BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645188|ref|NP_207358.1| hypothetical protein
[Helicobacter pylori 26695]
(416 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207358.1| (NC_000915) hypothetical protein [Helicoba... 890 0.0
ref|NP_223228.1| (NC_000921) putative [Helicobacter pylori ... 853 0.0
ref|NP_207897.1| (NC_000915) hypothetical protein [Helicoba... 224 1e-57
ref|NP_223750.1| (NC_000921) putative [Helicobacter pylori ... 221 9e-57
>ref|NP_207358.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64590 hypothetical protein HP0563 - Helicobacter pylori (strain 26695)
gb|AAD07632.1| (AE000570) H. pylori predicted coding region HP0563 [Helicobacter
pylori 26695]
Length = 416
Score = 890 bits (2301), Expect = 0.0
Identities = 416/416 (100%), Positives = 416/416 (100%)
Query: 1 MAINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLT 60
MAINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLT
Sbjct: 1 MAINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLT 60
Query: 61 PNFGIQFYTRGVEQSLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRK 120
PNFGIQFYTRGVEQSLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRK
Sbjct: 61 PNFGIQFYTRGVEQSLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRK 120
Query: 121 NLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKF 180
NLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKF
Sbjct: 121 NLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKF 180
Query: 181 GRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN 240
GRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN
Sbjct: 181 GRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN 240
Query: 241 SAIYLLDRLYYNAYISTSLLDIAPFMEKLSAKFGMVSEASRLRNREKEVPFINSVGGQFD 300
SAIYLLDRLYYNAYISTSLLDIAPFMEKLSAKFGMVSEASRLRNREKEVPFINSVGGQFD
Sbjct: 241 SAIYLLDRLYYNAYISTSLLDIAPFMEKLSAKFGMVSEASRLRNREKEVPFINSVGGQFD 300
Query: 301 VEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFD 360
VEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFD
Sbjct: 301 VEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFD 360
Query: 361 FYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMTVAFDPYNLINKIARKK 416
FYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMTVAFDPYNLINKIARKK
Sbjct: 361 FYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMTVAFDPYNLINKIARKK 416
>ref|NP_223228.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71923 hypothetical protein jhp0510 - Helicobacter pylori (strain J99)
gb|AAD06086.1| (AE001484) putative [Helicobacter pylori J99]
Length = 416
Score = 853 bits (2205), Expect = 0.0
Identities = 398/416 (95%), Positives = 405/416 (96%)
Query: 1 MAINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLT 60
MAINTFLKHSFLV LLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLT
Sbjct: 1 MAINTFLKHSFLVRLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLT 60
Query: 61 PNFGIQFYTRGVEQSLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRK 120
PNFGIQFYTRGVEQSLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRK
Sbjct: 61 PNFGIQFYTRGVEQSLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRK 120
Query: 121 NLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKF 180
NLLGRYGLNIFAPYYWFIDPNAR LLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKF
Sbjct: 121 NLLGRYGLNIFAPYYWFIDPNARWVLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKF 180
Query: 181 GRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN 240
GRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAID+
Sbjct: 181 GRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDS 240
Query: 241 SAIYLLDRLYYNAYISTSLLDIAPFMEKLSAKFGMVSEASRLRNREKEVPFINSVGGQFD 300
+ IYLLDRLY+NAYI TSLLDIAPFMEKL+A FGMVSE+SRLR K VPF+NSVGGQ D
Sbjct: 241 NNIYLLDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESSRLRQIHKNVPFMNSVGGQLD 300
Query: 301 VEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFD 360
VEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFD
Sbjct: 301 VEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFD 360
Query: 361 FYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMTVAFDPYNLINKIARKK 416
FYYNWKNDFASVRINF+LNAMRGGFDRSLPWSESYQVYMTVAFDPYNLINKIARKK
Sbjct: 361 FYYNWKNDFASVRINFLLNAMRGGFDRSLPWSESYQVYMTVAFDPYNLINKIARKK 416
>ref|NP_207897.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64658 hypothetical protein HP1106 - Helicobacter pylori (strain 26695)
gb|AAD08159.1| (AE000617) H. pylori predicted coding region HP1106 [Helicobacter
pylori 26695]
Length = 435
Score = 224 bits (572), Expect = 1e-57
Identities = 139/436 (31%), Positives = 211/436 (47%), Gaps = 59/436 (13%)
Query: 15 LLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLTPNFGIQFYTRGVEQ 74
L+ S+ +D +N FN+ + PYW N+ T ++ RL P G+Q R Q
Sbjct: 21 LMKAASFVYDLKFMSFN--FNLVA---PANNPYW-NSLTKMQGRLMPQIGVQLDKR---Q 71
Query: 75 SLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRKNLLGRYGLNIFAPY 134
+L GA+F QN H + + FPY WG TMYY+ GK F+ GI PR +G Y L+ F
Sbjct: 72 ALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKL 131
Query: 135 YWFIDPNARGFLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKFGRNPYGNAMDRFQM 194
+WFIDP RG QF+ Y P++ + G E ++DW+GG +N +N D+F
Sbjct: 132 FWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKN---YDFDQFLY 188
Query: 195 NGSVAYNFFKDLLGIGGYFVLFHNE------DKYLLNGADGMQ--------------FNE 234
S + F K LG+GG V+FHN D Y G ++ F++
Sbjct: 189 FVSSEFQFLKGYLGLGGQLVVFHNASHHSMGDNYPYGGNSYLKPGDVTPQWPNGYPYFSQ 248
Query: 235 KKAIDNSAI------YLLDRLYYNAYISTSLLDIAPFMEKLSAKFGMVSEAS----RLRN 284
K I +LDR+YY+AY+ ++ P+M+ + FG S + R +
Sbjct: 249 KNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYAS 308
Query: 285 REKEVPFINSVGGQFDVEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPI 344
K F NS GG+F + QYKGFGI N ++F+ P+M FY Y +
Sbjct: 309 ECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATY------------GQSL 356
Query: 345 YRGVPFFQANMYNRFDFYYNWKNDFASVRINFVLNAMRGG-----FDRSLPWSESYQVYM 399
Y G+P+++A ++ YY +KN + SVR + N + GG + + W +YQ ++
Sbjct: 357 YTGLPWYRAPNFDMIGLYYVYKNKWVSVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFL 416
Query: 400 TVAFDPYNLINKIARK 415
T+ D LI+ + K
Sbjct: 417 TLTIDTRELIDFVKSK 432
>ref|NP_223750.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71857 hypothetical protein jhp1033 - Helicobacter pylori (strain J99)
gb|AAD06612.1| (AE001531) putative [Helicobacter pylori J99]
Length = 435
Score = 221 bits (564), Expect = 9e-57
Identities = 138/440 (31%), Positives = 211/440 (47%), Gaps = 59/440 (13%)
Query: 11 FLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLTPNFGIQFYTR 70
F+ L+ S+ +D +N F + + PYW N+ T ++ RL P G+Q R
Sbjct: 17 FIPPLMKAASFVYDLKFMSFN-----FNLASPPNNPYW-NSLTKMQGRLMPQIGVQLDKR 70
Query: 71 GVEQSLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRKNLLGRYGLNI 130
Q+L GA+F QN H + + FPY WG TMYY+ GK F+ GI PR +G Y L+
Sbjct: 71 ---QALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSA 127
Query: 131 FAPYYWFIDPNARGFLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKFGRNPYGNAMD 190
F +WFIDP RG QF+ Y P++ + G E ++DW+GG +N +N D
Sbjct: 128 FKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKN---YDFD 184
Query: 191 RFQMNGSVAYNFFKDLLGIGGYFVLFHNE------DKYLLNGADGMQ------------- 231
+F S + F K LG+GG V+FHN D Y G ++
Sbjct: 185 QFLYFVSSEFQFLKGYLGLGGQLVIFHNANSHSMGDNYPYGGNSYLKPGDATPQWPNGYP 244
Query: 232 -FNEKKAIDNSAI------YLLDRLYYNAYISTSLLDIAPFMEKLSAKFGMVSEAS---- 280
F++K I +LDR+YY+AY+ ++ P+M+ + FG S +
Sbjct: 245 YFSQKDNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCV 304
Query: 281 RLRNREKEVPFINSVGGQFDVEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYC 340
R + K F NS GG+F + QYKGFGI N ++F+ P+M FY Y
Sbjct: 305 RYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATY------------ 352
Query: 341 PTPIYRGVPFFQANMYNRFDFYYNWKNDFASVRINFVLNAMRGG-----FDRSLPWSESY 395
+Y G+P+++A ++ YY +KN + SVR + + + GG + + W Y
Sbjct: 353 GQSLYTGLPWYRAPNFDMIGLYYLYKNKWLSVRADAFFSFVGGGDGYHLYGKGGKWFVMY 412
Query: 396 QVYMTVAFDPYNLINKIARK 415
Q ++T+ D LI+ + K
Sbjct: 413 QQFLTLTIDTRELIDFVKSK 432
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.327 0.143 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,121,995
Number of Sequences: 1026957
Number of extensions: 13938950
Number of successful extensions: 29835
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29821
Number of HSP's gapped (non-prelim): 5
length of query: 416
length of database: 324,149,939
effective HSP length: 124
effective length of query: 292
effective length of database: 196,807,271
effective search space: 57467723132
effective search space used: 57467723132
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 99 (42.7 bits)