BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645181|ref|NP_207351.1| hypothetical protein
[Helicobacter pylori 26695]
         (145 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207351.1|  (NC_000915) hypothetical protein [Helicoba...   299  4e-81
ref|NP_223221.1|  (NC_000921) putative [Helicobacter pylori ...   291  8e-79

>ref|NP_207351.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64589 hypothetical protein HP0556 - Helicobacter pylori (strain 26695)
 gb|AAD07631.1| (AE000570) H. pylori predicted coding region HP0556 [Helicobacter
           pylori 26695]
          Length = 145

 Score =  299 bits (765), Expect = 4e-81
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MVTHEKIKSRFSRNWSLRNRGRHFASASVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFL 60
           MVTHEKIKSRFSRNWSLRNRGRHFASASVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFL
Sbjct: 1   MVTHEKIKSRFSRNWSLRNRGRHFASASVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFL 60

Query: 61  ISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVLFIE 120
           ISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVLFIE
Sbjct: 61  ISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVLFIE 120

Query: 121 AGAGLLVGCVIQKIFFGKYWVDRYY 145
           AGAGLLVGCVIQKIFFGKYWVDRYY
Sbjct: 121 AGAGLLVGCVIQKIFFGKYWVDRYY 145



>ref|NP_223221.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71922 hypothetical protein jhp0503 - Helicobacter pylori (strain J99)
 gb|AAD06092.1| (AE001484) putative [Helicobacter pylori J99]
          Length = 145

 Score =  291 bits (745), Expect = 8e-79
 Identities = 141/145 (97%), Positives = 142/145 (97%)

Query: 1   MVTHEKIKSRFSRNWSLRNRGRHFASASVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFL 60
           MV HEKIKSRFSRNWSLRNRGRHFAS+SVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFL
Sbjct: 1   MVIHEKIKSRFSRNWSLRNRGRHFASSSVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFL 60

Query: 61  ISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVLFIE 120
           ISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAV FIE
Sbjct: 61  ISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVFFIE 120

Query: 121 AGAGLLVGCVIQKIFFGKYWVDRYY 145
           AGA LLVGCVIQKIFFGKYWVDRYY
Sbjct: 121 AGADLLVGCVIQKIFFGKYWVDRYY 145



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.332    0.144    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,372,215
Number of Sequences: 1026957
Number of extensions: 3430812
Number of successful extensions: 9371
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9369
Number of HSP's gapped (non-prelim): 2
length of query: 145
length of database: 324,149,939
effective HSP length: 121
effective length of query: 24
effective length of database: 199,888,142
effective search space: 4797315408
effective search space used: 4797315408
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 89 (38.9 bits)