E+ +K+
Sbjct: 2 LKRLALLIALSSLMLHASD----LVKIYLNQGLDAVGVAIEKELTQKDFWLSEIGDKNIS 57
Query: 61 FGYYQNKQFLFVANKSKPSLEFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY 120
GYY + + + NK+ L Y E+ ++K K ++ GDK +EGDL TP+G Y
Sbjct: 58 LGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMGDKKIEGDLKTPVGFY 117
Query: 121 RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDR-NELNTKGCIAI 179
+ +K D YYG AF T YPNL D ++ +TG GIW+HG PL+G R +E T+GCIA+
Sbjct: 118 ELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYPLDGSRLDEFKTRGCIAL 177
Query: 180 ENPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFY 239
N L + KV++ +K F++T E + + K++++ +L+ LF WK AW D Y+ FY
Sbjct: 178 FNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADLFTWKLAWTNSDTNAYLSFY 237
Query: 240 N-PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYK 298
+ F R+D MKF F KK +F++ E K I FS IN+ PYPN +N+ ++ + F +DY
Sbjct: 238 DEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINISPYPNLENETMYRISFYEDY- 296
Query: 299 AYQHNKLSYSSNSQKELYIEIEN-NQVSIIMEK 330
Y N Y K LY++I++ ++ I+ E+
Sbjct: 297 -YTKN---YRFRGDKILYVKIDSKGKMKILAEQ 325
>ref|NP_213129.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||E70317 hypothetical protein aq_183 - Aquifex aeolicus
gb|AAC06531.1| (AE000677) putative protein [Aquifex aeolicus]
Length = 397
Score = 111 bits (277), Expect = 1e-23
Identities = 69/235 (29%), Positives = 120/235 (50%), Gaps = 13/235 (5%)
Query: 101 GSKKGDKTLEGDLATPIGVYRITQKL--ERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIW 158
G GDK EGD TP GVY T+ + E+L + YG +A NYPN YD L +TG GIW
Sbjct: 166 GMNIGDKEREGDGKTPEGVYYFTRFIPPEQLSEIYGGIAVALNYPNPYDKLLGKTGSGIW 225
Query: 159 VHGM-PLNGDRNELNTKGCIAIENPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMIL 217
+HG + D+ +T+GC+ + +L + + V K + + K P + E+ +
Sbjct: 226 LHGSNEKDRDKLPFSTRGCVVAQTDVLKT-EIVPKINLSNTLIGIYKVIPQSL-EVENVK 283
Query: 218 SSLFQWKEAWARGDFERYMRFYNPNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINV 277
+ WK AW + D R++ FY+ +F R+ G +K+YKKR + + S++++
Sbjct: 284 EFILSWKNAWEKKDLNRFISFYSKHF-RWKGGGLKEWKDYKKRTILSKKFIKVDISNLSI 342
Query: 278 IPYP--NSQNKRLFYVVFDQDYKAYQHNKLSYSSNSQKELYIEIENNQVSIIMEK 330
+ + R + + F Q Y++ +YS K +Y+ E+ ++ ++ E+
Sbjct: 343 LAFSKLGDDEPRYYVIEFYQKYRSD-----TYSDEGIKRMYVVKEDGKLKVLSEE 392
>ref|NP_386789.1| (NC_003047) HYPOTHETICAL LIPOPROTEIN [Sinorhizobium meliloti]
emb|CAC47262.1| (AL591791) HYPOTHETICAL LIPOPROTEIN [Sinorhizobium meliloti]
Length = 480
Score = 45.4 bits (106), Expect = 9e-04
Identities = 37/134 (27%), Positives = 58/134 (42%), Gaps = 13/134 (9%)
Query: 51 AEELQNKDTDFGYYQNKQFLFVANKSKPSLEFYEIEN-NMLKKINSSKALVGSKK-GDKT 108
+ ++ +K + G + L K + +LE ++ N + + S K S K G K
Sbjct: 41 SSKMVSKMRELGMQKTSPILLRIFKEEGTLEVWKANTANRFQLLKSYKICAWSGKLGPKM 100
Query: 109 LEGDLATPIGVYRI-TQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGD 167
EGD P G Y + ++ YY LA T YPN YD RTG + +HG
Sbjct: 101 KEGDRQAPEGFYPLYPNQMNPNSSYY--LAINTGYPNTYDKANGRTGTHLMIHG------ 152
Query: 168 RNELNTKGCIAIEN 181
++ GC ++ N
Sbjct: 153 --ACSSAGCYSMTN 164
>ref|NP_356981.1| (NC_003063) AGR_L_2392p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK89766.1| (AE008321) AGR_L_2392p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 452
Score = 44.7 bits (104), Expect = 0.001
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 62 GYYQNKQFLFVANKSKPSLEFYEIE-NNMLKKINSSKALVGSKK-GDKTLEGDLATPIGV 119
G +N + K + +LE ++ +N +KI + S K G K EGD P G
Sbjct: 73 GMDRNSPIMIRIFKEEGALEIWKARRDNRFEKIAGYEICAWSGKLGPKVKEGDRQAPEGF 132
Query: 120 YRITQK-LERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHG 161
Y +T L +YY LA T +PN YD R G + +HG
Sbjct: 133 YNLTPAHLNPNSKYY--LAINTGFPNRYDAANGRNGTNLMIHG 173
>ref|NP_534127.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL44443.1| (AE009292) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 379
Score = 43.9 bits (102), Expect = 0.003
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 65 QNKQFLFVANKSKPSLEFYEIE-NNMLKKINSSKALVGSKK-GDKTLEGDLATPIGVYRI 122
+N + K + +LE ++ +N +KI + S K G K EGD P G Y +
Sbjct: 3 RNSPIMIRIFKEEGALEIWKARRDNRFEKIAGYEICAWSGKLGPKVKEGDRQAPEGFYNL 62
Query: 123 TQK-LERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHG 161
T L +YY LA T +PN YD R G + +HG
Sbjct: 63 TPAHLNPNSKYY--LAINTGFPNRYDAANGRNGTNLMIHG 100
>ref|NP_538956.1| (NC_003317) hypothetical protein [Brucella melitensis]
gb|AAL51220.1| (AE009447) hypothetical protein [Brucella melitensis]
Length = 403
Score = 42.0 bits (97), Expect = 0.010
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 103 KKGDKTLEGDLATPIGVYRITQ-KLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHG 161
K G K +EGD P G Y + ++ YY LAF +PN YD RTG + VHG
Sbjct: 91 KLGPKYIEGDRQAPEGFYTVRPAQMNPHSNYY--LAFNIGFPNAYDRANGRTGQHLMVHG 148
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,001,152
Number of Sequences: 1026957
Number of extensions: 9421775
Number of successful extensions: 22003
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21991
Number of HSP's gapped (non-prelim): 8
length of query: 330
length of database: 324,149,939
effective HSP length: 121
effective length of query: 209
effective length of database: 199,888,142
effective search space: 41776621678
effective search space used: 41776621678
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 97 (42.0 bits)