BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645179|ref|NP_207349.1| hypothetical protein
[Helicobacter pylori 26695]
(321 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207349.1| (NC_000915) hypothetical protein [Helicoba... 634 0.0
ref|NP_223219.1| (NC_000921) putative [Helicobacter pylori ... 548 e-155
ref|NP_281363.1| (NC_002163) putative membrane protein [Cam... 76 6e-13
>ref|NP_207349.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64589 hypothetical protein HP0554 - Helicobacter pylori (strain 26695)
gb|AAD07620.1| (AE000569) H. pylori predicted coding region HP0554 [Helicobacter
pylori 26695]
Length = 321
Score = 634 bits (1635), Expect = 0.0
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MEQNKKSLENLDLSDVQNISKDISGATLEELSLKNLDKNLQILKEVGVAEICKATKIASK 60
MEQNKKSLENLDLSDVQNISKDISGATLEELSLKNLDKNLQILKEVGVAEICKATKIASK
Sbjct: 1 MEQNKKSLENLDLSDVQNISKDISGATLEELSLKNLDKNLQILKEVGVAEICKATKIASK 60
Query: 61 NIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWMKEFDKACTFKEGVSEEQNQETDP 120
NIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWMKEFDKACTFKEGVSEEQNQETDP
Sbjct: 61 NIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWMKEFDKACTFKEGVSEEQNQETDP 120
Query: 121 EEKTKNPLKVEIDYSINQANIKLSKGLSKWKPFVLVLGVVVIVLAVVIIQNSSSLKEERG 180
EEKTKNPLKVEIDYSINQANIKLSKGLSKWKPFVLVLGVVVIVLAVVIIQNSSSLKEERG
Sbjct: 121 EEKTKNPLKVEIDYSINQANIKLSKGLSKWKPFVLVLGVVVIVLAVVIIQNSSSLKEERG 180
Query: 181 QESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKD 240
QESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKD
Sbjct: 181 QESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKD 240
Query: 241 IWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGHLSLKNNHQEQDYNDSKTRRF 300
IWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGHLSLKNNHQEQDYNDSKTRRF
Sbjct: 241 IWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGHLSLKNNHQEQDYNDSKTRRF 300
Query: 301 LYEPNKGLTLINEAQYKELQR 321
LYEPNKGLTLINEAQYKELQR
Sbjct: 301 LYEPNKGLTLINEAQYKELQR 321
>ref|NP_223219.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71924 hypothetical protein jhp0501 - Helicobacter pylori (strain J99)
gb|AAD06079.1| (AE001483) putative [Helicobacter pylori J99]
Length = 321
Score = 548 bits (1413), Expect = e-155
Identities = 278/321 (86%), Positives = 288/321 (89%)
Query: 1 MEQNKKSLENLDLSDVQNISKDISGATLEELSLKNLDKNLQILKEVGVAEICKATKIASK 60
MEQNKKSLENLDLSDVQNISKDISG LEELSLKNLDKNLQILKEVG AEICKATKIASK
Sbjct: 1 MEQNKKSLENLDLSDVQNISKDISGTALEELSLKNLDKNLQILKEVGAAEICKATKIASK 60
Query: 61 NIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWMKEFDKACTFKEGVSEEQNQETDP 120
NIHSILEKRYESLSRVHARGFIQILE EYKIDLSAW+KEFDK C FKEGV EEQ QET P
Sbjct: 61 NIHSILEKRYESLSRVHARGFIQILEHEYKIDLSAWVKEFDKVCVFKEGVGEEQKQETSP 120
Query: 121 EEKTKNPLKVEIDYSINQANIKLSKGLSKWKPFVLVLGVVVIVLAVVIIQNSSSLKEERG 180
EE K PLKVE+DYSINQAN LSK SKWKPFV+VLGVVVI+L VVIIQNSSSLKEER
Sbjct: 121 EETAKKPLKVELDYSINQANTSLSKKSSKWKPFVIVLGVVVIILVVVIIQNSSSLKEERE 180
Query: 181 QESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKD 240
QE AIK TK + FN+ NP EE K EPTPKLEEK KEQDKQ KEAIKE+PNTIYIIPK+D
Sbjct: 181 QERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDKQGKEAIKENPNTIYIIPKRD 240
Query: 241 IWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGHLSLKNNHQEQDYNDSKTRRF 300
IWVEVIDLDEKKNSFQKVFKK+Y LE KNHRLLLRFGHGHL LKNNHQEQDYNDSKTRRF
Sbjct: 241 IWVEVIDLDEKKNSFQKVFKKSYPLEAKNHRLLLRFGHGHLILKNNHQEQDYNDSKTRRF 300
Query: 301 LYEPNKGLTLINEAQYKELQR 321
LYEPNKGLTLINEAQYK LQ+
Sbjct: 301 LYEPNKGLTLINEAQYKALQQ 321
>ref|NP_281363.1| (NC_002163) putative membrane protein [Campylobacter jejuni]
pir||H81432 probable membrane protein Cj0152c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72636.1| (AL139074) putative membrane protein [Campylobacter jejuni]
Length = 312
Score = 75.9 bits (185), Expect = 6e-13
Identities = 78/331 (23%), Positives = 146/331 (43%), Gaps = 73/331 (22%)
Query: 39 NLQILKEVGVAEICKATKIASKNIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWMK 98
N + ++E+ + E+ T+I + +++EK + LSR + +GF++IL REY++D S + +
Sbjct: 3 NWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKGFVKILSREYELDFSDFNE 62
Query: 99 EFDKACTFKEGVSEEQNQETDPEEKTKNPLKVEIDYSINQANIKLSKGLSKWKPFVLVLG 158
E+ E E +P +TK+ + + + K + W PF++VL
Sbjct: 63 EY-----------EAYLNENNPTPQTKSKMITP------KLDAYSQKSFNTW-PFLIVLI 104
Query: 159 VVVIVLAVVIIQNS--SSLKEERGQESA--------IKSGTKKSFFNKANPIEENKPEPT 208
V+VI+ + + ++ + K+E+ SA + K N I+ NK + T
Sbjct: 105 VLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLGGNNVVVIDNNKAQET 164
Query: 209 PKLEEKPKEQ-------------------------DKQEKEAIKEDPNTIYIIPKKD--- 240
+ E Q D+++ I+ED NT PK D
Sbjct: 165 NRTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNT----PKTDSLK 220
Query: 241 ---------IWVEVIDLDE-KKNSFQKVFKKNYSLETKNHRLLLRFGHGHLSLKNNHQEQ 290
IW+ +IDL KK SF K +K++++ +L+L ++EQ
Sbjct: 221 EAHFKTSTKIWIGLIDLKSLKKTSFVK--EKDFNISLDKDQLILTGAAALTMFDQENKEQ 278
Query: 291 DYNDSKTRRFLYEPNKGLTLINEAQYKELQR 321
+ ++RFL + K +T I+ A++ +L +
Sbjct: 279 KFPAGISKRFLIKDGK-ITSISAAEFVKLNK 308
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.310 0.130 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,841,049
Number of Sequences: 1026957
Number of extensions: 8822636
Number of successful extensions: 44903
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44899
Number of HSP's gapped (non-prelim): 3
length of query: 321
length of database: 324,149,939
effective HSP length: 121
effective length of query: 200
effective length of database: 199,888,142
effective search space: 39977628400
effective search space used: 39977628400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 97 (42.0 bits)