BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645180|ref|NP_207350.1| hypothetical protein
[Helicobacter pylori 26695]
(273 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207350.1| (NC_000915) hypothetical protein [Helicoba... 537 e-152
ref|NP_223220.1| (NC_000921) putative [Helicobacter pylori ... 508 e-143
ref|NP_281362.1| (NC_002163) putative periplasmic protein [... 102 4e-21
>ref|NP_207350.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64589 hypothetical protein HP0555 - Helicobacter pylori (strain 26695)
gb|AAD07621.1| (AE000569) H. pylori predicted coding region HP0555 [Helicobacter
pylori 26695]
Length = 273
Score = 537 bits (1383), Expect = e-152
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MKNLFLAFIVGGMLLNXDALNDKVENLMGERAYHTNKLFLERLFKNRKAFYVMGRLDSLK 60
MKNLFLAFIVGGMLLN DALNDKVENLMGERAYHTNKLFLERLFKNRKAFYVMGRLDSLK
Sbjct: 1 MKNLFLAFIVGGMLLNXDALNDKVENLMGERAYHTNKLFLERLFKNRKAFYVMGRLDSLK 60
Query: 61 LLNTLKENGLLSFNFDKPSMLKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSSG 120
LLNTLKENGLLSFNFDKPSMLKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSSG
Sbjct: 61 LLNTLKENGLLSFNFDKPSMLKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSSG 120
Query: 121 ENVFSYDLKTEYVLDPNILIETMKRHGFDFVDIRRVSLKEWEYDFSLQEVKLPNARVLVL 180
ENVFSYDLKTEYVLDPNILIETMKRHGFDFVDIRRVSLKEWEYDFSLQEVKLPNARVLVL
Sbjct: 121 ENVFSYDLKTEYVLDPNILIETMKRHGFDFVDIRRVSLKEWEYDFSLQEVKLPNARVLVL 180
Query: 181 SSEPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFYDENLKIIQIIAKENRQQEIA 240
SSEPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFYDENLKIIQIIAKENRQQEIA
Sbjct: 181 SSEPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFYDENLKIIQIIAKENRQQEIA 240
Query: 241 LNLLNGVRFIHITDAKNPIVLKNGISVVFDAMP 273
LNLLNGVRFIHITDAKNPIVLKNGISVVFDAMP
Sbjct: 241 LNLLNGVRFIHITDAKNPIVLKNGISVVFDAMP 273
>ref|NP_223220.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71925 hypothetical protein jhp0502 - Helicobacter pylori (strain J99)
gb|AAD06080.1| (AE001483) putative [Helicobacter pylori J99]
Length = 273
Score = 508 bits (1308), Expect = e-143
Identities = 252/273 (92%), Positives = 266/273 (97%)
Query: 1 MKNLFLAFIVGGMLLNXDALNDKVENLMGERAYHTNKLFLERLFKNRKAFYVMGRLDSLK 60
M LFLAFIVGGMLL+ DALNDK+ENLMGER+YH NKLFLERLFKNRK FY MGRLDSLK
Sbjct: 1 MNKLFLAFIVGGMLLSADALNDKIENLMGERSYHMNKLFLERLFKNRKDFYEMGRLDSLK 60
Query: 61 LLNTLKENGLLSFNFDKPSMLKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSSG 120
LLNTLKENGLLSFNFDKPS+LKITFKASSNPLAFAKSINNSL+MMGYSYVLPI+MQSSSG
Sbjct: 61 LLNTLKENGLLSFNFDKPSVLKITFKASSNPLAFAKSINNSLNMMGYSYVLPIRMQSSSG 120
Query: 121 ENVFSYDLKTEYVLDPNILIETMKRHGFDFVDIRRVSLKEWEYDFSLQEVKLPNARVLVL 180
ENVFSY+LKTEYVLDPNILIETMKRHGFDF+DIRRVSLKEWEYDF+LQ++KLPNAR LVL
Sbjct: 121 ENVFSYELKTEYVLDPNILIETMKRHGFDFMDIRRVSLKEWEYDFALQKIKLPNARALVL 180
Query: 181 SSEPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFYDENLKIIQIIAKENRQQEIA 240
SS+PVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFYDENLKIIQIIAKENRQQEIA
Sbjct: 181 SSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFYDENLKIIQIIAKENRQQEIA 240
Query: 241 LNLLNGVRFIHITDAKNPIVLKNGISVVFDAMP 273
LNLL+GVRFIHITDAKNPI+LKNGISVVFDAMP
Sbjct: 241 LNLLDGVRFIHITDAKNPIILKNGISVVFDAMP 273
>ref|NP_281362.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||G81432 probable periplasmic protein Cj0151c [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB72635.1| (AL139074) putative periplasmic protein [Campylobacter jejuni]
Length = 268
Score = 102 bits (254), Expect = 4e-21
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 2/229 (0%)
Query: 40 LERLFKNRKAFYVMGRLDSLKLLNTLKENGLLSFNFDKPSMLKITFKASSNPLAFAKSIN 99
LE LF N G D K+ LK N L++ P L++ FKA ++ + F K ++
Sbjct: 37 LELLFSNNSYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLRLNFKAKADEVMFFKILS 96
Query: 100 NSLSMMGYSYVLPIKMQSSSGENVFSYDLKTEYVLDPNILIETMKRHGFDFVDIRRVSLK 159
+ L+ GY Y +P + G ++ ++++YVLDP L +K + +I+R+ +
Sbjct: 97 DVLTDAGYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYINNIKRIGVY 156
Query: 160 EWEYDFSLQEVKLPNARVLVLSSEPVEFKEASGKYWLSVNQNAYLKISSNN-PLWQPKII 218
++EYD + L + L++ P ++ Y L + L I +N+ W PKI
Sbjct: 157 DYEYDLNFSNAVLKTNTNVNLNT-PKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIF 215
Query: 219 FYDENLKIIQIIAKENRQQEIALNLLNGVRFIHITDAKNPIVLKNGISV 267
F D+NL +I+ + EN+ + + NG + ++D + ++ G+ +
Sbjct: 216 FLDKNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKI 264
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.137 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,547,726
Number of Sequences: 1026957
Number of extensions: 6274783
Number of successful extensions: 15893
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15889
Number of HSP's gapped (non-prelim): 3
length of query: 273
length of database: 324,149,939
effective HSP length: 119
effective length of query: 154
effective length of database: 201,942,056
effective search space: 31099076624
effective search space used: 31099076624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)