BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644684|ref|NP_206854.1| hypothetical protein
[Helicobacter pylori 26695]
         (419 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206854.1|  (NC_000915) hypothetical protein [Helicoba...   855  0.0

>ref|NP_206854.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64526 hypothetical protein HP0053 - Helicobacter pylori (strain 26695)
 gb|AAD07128.1| (AE000527) H. pylori predicted coding region HP0053 [Helicobacter
           pylori 26695]
          Length = 419

 Score =  855 bits (2210), Expect = 0.0
 Identities = 419/419 (100%), Positives = 419/419 (100%)

Query: 1   MKEQSMIDFLKLRDYDIRKTQNARWIDQKCTPDVLSLVADCILEFTQCNIGKSFSIRDIW 60
           MKEQSMIDFLKLRDYDIRKTQNARWIDQKCTPDVLSLVADCILEFTQCNIGKSFSIRDIW
Sbjct: 1   MKEQSMIDFLKLRDYDIRKTQNARWIDQKCTPDVLSLVADCILEFTQCNIGKSFSIRDIW 60

Query: 61  DSPYTNENVKMIFSKPDLNSDFSMHEYDKFFSQPIKLLAYSGILFETKTGNRNIYTIQNI 120
           DSPYTNENVKMIFSKPDLNSDFSMHEYDKFFSQPIKLLAYSGILFETKTGNRNIYTIQNI
Sbjct: 61  DSPYTNENVKMIFSKPDLNSDFSMHEYDKFFSQPIKLLAYSGILFETKTGNRNIYTIQNI 120

Query: 121 ELLEYLMQRETNALKFLILYIQKVLMDSGIYPLFDNFLQKQDTESFKQLKDGFTHFTINN 180
           ELLEYLMQRETNALKFLILYIQKVLMDSGIYPLFDNFLQKQDTESFKQLKDGFTHFTINN
Sbjct: 121 ELLEYLMQRETNALKFLILYIQKVLMDSGIYPLFDNFLQKQDTESFKQLKDGFTHFTINN 180

Query: 181 TAINNATECFRIFTKIINPLAFYYGKKGTRKGYLSNTIITKDELNYNRINWRDIGKDKNT 240
           TAINNATECFRIFTKIINPLAFYYGKKGTRKGYLSNTIITKDELNYNRINWRDIGKDKNT
Sbjct: 181 TAINNATECFRIFTKIINPLAFYYGKKGTRKGYLSNTIITKDELNYNRINWRDIGKDKNT 240

Query: 241 TRQEYDLINSKRIANSNYLISKAKKVVKRYNDRFNNSLSEVKQEKEESQATQIHHIFPIQ 300
           TRQEYDLINSKRIANSNYLISKAKKVVKRYNDRFNNSLSEVKQEKEESQATQIHHIFPIQ
Sbjct: 241 TRQEYDLINSKRIANSNYLISKAKKVVKRYNDRFNNSLSEVKQEKEESQATQIHHIFPIQ 300

Query: 301 DFPIIANYIENLIALTPNQHFIYAHPNNQTRLIDKDFQYICLLAKTTTILNDTQGVYDWN 360
           DFPIIANYIENLIALTPNQHFIYAHPNNQTRLIDKDFQYICLLAKTTTILNDTQGVYDWN
Sbjct: 301 DFPIIANYIENLIALTPNQHFIYAHPNNQTRLIDKDFQYICLLAKTTTILNDTQGVYDWN 360

Query: 361 DYIVVLNMGLKTTIFSQVKNEWELLKVIDAFYFDFNKSKDPSWSYLLDKNDLRAFKLKF 419
           DYIVVLNMGLKTTIFSQVKNEWELLKVIDAFYFDFNKSKDPSWSYLLDKNDLRAFKLKF
Sbjct: 361 DYIVVLNMGLKTTIFSQVKNEWELLKVIDAFYFDFNKSKDPSWSYLLDKNDLRAFKLKF 419



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.321    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 263,215,237
Number of Sequences: 1026957
Number of extensions: 11139858
Number of successful extensions: 27592
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27591
Number of HSP's gapped (non-prelim): 1
length of query: 419
length of database: 324,149,939
effective HSP length: 124
effective length of query: 295
effective length of database: 196,807,271
effective search space: 58058144945
effective search space used: 58058144945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 99 (42.7 bits)