BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645146|ref|NP_207316.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(276 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207316.1| (NC_000915) conserved hypothetical protein... 547 e-155
ref|NP_223186.1| (NC_000921) putative [Helicobacter pylori ... 494 e-139
gb|AAG09835.1| (AF289392) HP0519-like protein [Helicobacter... 130 2e-29
gb|AAG09839.1|AF289394_2 (AF289394) HP0519-like protein [He... 127 1e-28
gb|AAG09831.1|AF289390_2 (AF289390) HP0519-like protein [He... 127 1e-28
gb|AAG09843.1|AF289396_2 (AF289396) HP0519-like protein [He... 122 4e-27
gb|AAG09841.1|AF289395_2 (AF289395) HP0519-like protein [He... 122 4e-27
gb|AAB47276.1| (U86608) 29 kDa protein [Helicobacter pylori] 62 5e-09
ref|NP_223762.1| (NC_000921) putative [Helicobacter pylori ... 59 4e-08
ref|NP_207908.1| (NC_000915) conserved hypothetical secrete... 58 1e-07
gb|AAB63298.1| (AF008565) Orf2 [Helicobacter pylori] 54 1e-06
gb|AAC24210.1| (AF053708) cysteine-rich protein; HcpA [Heli... 54 1e-06
ref|NP_207134.1| (NC_000915) hypothetical protein [Helicoba... 54 2e-06
ref|NP_207009.1| (NC_000915) conserved hypothetical secrete... 53 4e-06
ref|NP_222918.1| (NC_000921) putative [Helicobacter pylori ... 52 7e-06
gb|EAA06387.1| (AAAB01008846) agCP13101 [Anopheles gambiae ... 50 2e-05
ref|NP_206959.1| (NC_000915) conserved hypothetical secrete... 50 3e-05
gb|AAD05210.1| (AF063095) SELlL [Mus musculus] >gi|20073079... 49 6e-05
ref|XP_127076.1| (XM_127076) similar to Sel-1 homolog precu... 49 6e-05
ref|NP_005056.3| (NM_005065) sel-1 suppressor of lin-12-lik... 49 6e-05
gb|AAF29413.1|AF052059_1 (AF052059) SEL1L [Homo sapiens] >g... 49 6e-05
dbj|BAB12403.1| (AB048195) SEL1L [Mesocricetus auratus] 49 8e-05
ref|NP_586349.1| (NC_003237) similarity to SKT5 PROTEIN [En... 47 3e-04
ref|NP_222869.1| (NC_000921) putative [Helicobacter pylori ... 46 5e-04
gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [H... 45 7e-04
ref|NP_222941.1| (NC_000921) putative [Helicobacter pylori ... 44 0.001
ref|NP_207033.1| (NC_000915) conserved hypothetical secrete... 44 0.001
ref|NP_246550.1| (NC_002663) unknown [Pasteurella multocida... 44 0.002
ref|NP_661851.1| (NC_002932) conserved hypothetical protein... 42 0.006
>ref|NP_207316.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||G64584 conserved hypothetical protein HP0519 - Helicobacter pylori
(strain 26695)
gb|AAD07587.1| (AE000566) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 276
Score = 547 bits (1409), Expect = e-155
Identities = 276/276 (100%), Positives = 276/276 (100%)
Query: 1 MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDDWDEIVRNHKTYYFENGLDHF 60
MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDDWDEIVRNHKTYYFENGLDHF
Sbjct: 1 MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDDWDEIVRNHKTYYFENGLDHF 60
Query: 61 NQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLL 120
NQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLL
Sbjct: 61 NQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLL 120
Query: 121 GGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNFRLPNLAEFTSMLIGS 180
GGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNFRLPNLAEFTSMLIGS
Sbjct: 121 GGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNFRLPNLAEFTSMLIGS 180
Query: 181 RFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLKQQMGEILYRI 240
RFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLKQQMGEILYRI
Sbjct: 181 RFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLKQQMGEILYRI 240
Query: 241 GIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 276
GIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL
Sbjct: 241 GIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 276
>ref|NP_223186.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71927 hypothetical protein jhp0468 - Helicobacter pylori (strain J99)
gb|AAD06051.1| (AE001481) putative [Helicobacter pylori J99]
Length = 283
Score = 494 bits (1273), Expect = e-139
Identities = 255/284 (89%), Positives = 262/284 (91%), Gaps = 9/284 (3%)
Query: 1 MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDDWDE--------IVRNHKTYY 52
MF+DFYRTTLSFL+ LLLLL LLLPFSLCIADEYISISDDWDE RNHKTYY
Sbjct: 1 MFEDFYRTTLSFLRSLLLLLGLLLPFSLCIADEYISISDDWDERARNQWDETARNHKTYY 60
Query: 53 FENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAI 112
FENGLDHFNQGQY+QAFKDF+LAQEYSIGLG+VYLAKMYLEGKGVKVDYKKAQFYA+NAI
Sbjct: 61 FENGLDHFNQGQYKQAFKDFKLAQEYSIGLGNVYLAKMYLEGKGVKVDYKKAQFYAQNAI 120
Query: 113 KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNFRLPNLAE 172
KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKS NFAN F NLAE
Sbjct: 121 KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSANFANKFG-SNLAE 179
Query: 173 FTSMLIGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLKQQ 232
FTSMLIGSRFIDLSGLSANPIKFG KFGILVKK+ QIKD TL WEDIAEISSNI LLKQQ
Sbjct: 180 FTSMLIGSRFIDLSGLSANPIKFGNKFGILVKKALQIKDNTLSWEDIAEISSNIILLKQQ 239
Query: 233 MGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 276
MGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL
Sbjct: 240 MGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 283
>gb|AAG09835.1| (AF289392) HP0519-like protein [Helicobacter pylori]
gb|AAG09837.1|AF289393_2 (AF289393) HP0519-like protein [Helicobacter pylori]
gb|AAG09845.1|AF289397_2 (AF289397) HP0519-like protein [Helicobacter pylori]
gb|AAG09847.1|AF289398_2 (AF289398) HP0519-like protein [Helicobacter pylori]
Length = 73
Score = 130 bits (326), Expect = 2e-29
Identities = 64/73 (87%), Positives = 64/73 (87%), Gaps = 8/73 (10%)
Query: 1 MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDD--------WDEIVRNHKTYY 52
MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDD WDEI RNHKTYY
Sbjct: 1 MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDDWDERARNQWDEIARNHKTYY 60
Query: 53 FENGLDHFNQGQY 65
FENGLDHFNQGQY
Sbjct: 61 FENGLDHFNQGQY 73
>gb|AAG09839.1|AF289394_2 (AF289394) HP0519-like protein [Helicobacter pylori]
Length = 73
Score = 127 bits (320), Expect = 1e-28
Identities = 63/73 (86%), Positives = 63/73 (86%), Gaps = 8/73 (10%)
Query: 1 MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDD--------WDEIVRNHKTYY 52
MFKDFYRTTLS LKPLLLLLVLLLPFSLCIADEYISISDD WDEI RNHKTYY
Sbjct: 1 MFKDFYRTTLSLLKPLLLLLVLLLPFSLCIADEYISISDDWDERARNQWDEIARNHKTYY 60
Query: 53 FENGLDHFNQGQY 65
FENGLDHFNQGQY
Sbjct: 61 FENGLDHFNQGQY 73
>gb|AAG09831.1|AF289390_2 (AF289390) HP0519-like protein [Helicobacter pylori]
gb|AAG09833.1|AF289391_2 (AF289391) HP0519-like protein [Helicobacter pylori]
Length = 73
Score = 127 bits (319), Expect = 1e-28
Identities = 63/73 (86%), Positives = 63/73 (86%), Gaps = 8/73 (10%)
Query: 1 MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDD--------WDEIVRNHKTYY 52
MFKDFYRTTLSFLKPLLLLL LLLPFSLCIADEYISISDD WDEI RNHKTYY
Sbjct: 1 MFKDFYRTTLSFLKPLLLLLGLLLPFSLCIADEYISISDDWDERARNQWDEIARNHKTYY 60
Query: 53 FENGLDHFNQGQY 65
FENGLDHFNQGQY
Sbjct: 61 FENGLDHFNQGQY 73
>gb|AAG09843.1|AF289396_2 (AF289396) HP0519-like protein [Helicobacter pylori]
Length = 73
Score = 122 bits (306), Expect = 4e-27
Identities = 61/73 (83%), Positives = 61/73 (83%), Gaps = 8/73 (10%)
Query: 1 MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDD--------WDEIVRNHKTYY 52
MFKDFYRTT S LK LLLLLVLLLPFSLCIADEYISISDD WDEI RNHKTYY
Sbjct: 1 MFKDFYRTTFSSLKSLLLLLVLLLPFSLCIADEYISISDDWDERARNQWDEIARNHKTYY 60
Query: 53 FENGLDHFNQGQY 65
FENGLDHFNQGQY
Sbjct: 61 FENGLDHFNQGQY 73
>gb|AAG09841.1|AF289395_2 (AF289395) HP0519-like protein [Helicobacter pylori]
Length = 73
Score = 122 bits (306), Expect = 4e-27
Identities = 61/73 (83%), Positives = 61/73 (83%), Gaps = 8/73 (10%)
Query: 1 MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDD--------WDEIVRNHKTYY 52
MFKDFYRTT S LK LLLLLVLLLPFSLCIADEYISISDD WDEI RNHKTYY
Sbjct: 1 MFKDFYRTTFSSLKSLLLLLVLLLPFSLCIADEYISISDDWDERARDQWDEIARNHKTYY 60
Query: 53 FENGLDHFNQGQY 65
FENGLDHFNQGQY
Sbjct: 61 FENGLDHFNQGQY 73
>gb|AAB47276.1| (U86608) 29 kDa protein [Helicobacter pylori]
Length = 256
Score = 62.4 bits (150), Expect = 5e-09
Identities = 58/242 (23%), Positives = 107/242 (43%), Gaps = 44/242 (18%)
Query: 49 KTYYFENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYA 108
K Y G + +N +Y++A ++ A + L V L MY G+GV DYKKA Y
Sbjct: 30 KRNYIYKGEEAYNNKEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDYKKAAEYF 89
Query: 109 ENAI-----KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFAN 163
+ A+ +GY + LG M EG G+ KD K+A++ +R +AN
Sbjct: 90 QKAVDNDIPRGYNN--------LGVMYKEGRGVPKDEKKAVEYFRIAT------EKGYAN 135
Query: 164 NFRLPNLAEFTSMLIGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEIS 223
+ + +G +++ G+ +N +K + F + K ++ LL + +
Sbjct: 136 AY----------INLGIMYMEGRGVPSNYVKATECFRKAMHKG-NVEAYILLGDIYYSGN 184
Query: 224 SNITLLKQQMGEILY--------------RIGIAYKEGLGTRKKKDRAKKFLQKSAEFGY 269
+ + + I+Y + +Y+ GLG K K +A++++QK+ +F
Sbjct: 185 DQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAESYRYGLGVEKDKKKAEEYMQKACDFDI 244
Query: 270 EK 271
+K
Sbjct: 245 DK 246
>ref|NP_223762.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71856 hypothetical protein jhp1045 - Helicobacter pylori (strain J99)
gb|AAD06623.1| (AE001532) putative [Helicobacter pylori J99]
Length = 256
Score = 59.3 bits (142), Expect = 4e-08
Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 46/243 (18%)
Query: 49 KTYYFENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYA 108
K Y G + +N +Y++A ++ A + L + L MY G+GV DYKKA Y
Sbjct: 30 KGNYIYKGEEAYNNKEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYF 89
Query: 109 ENAI-----KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVV-RMFSNKSTNFA 162
+ A+ +GY + LG M EG G+ KD K+A++ +R + ++N N
Sbjct: 90 QKAVDNDIPRGYNN--------LGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYIN-- 139
Query: 163 NNFRLPNLAEFTSMLIGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEI 222
+G +++ G+ +N K + F + K ++ LL +
Sbjct: 140 ---------------LGIMYMEGRGVPSNYAKATECFRKAMHKG-NVEAYILLGDIYYSG 183
Query: 223 SSNITLLKQQMGEILY--------------RIGIAYKEGLGTRKKKDRAKKFLQKSAEFG 268
+ + + + ++Y + +Y+ GLG K K +A++++QK+ +F
Sbjct: 184 NDQLGIEPDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKKKAEEYMQKACDFD 243
Query: 269 YEK 271
+K
Sbjct: 244 IDK 246
>ref|NP_207908.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||E64659 conserved hypothetical secreted protein HP1117 - Helicobacter
pylori (strain 26695)
gb|AAD08161.1| (AE000618) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 256
Score = 57.8 bits (138), Expect = 1e-07
Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 46/243 (18%)
Query: 49 KTYYFENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYA 108
K Y G + +N +Y++A ++ A + L V L MY G+GV D KKA Y
Sbjct: 30 KRNYIYKGEEAYNNKEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDEKKAAEYF 89
Query: 109 ENAI-----KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVV-RMFSNKSTNFA 162
+ A+ +GY + LG M EG G+ KD K+A++ +R + ++N N
Sbjct: 90 QKAVDNDIPRGYNN--------LGVMYKEGRGVPKDEKKAVEYFRIATEKGYTNAYIN-- 139
Query: 163 NNFRLPNLAEFTSMLIGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEI 222
+G +++ G+ +N +K + F + K ++ LL +
Sbjct: 140 ---------------LGIMYMEGRGVPSNYVKATECFRKAMHKG-NVEAYILLGDIYYSG 183
Query: 223 SSNITLLKQQMGEILY--------------RIGIAYKEGLGTRKKKDRAKKFLQKSAEFG 268
+ + + + I+Y + +Y+ GLG K K +A++++QK+ +F
Sbjct: 184 NDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAESYQYGLGVEKDKKKAEEYMQKACDFD 243
Query: 269 YEK 271
+K
Sbjct: 244 IDK 246
>gb|AAB63298.1| (AF008565) Orf2 [Helicobacter pylori]
Length = 250
Score = 54.3 bits (129), Expect = 1e-06
Identities = 63/234 (26%), Positives = 93/234 (38%), Gaps = 39/234 (16%)
Query: 56 GLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENA--I 112
G++ + + QA F A E G G V+L Y EGKGV D KKA QFY ++
Sbjct: 36 GIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELN 95
Query: 113 KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNFRLPNLAE 172
GYG L LG + G G+ KD K+A + Y + N AE
Sbjct: 96 DGYGCNL------LGNLYYNGQGVSKDAKKASQYYSKACDL---------------NHAE 134
Query: 173 FTSMLIGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKT------LLWEDIAEISSNI 226
M++GS L K +K L +K+ +KD ++ I
Sbjct: 135 -GCMVLGS----LHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAI 189
Query: 227 TLLKQQM----GEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 276
Q G Y +G+ GT K + +A + +K + G ++A +AL
Sbjct: 190 VRYSQACELNDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSGVKEACDAL 243
>gb|AAC24210.1| (AF053708) cysteine-rich protein; HcpA [Helicobacter pylori]
Length = 250
Score = 54.3 bits (129), Expect = 1e-06
Identities = 63/234 (26%), Positives = 93/234 (38%), Gaps = 39/234 (16%)
Query: 56 GLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENA--I 112
G++ + + QA F A E G G V+L Y EGKGV D KKA QFY ++
Sbjct: 36 GIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELN 95
Query: 113 KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNFRLPNLAE 172
GYG L LG + G G+ KD K+A + Y + N AE
Sbjct: 96 DGYGCNL------LGNLYYNGQGVSKDAKKASQYYSKACDL---------------NHAE 134
Query: 173 FTSMLIGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKT------LLWEDIAEISSNI 226
M++GS L K +K L +K+ +KD ++ I
Sbjct: 135 -GCMVLGS----LHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAI 189
Query: 227 TLLKQQM----GEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 276
Q G Y +G+ GT K + +A + +K + G ++A +AL
Sbjct: 190 VRYSQACELNDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSGVKEACDAL 243
>ref|NP_207134.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64561 invalid gene - Helicobacter pylori (strain 26695)
gb|AAD07408.1| (AE000551) H. pylori predicted coding region HP0336 [Helicobacter
pylori 26695]
Length = 138
Score = 53.5 bits (127), Expect = 2e-06
Identities = 37/101 (36%), Positives = 51/101 (49%), Gaps = 5/101 (4%)
Query: 66 QQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENAIKGYGSGLLGGAL 124
Q+ F+ A E + G G +L Y GK VK D +KA Q+Y+ K G G L
Sbjct: 42 QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS----KACGLNDQDGCL 97
Query: 125 ILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNF 165
ILG Q G G+ K+ KQA+KT+ R+ S + NN+
Sbjct: 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNY 138
>ref|NP_207009.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
sp|O25001|HCPA_HELPY HcpA protein precursor (Cysteine-rich 28 kDa protein)
pir||C64546 conserved hypothetical secreted protein HP0211 - Helicobacter
pylori (strain 26695)
gb|AAD07279.1| (AE000541) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 250
Score = 52.8 bits (125), Expect = 4e-06
Identities = 40/125 (32%), Positives = 52/125 (41%), Gaps = 33/125 (26%)
Query: 56 GLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENA--I 112
G++ + + QA F A E G G V+L Y EGKGV D KKA QFY +
Sbjct: 36 GIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELN 95
Query: 113 KGYGSGLLG------------------------------GALILGRMQAEGLGMKKDLKQ 142
GYG LLG G ++LG + G+G KDL++
Sbjct: 96 DGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRK 155
Query: 143 ALKTY 147
AL Y
Sbjct: 156 ALDLY 160
>ref|NP_222918.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMM1|HCPA_HELPJ HcpA protein precursor (Cysteine-rich 28 kDa protein)
pir||B71961 hypothetical protein jhp0197 - Helicobacter pylori (strain J99)
gb|AAD05781.1| (AE001458) putative [Helicobacter pylori J99]
Length = 250
Score = 52.0 bits (123), Expect = 7e-06
Identities = 34/93 (36%), Positives = 45/93 (47%), Gaps = 5/93 (5%)
Query: 56 GLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENAIKG 114
G++ + + QA F A E G G V+L Y EGKGV D KKA QFY +
Sbjct: 36 GIESVKKQDFAQAKAHFEKACELKEGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELN 95
Query: 115 YGSGLLGGALILGRMQAEGLGMKKDLKQALKTY 147
G G +LG + G G+ KD K+A + Y
Sbjct: 96 DGY----GCRLLGNLYYNGQGVSKDAKKASQYY 124
>gb|EAA06387.1| (AAAB01008846) agCP13101 [Anopheles gambiae str. PEST]
Length = 849
Score = 50.4 bits (119), Expect = 2e-05
Identities = 31/83 (37%), Positives = 49/83 (58%), Gaps = 5/83 (6%)
Query: 66 QQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENAIKGYGSGLLGGAL 124
+ AFK F+ A + +G L MYL GKGV+ D KA +++A+ A +G+ + G L
Sbjct: 436 ETAFKYFKKAADLGNPVGQSGLGIMYLHGKGVRKDTGKALKYFAKAADQGW----VDGQL 491
Query: 125 ILGRMQAEGLGMKKDLKQALKTY 147
LG M G+G+++D K A+K +
Sbjct: 492 QLGNMYYSGIGVQRDFKLAIKYF 514
>ref|NP_206959.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||H64539 conserved hypothetical secreted protein HP0160 - Helicobacter
pylori (strain 26695)
gb|AAD07230.1| (AE000537) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 306
Score = 50.1 bits (118), Expect = 3e-05
Identities = 57/255 (22%), Positives = 98/255 (38%), Gaps = 33/255 (12%)
Query: 52 YFENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENA 111
YF+ F +G Y +A ++ + +G+G L MY +G GV + KA FY
Sbjct: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYR-- 88
Query: 112 IKGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKS------------- 158
+G LG M +G G++K+L +A+ YR + S
Sbjct: 89 -RGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTG 147
Query: 159 --TNFANNFRLPNLAEFTSMLIGSRFIDLSGLSANPI-KFGKKFGILVKKSTQIKDKT-- 213
N+A L A + I F+ +A + K KK K+ +KD
Sbjct: 148 VKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASC 207
Query: 214 ----LLWEDIAEISSN----ITLLKQ----QMGEILYRIGIAYKEGLGTRKKKDRAKKFL 261
++E ++ N + L K+ + G + + + Y G G K D+A +
Sbjct: 208 VSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYY 267
Query: 262 QKSAEFGYEKAMEAL 276
+K G+ + + L
Sbjct: 268 KKGCTLGFSGSCKVL 282
>gb|AAD05210.1| (AF063095) SELlL [Mus musculus]
gb|AAH26816.1| (BC026816) Sel1 (suppressor of lin-12) 1 homolog (C. elegans) [Mus
musculus]
Length = 740
Score = 48.9 bits (115), Expect = 6e-05
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 66 QQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLGGALI 125
+ A F+ A + +G L YL G+GV+V+Y A Y + A + G + G L
Sbjct: 378 ETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAE---QGWVDGQLQ 434
Query: 126 LGRMQAEGLGMKKDLKQALKTY 147
LG M G+G+K+D KQALK +
Sbjct: 435 LGSMYYNGIGVKRDYKQALKYF 456
Score = 45.8 bits (107), Expect = 5e-04
Identities = 52/237 (21%), Positives = 95/237 (39%), Gaps = 36/237 (15%)
Query: 62 QGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLG 121
Q Y A K F+ A E G + L MY G GVK DYK+A Y A +G G +
Sbjct: 410 QVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQG---GHIL 466
Query: 122 GALILGRMQAEGLGMKKDLKQALKTYRHVVR--MFSNKSTNFANNFRLP--NLAEFTSML 177
L +M A G G+ + A++ +++V +S + N+++ N A +L
Sbjct: 467 AFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDEDYNAAVVQYLL 526
Query: 178 IGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLK------- 230
+ + +++ +A I ++ +V ++ L W A + +K
Sbjct: 527 LAEQGYEVAQSNAAFI-LDQREATIVGENETYPRALLHWNRAASQGYTVARIKLGDYHFY 585
Query: 231 ---------------------QQMGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAE 266
Q + ++ +G +++GLG ++ AK+F +AE
Sbjct: 586 GFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLAKRFYDMAAE 642
>ref|XP_127076.1| (XM_127076) similar to Sel-1 homolog precursor (Suppressor of
lin-12-like protein) (Sel-1L) [Mus musculus]
sp|Q9Z2G6|SE1L_MOUSE Sel-1 homolog precursor (Suppressor of lin-12-like protein)
(Sel-1L)
dbj|BAB23750.1| (AK005023) Sel1 (suppressor of lin-12) 1 homolog (C. elegans)~data
source:MGD, source key:MGI:1329016,
evidence:ISS~putative [Mus musculus]
Length = 790
Score = 48.9 bits (115), Expect = 6e-05
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 66 QQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLGGALI 125
+ A F+ A + +G L YL G+GV+V+Y A Y + A + G + G L
Sbjct: 428 ETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAE---QGWVDGQLQ 484
Query: 126 LGRMQAEGLGMKKDLKQALKTY 147
LG M G+G+K+D KQALK +
Sbjct: 485 LGSMYYNGIGVKRDYKQALKYF 506
Score = 45.8 bits (107), Expect = 5e-04
Identities = 52/237 (21%), Positives = 95/237 (39%), Gaps = 36/237 (15%)
Query: 62 QGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLG 121
Q Y A K F+ A E G + L MY G GVK DYK+A Y A +G G +
Sbjct: 460 QVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQG---GHIL 516
Query: 122 GALILGRMQAEGLGMKKDLKQALKTYRHVVR--MFSNKSTNFANNFRLP--NLAEFTSML 177
L +M A G G+ + A++ +++V +S + N+++ N A +L
Sbjct: 517 AFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDEDYNAAVVQYLL 576
Query: 178 IGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLK------- 230
+ + +++ +A I ++ +V ++ L W A + +K
Sbjct: 577 LAEQGYEVAQSNAAFI-LDQREATIVGENETYPRALLHWNRAASQGYTVARIKLGDYHFY 635
Query: 231 ---------------------QQMGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAE 266
Q + ++ +G +++GLG ++ AK+F +AE
Sbjct: 636 GFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLAKRFYDMAAE 692
>ref|NP_005056.3| (NM_005065) sel-1 suppressor of lin-12-like (C. elegans);
Suppressor of lin 12 (sel-1), C. elegans, homolog of;
sel-1 (suppressor of lin-12, C.elegans)-like [Homo
sapiens]
ref|XP_007325.4| (XM_007325) sel-1 suppressor of lin-12-like (C. elegans) [Homo
sapiens]
sp|Q9UBV2|SE1L_HUMAN Sel-1 homolog precursor (Suppressor of lin-12-like protein)
(Sel-1L)
dbj|BAA87904.1| (AB020335) Pancreas-specific gene [Homo sapiens]
dbj|BAA89204.1| (AB024763) TSA305 [Homo sapiens]
Length = 794
Score = 48.9 bits (115), Expect = 6e-05
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 66 QQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLGGALI 125
+ A F+ A + +G L YL G+GV+V+Y A Y + A + G + G L
Sbjct: 432 ETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAE---QGWVDGQLQ 488
Query: 126 LGRMQAEGLGMKKDLKQALKTY 147
LG M G+G+K+D KQALK +
Sbjct: 489 LGSMYYNGIGVKRDYKQALKYF 510
Score = 46.6 bits (109), Expect = 3e-04
Identities = 53/237 (22%), Positives = 96/237 (40%), Gaps = 36/237 (15%)
Query: 62 QGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLG 121
Q Y A K F+ A E G + L MY G GVK DYK+A Y A +G G +
Sbjct: 464 QVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQG---GHIL 520
Query: 122 GALILGRMQAEGLGMKKDLKQALKTYRHVVR--MFSNKSTNFANNFRLP--NLAEFTSML 177
L +M A G G+ + A++ +++V +S + N+++ N A +L
Sbjct: 521 AFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAAVIQYLL 580
Query: 178 IGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLK------- 230
+ + +++ +A I ++ I+ + T + L W A + +K
Sbjct: 581 LAEQGYEVAQSNAAFILDQREASIVGENETYPR-ALLHWNRAASQGYTVARIKLGDYHFY 639
Query: 231 ---------------------QQMGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAE 266
Q + ++ +G +++GLG ++ AK+F +AE
Sbjct: 640 GFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLAKRFYDMAAE 696
>gb|AAF29413.1|AF052059_1 (AF052059) SEL1L [Homo sapiens]
gb|AAL40905.1| (AF198647) sel-1 [Homo sapiens]
Length = 794
Score = 48.9 bits (115), Expect = 6e-05
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 66 QQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLGGALI 125
+ A F+ A + +G L YL G+GV+V+Y A Y + A + G + G L
Sbjct: 432 ETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAE---QGWVDGQLQ 488
Query: 126 LGRMQAEGLGMKKDLKQALKTY 147
LG M G+G+K+D KQALK +
Sbjct: 489 LGSMYYNGIGVKRDYKQALKYF 510
Score = 46.6 bits (109), Expect = 3e-04
Identities = 53/237 (22%), Positives = 96/237 (40%), Gaps = 36/237 (15%)
Query: 62 QGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLG 121
Q Y A K F+ A E G + L MY G GVK DYK+A Y A +G G +
Sbjct: 464 QVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQG---GHIL 520
Query: 122 GALILGRMQAEGLGMKKDLKQALKTYRHVVR--MFSNKSTNFANNFRLP--NLAEFTSML 177
L +M A G G+ + A++ +++V +S + N+++ N A +L
Sbjct: 521 AFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAAVIQYLL 580
Query: 178 IGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLK------- 230
+ + +++ +A I ++ I+ + T + L W A + +K
Sbjct: 581 LAEQGYEVAQSNAAFILDQREASIVGENETYPR-ALLHWNRAASQGYTVARIKLGDYHFY 639
Query: 231 ---------------------QQMGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAE 266
Q + ++ +G +++GLG ++ AK+F +AE
Sbjct: 640 GFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLAKRFYDMAAE 696
>dbj|BAB12403.1| (AB048195) SEL1L [Mesocricetus auratus]
Length = 794
Score = 48.5 bits (114), Expect = 8e-05
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 66 QQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLGGALI 125
+ A F+ A + +G L YL G+G++V+Y A Y + A + G + G L
Sbjct: 432 ETALHYFKKAADMGNPVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAE---QGWVDGQLQ 488
Query: 126 LGRMQAEGLGMKKDLKQALKTY 147
LG M G+G+K+D KQALK +
Sbjct: 489 LGSMYYNGIGVKRDYKQALKYF 510
Score = 45.4 bits (106), Expect = 7e-04
Identities = 52/237 (21%), Positives = 95/237 (39%), Gaps = 36/237 (15%)
Query: 62 QGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLG 121
Q Y A K F+ A E G + L MY G GVK DYK+A Y A +G G +
Sbjct: 464 QVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQG---GHIL 520
Query: 122 GALILGRMQAEGLGMKKDLKQALKTYRHVVR--MFSNKSTNFANNFRLP--NLAEFTSML 177
L +M A G G+ + A++ +++V +S + N+++ N A +L
Sbjct: 521 AFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAAVVQYLL 580
Query: 178 IGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLK------- 230
+ + +++ +A I ++ +V ++ L W A + +K
Sbjct: 581 LAEQGYEVAQSNAAFI-LDQREATIVGENETYPRALLHWNRAASQGYTVARIKLGDYHFY 639
Query: 231 ---------------------QQMGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAE 266
Q + ++ +G +++GLG ++ AK+F +AE
Sbjct: 640 GFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLAKRFYDMAAE 696
>ref|NP_586349.1| (NC_003237) similarity to SKT5 PROTEIN [Encephalitozoon cuniculi]
emb|CAD25953.1| (AL590450) similarity to SKT5 PROTEIN [Encephalitozoon cuniculi]
Length = 590
Score = 46.6 bits (109), Expect = 3e-04
Identities = 63/229 (27%), Positives = 99/229 (42%), Gaps = 33/229 (14%)
Query: 65 YQQAF---KDFRLAQEY-SIGLGS------VYLAKMYLEGKGVKVDYKKAQFYAENAIKG 114
YQ + KD RLA Y S G+ + + LA Y G GV++ +K+ + A +
Sbjct: 359 YQHGYGVPKDERLAVRYFSEGVRAGFDEAIISLALCYRSGIGVRISPEKSFALMKRAAEM 418
Query: 115 YGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFS-----NKSTNFANNFRLPN 169
S LG EG G K+L++A+K Y + + N ST + N +P
Sbjct: 419 NNSSAQN---TLGYYYEEGYGTPKNLRKAVKWYETSAKRNNSWALFNLSTLYLNGNHVPA 475
Query: 170 LAEF-TSMLIGSRFIDLSGLSA-NPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNIT 227
E +LI SR DL A N + + + GI+V K D L +E + N
Sbjct: 476 DKELGIRLLIRSR--DLGNPRAMNTLGYCFEKGIVVGK-----DPRLAFEHYTQALMN-- 526
Query: 228 LLKQQMGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 276
+ Y +G Y+ G+GT D+A + K++ G E +++ L
Sbjct: 527 ----GYSKAGYSLGRCYESGIGTEVDLDKALYYFYKASSAGEEASLQRL 571
Score = 45.1 bits (105), Expect = 9e-04
Identities = 44/212 (20%), Positives = 88/212 (40%), Gaps = 13/212 (6%)
Query: 67 QAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENAIKGYGSGLLGGALI 125
+AF+ +RL+ + L Y EGKGV D +KA + Y ++A++GY SG
Sbjct: 227 KAFEMYRLSAKMENSYAQNALGNCYEEGKGVDRDLQKAFELYKKSALQGYPSGQCN---- 282
Query: 126 LGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNFRLPNLAEFTSMLIGSRFIDL 185
L +G+G +++L++A + Y+ +++ + L M +
Sbjct: 283 LAFCYQKGIGTERNLEKAFEWYKRAAIQGLSRAKHNIGYCYQNGLGTSPCMRSAVNWYKE 342
Query: 186 SGLSANPIKFGKKFGILVKKSTQI-KDKTLLWEDIAEISSNITLLKQQMGEILYRIGIAY 244
S N G+ + + KD+ L +E ++ E + + + Y
Sbjct: 343 SAAEDNKYSI-HALGVCYQHGYGVPKDERLAVRYFSE------GVRAGFDEAIISLALCY 395
Query: 245 KEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 276
+ G+G R +++ ++++AE A L
Sbjct: 396 RSGIGVRISPEKSFALMKRAAEMNNSSAQNTL 427
>ref|NP_222869.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71968 hypothetical protein jhp0148 - Helicobacter pylori (strain J99)
gb|AAD05729.1| (AE001453) putative [Helicobacter pylori J99]
Length = 305
Score = 45.8 bits (107), Expect = 5e-04
Identities = 56/255 (21%), Positives = 94/255 (35%), Gaps = 33/255 (12%)
Query: 52 YFENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENA 111
YF+ +G Y +A ++ + +G+G L MY G GV + KA FY
Sbjct: 31 YFKMANQALKRGDYHRAVAFYKRSCNLRMGVGCTSLGSMYEYGDGVDQNISKAVFYYR-- 88
Query: 112 IKGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKS------------- 158
+G LG M +G G++KD +A+ YR + S
Sbjct: 89 -RGCNLRNHLACASLGSMYEDGDGVQKDFPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTG 147
Query: 159 --TNFANNFRLPNLAEFTSMLIGSRFIDLSGLSANPI-KFGKKFGILVKKSTQIKDKT-- 213
N+A A + I F+ SA + K KK K+ +KD
Sbjct: 148 VKQNYAKALSFSKYACSLNYGISCNFVGYMYKSAKGVEKDLKKALANFKRGCHLKDGASC 207
Query: 214 ----LLWEDIAEISSN----ITLLKQ----QMGEILYRIGIAYKEGLGTRKKKDRAKKFL 261
L+E ++ N + L K+ + G + + + Y G G K ++A +
Sbjct: 208 VSLGYLYEAGMDVKQNEEQALNLYKKGCSLKEGSGCHNVAVMYYTGKGAPKDLEKATSYY 267
Query: 262 QKSAEFGYEKAMEAL 276
+K G+ + + L
Sbjct: 268 KKGCALGFSGSCKVL 282
>gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [Helicobacter pylori]
Length = 122
Score = 45.4 bits (106), Expect = 7e-04
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 53 FENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAI 112
F+ G++++ Y +A K F A E G G L ++Y G+GV+ D+KKA E A
Sbjct: 34 FDLGVENYKAKDYIKAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKAC 93
Query: 113 KGYGSGLLGGALILGRMQAEGLGMKKDLKQA 143
S GG LG + G G++K+L +A
Sbjct: 94 DLNNS---GGCGTLGMLYEFGQGVEKNLTKA 121
>ref|NP_222941.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71958 hypothetical protein jhp0220 - Helicobacter pylori (strain J99)
gb|AAD05807.1| (AE001460) putative [Helicobacter pylori J99]
Length = 355
Score = 44.3 bits (103), Expect = 0.001
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 60 FNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGL 119
+ G Y +A F+ A + G L +Y G+G ++DYKKA Y + A +
Sbjct: 38 YKSGNYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDR-- 95
Query: 120 LGGALILGRMQAEGLGMKKDLKQALKTY 147
G LG + EGLG ++ ++A+ Y
Sbjct: 96 -EGCFGLGGLYDEGLGTAQNYQEAIDAY 122
>ref|NP_207033.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||C64549 conserved hypothetical secreted protein HP0235 - Helicobacter
pylori (strain 26695)
gb|AAD07303.1| (AE000543) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 355
Score = 44.3 bits (103), Expect = 0.001
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 60 FNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGL 119
+ G Y +A F+ A + G L +Y G+G ++DYKKA Y + A +
Sbjct: 38 YKSGNYSKATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDR-- 95
Query: 120 LGGALILGRMQAEGLGMKKDLKQALKTY 147
G LG + EGLG ++ ++A+ Y
Sbjct: 96 -EGCFGLGGLYDEGLGTTQNYQEAIDAY 122
>ref|NP_246550.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03695.1| (AE006198) unknown [Pasteurella multocida]
Length = 172
Score = 43.9 bits (102), Expect = 0.002
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 53 FENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENA 111
FE G++ + +G + AFK + E + +MY +G GV+ D ++A ++Y ++A
Sbjct: 30 FEQGVEAYKRGDHATAFKLWLSRAEQGEMSAQFNVGRMYDDGDGVEQDKQQALKWYQKSA 89
Query: 112 IKGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHV-----VRMFSNKSTNFAN 163
+ + LG M +EG G+ +D KQA K Y R N T +AN
Sbjct: 90 EQNHPD----AQYHLGLMYSEGDGIAQDFKQAYKWYSQSAVQGDARALYNLGTLYAN 142
Score = 41.6 bits (96), Expect = 0.010
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 66 QQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENAIKGYGSGLLGGAL 124
QQA K ++ + E + +L MY EG G+ D+K+A ++Y+++A++G L
Sbjct: 79 QQALKWYQKSAEQNHPDAQYHLGLMYSEGDGIAQDFKQAYKWYSQSAVQGDARALYN--- 135
Query: 125 ILGRMQAEGLGMKKDLKQALKTYRHVVR 152
LG + A G G+++D +A ++ +
Sbjct: 136 -LGTLYANGEGIERDWDRAKMYFKQACK 162
>ref|NP_661851.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72193.1| (AE012860) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 248
Score = 42.4 bits (98), Expect = 0.006
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 65 YQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENAIKGYGSGLLGGA 123
Y +A K +R++ + +Y G+GV+ DY +A ++Y +A KG G L
Sbjct: 139 YAEAMKWYRISAAKGNFAAEDNIGVLYEHGQGVEQDYAEAMRWYRISAAKGNGEAELN-- 196
Query: 124 LILGRMQAEGLGMKKDLKQALKTYR 148
+G GLG++ DL +A+K YR
Sbjct: 197 --IGNFYQHGLGVELDLNKAVKWYR 219
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.140 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,296,620
Number of Sequences: 1026957
Number of extensions: 6917322
Number of successful extensions: 16912
Number of sequences better than 1.0e-02: 29
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 16785
Number of HSP's gapped (non-prelim): 105
length of query: 276
length of database: 324,149,939
effective HSP length: 119
effective length of query: 157
effective length of database: 201,942,056
effective search space: 31704902792
effective search space used: 31704902792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 96 (41.6 bits)